Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Forward (+)

12850183 .. 12851253

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20681.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACAGCCGCACTGGTGTGCTGGTTGAGCCGTGCGAGCACGGAAGAGGACATGGTGGAGCAGGCCATGCTGATGAGGACAGAGGACAGATCGGAGGGGATGAGCTCTTCGTTTTCGTCGGCGGAGAGCTCCGCCGCCGTTGCCGAAGTCAAGGAGTCGTCGGCGATGCAGAAGAAGCTCTATGCTCAAGCCGGGTTTGAGATGAAAGAAGTGTTTCTTCATATAAAATTGATAGAGCAGGCGGCAGTGGATGACTACCCTGCAATGTTGATTCAAGAGGTTTCGGAGCATGAAGCTCAGGGGTCTGTATACAAGCTCACATTTGCTTGTAACTCTACGGTTTCACGGCCGGTGATGTCTAATGCGCTTGAAACGGCATCCATTTGCTGTAAGAAAGTACAGATCTTTGAGAAGAAGGGATGTACTCTCGGCATTGTTCTACTTCTAGTTCAAGGCGGGCAGGAGAAGTCGTTCAGAAGTAGTTTTATTGGGGTAACTGGTTACTGGGGAAATTCCGGTGACCGGAGTCCGGCTGTCGGGGAAATTCCGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.16

Weight (kDa)

5.17

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7377	PF24093	62 - 160	2.4e-49	Domain of unknown function (DUF7377)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	6 cut(s)	9, 122, 132, 135, 242, 456
AcoI	YGGCCR	2 cut(s)	347, 571
AcsI	RAATTY	2 cut(s)	511, 543
AfaI	GTAC	2 cut(s)	399, 424
AfiI	CCNNNNNNNGG	4 cut(s)	522, 529, 536, 554
AgsI	TTSAA	3 cut(s)	275, 371, 452
AleI	CACNNNNGTG	1 cut(s)	16
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	5 cut(s)	105, 129, 178, 296, 316
AluI	AGCT	5 cut(s)	105, 129, 178, 296, 316
Alw21I	GWGCWC	3 cut(s)	41, 107, 131
AoxI	GGCC	3 cut(s)	63, 347, 571
ApoI	RAATTY	2 cut(s)	511, 543
Asp700I	GAANNNNTTC	2 cut(s)	213, 470
AspLEI	GCGC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	364, 530, 562
BanII	GRGCYC	2 cut(s)	107, 131
Bbv12I	GWGCWC	3 cut(s)	41, 107, 131
BceAI	ACGGC	4 cut(s)	15, 122, 362, 390
BcnI	CCSGG	1 cut(s)	193
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	3 cut(s)	9, 135, 243
BlsI	GCNGC	3 cut(s)	10, 136, 244
Bme1390I	CCNGG	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	156, 386
BmuI	ACTGGG	1 cut(s)	514
BoxI	GACNNNNGTC	2 cut(s)	525, 557
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	4 cut(s)	515, 522, 547, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	522, 529, 536, 554
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	3 cut(s)	18, 502, 509
Bse3DI	GCAATG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	4 cut(s)	105, 256, 377, 425
BseLI	CCNNNNNNNGG	4 cut(s)	522, 529, 536, 554
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	18, 502, 509
BseX3I	CGGCCG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	65, 349, 573
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	3 cut(s)	41, 107, 131
BsiSI	CCGG	8 cut(s)	192, 350, 516, 523, 530, 548, 555, 570
BslI	CCNNNNNNNGG	4 cut(s)	522, 529, 536, 554
BsnI	GGCC	3 cut(s)	65, 349, 573
Bsp1286I	GDGCHC	3 cut(s)	41, 107, 131
Bsp143I	GATC	2 cut(s)	89, 402
BspACI	CCGC	6 cut(s)	9, 122, 132, 135, 242, 456
BspANI	GGCC	3 cut(s)	65, 349, 573
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	18, 502, 509
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	2 cut(s)	89, 402
BssNAI	GTATAC	1 cut(s)	310
Bst1107I	GTATAC	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	39, 112
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstC8I	GCNNGC	4 cut(s)	37, 63, 240, 458
BstDEI	CTNAG	1 cut(s)	297
BstEII	GGTNACC	2 cut(s)	518, 550
BstF5I	GGATG	4 cut(s)	105, 256, 377, 425
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	2 cut(s)	92, 405
BstMBI	GATC	2 cut(s)	89, 402
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 36, 67, 140, 175
BstPAI	GACNNNNGTC	2 cut(s)	525, 557
BstPI	GGTNACC	2 cut(s)	518, 550
BstSCI	CCNGG	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BstZ17I	GTATAC	1 cut(s)	310
BstZI	CGGCCG	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	65, 349, 573
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	4 cut(s)	105, 256, 377, 425
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	11, 252
Cac8I	GCNNGC	4 cut(s)	37, 63, 240, 458
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	398, 423
CviAII	CATG	4 cut(s)	52, 67, 290, 585
CviQI	GTAC	2 cut(s)	398, 423
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	2 cut(s)	91, 404
DpnII	GATC	2 cut(s)	89, 402
EaeI	YGGCCR	2 cut(s)	347, 571
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	39, 112
EarI	CTCTTC	2 cut(s)	39, 112
EciI	GGCGGA	2 cut(s)	121, 137
Ecl136II	GAGCTC	2 cut(s)	105, 129
EclXI	CGGCCG	1 cut(s)	347
Eco24I	GRGCYC	2 cut(s)	107, 131
Eco52I	CGGCCG	1 cut(s)	347
Eco53kI	GAGCTC	2 cut(s)	105, 129
Eco91I	GGTNACC	2 cut(s)	518, 550
EcoICRI	GAGCTC	2 cut(s)	105, 129
EcoO65I	GGTNACC	2 cut(s)	518, 550
EcoT38I	GRGCYC	2 cut(s)	107, 131
FaeI	CATG	4 cut(s)	55, 70, 293, 588
FaiI	YATR	8 cut(s)	53, 68, 183, 222, 224, 291, 310, 586
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	4 cut(s)	51, 66, 289, 584
FauI	CCCGC	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	9, 135, 243
FokI	GGATG	4 cut(s)	112, 263, 364, 432
FriOI	GRGCYC	2 cut(s)	107, 131
Fsp4HI	GCNGC	3 cut(s)	9, 135, 243
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	9, 135, 243
HaeIII	GGCC	3 cut(s)	65, 349, 573
HapII	CCGG	8 cut(s)	192, 350, 516, 523, 530, 548, 555, 570
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	55, 70, 293, 588
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	4 cut(s)	155, 271, 526, 558
HpaII	CCGG	8 cut(s)	192, 350, 516, 523, 530, 548, 555, 570
HphI	GGTGA	3 cut(s)	364, 530, 562
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	94, 286, 476, 563
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	2 cut(s)	121, 163
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	2 cut(s)	169, 263
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 36, 67, 140, 175
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	55, 70, 293, 588
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	2 cut(s)	89, 402
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	58, 134, 286
LweI	GCATC	2 cut(s)	156, 386
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	5 cut(s)	329, 493, 500, 518, 550
MalI	GATC	2 cut(s)	91, 404
MboI	GATC	2 cut(s)	89, 402
MboII	GAAGA	5 cut(s)	56, 99, 184, 209, 424
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	3 cut(s)	41, 107, 131
MluCI	AATT	3 cut(s)	227, 511, 543
MlyI	GAGTC	3 cut(s)	164, 535, 567
MnlI	CCTC	6 cut(s)	40, 69, 76, 88, 271, 557
MroXI	GAANNNNTTC	2 cut(s)	213, 470
MslI	CAYNNNNRTG	2 cut(s)	16, 71
MspI	CCGG	8 cut(s)	192, 350, 516, 523, 530, 548, 555, 570
MspR9I	CCNGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	5 cut(s)	27, 36, 67, 140, 175
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	89, 402
NlaIII	CATG	4 cut(s)	55, 70, 293, 588
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	518, 550
OliI	CACNNNNGTG	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	213, 470
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	10, 136, 244
PleI	GAGTC	3 cut(s)	163, 534, 566
PpsI	GAGTC	3 cut(s)	163, 534, 566
PshAI	GACNNNNGTC	2 cut(s)	525, 557
Psp124BI	GAGCTC	2 cut(s)	107, 131
PspEI	GGTNACC	2 cut(s)	518, 550
PspN4I	GGNNCC	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	2 cut(s)	399, 424
RsaNI	GTAC	2 cut(s)	398, 423
RseI	CAYNNNNRTG	2 cut(s)	16, 71
SacI	GAGCTC	2 cut(s)	107, 131
SapI	GCTCTTC	1 cut(s)	112
SatI	GCNGC	3 cut(s)	9, 135, 243
Sau3AI	GATC	2 cut(s)	89, 402
SchI	GAGTC	3 cut(s)	164, 535, 567
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	41, 107, 131
SetI	ASST	7 cut(s)	107, 131, 180, 282, 298, 318, 568
SfaNI	GCATC	2 cut(s)	156, 386
SmiMI	CAYNNNNRTG	2 cut(s)	16, 71
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	227, 511, 543
SsiI	CCGC	6 cut(s)	9, 122, 132, 135, 242, 456
SspMI	CTAG	1 cut(s)	446
SstI	GAGCTC	2 cut(s)	107, 131
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	3 cut(s)	227, 511, 543
TatI	WGTACW	2 cut(s)	397, 422
TauI	GCSGC	3 cut(s)	11, 137, 245
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	2 cut(s)	18, 252
TseFI	GTSAC	2 cut(s)	518, 550
Tsp45I	GTSAC	2 cut(s)	518, 550
TspDTI	ATGAA	4 cut(s)	209, 218, 306, 573
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	18, 252
XapI	RAATTY	2 cut(s)	511, 543
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	2 cut(s)	213, 470
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.