Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Reverse (-)

11081264 .. 11082186

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAAGAAGAAGAGGCTCAAGAGGTTAAAGCCAAAGAGCCTACTGCTGCTATTCCTGAGGAGACCACTGAGGCTGCTGAGGAGCCAATGGTGGCTCCCGTAGTCGAGGAGGAAGTAGAGAAACTAGTTGAAGCAGCAAAGGAGGCACCTGAGGTTGTTGCCACAGAAGAAGCTCCGGTTGAGAAGGGGTCAGTAACTGGTTACAGAGGAAAATCCGGTGACCGGAATCTAGCGGTCGGGGAAATTCCAGTGACCGGAATCTGGCGGTCGGTGACCGGTGTCCGGCGGCCGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.68

Weight (kDa)

4.48

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	3 cut(s)	233, 265, 286
AcoI	YGGCCR	2 cut(s)	287, 313
AcsI	RAATTY	1 cut(s)	243
AfiI	CCNNNNNNNGG	6 cut(s)	222, 254, 261, 282, 289, 296
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	131
AhlI	ACTAGT	1 cut(s)	124
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	287, 313
ApeKI	GCWGC	3 cut(s)	47, 74, 134
ApoI	RAATTY	1 cut(s)	243
AsiGI	ACCGGT	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	230, 283, 304
AxyI	CCTNAGG	2 cut(s)	57, 150
BanI	GGYRCC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	34, 61, 146
BcoDI	GTCTC	1 cut(s)	56
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	2 cut(s)	125, 230
BisI	GCNGC	4 cut(s)	48, 75, 135, 287
BlsI	GCNGC	4 cut(s)	49, 76, 136, 288
BmiI	GGNNCC	4 cut(s)	84, 96, 147, 310
BoxI	GACNNNNGTC	2 cut(s)	278, 299
Bpu10I	CCTNAGC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	6 cut(s)	175, 215, 222, 254, 275, 296
Bsc4I	CCNNNNNNNGG	6 cut(s)	222, 254, 261, 282, 289, 296
Bse118I	RCCGGY	2 cut(s)	275, 289
Bse1I	ACTGG	2 cut(s)	202, 248
Bse21I	CCTNAGG	2 cut(s)	57, 150
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	6 cut(s)	222, 254, 261, 282, 289, 296
BseMII	CTCAG	4 cut(s)	48, 60, 69, 141
BseNI	ACTGG	2 cut(s)	202, 248
BseRI	GAGGAG	3 cut(s)	74, 95, 122
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	34, 61, 146
Bsh1285I	CGRYCG	3 cut(s)	237, 269, 290
BshFI	GGCC	2 cut(s)	289, 315
BshNI	GGYRCC	1 cut(s)	145
BshTI	ACCGGT	1 cut(s)	275
BsiEI	CGRYCG	3 cut(s)	237, 269, 290
BsiSI	CCGG	9 cut(s)	176, 216, 223, 255, 276, 283, 290, 297, 312
BslI	CCNNNNNNNGG	6 cut(s)	222, 254, 261, 282, 289, 296
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	289, 315
Bso31I	GGTCTC	1 cut(s)	56
BspACI	CCGC	3 cut(s)	233, 265, 286
BspANI	GGCC	2 cut(s)	289, 315
BspCNI	CTCAG	4 cut(s)	49, 61, 70, 142
BspLI	GGNNCC	4 cut(s)	84, 96, 147, 310
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	2 cut(s)	275, 289
BsrI	ACTGG	2 cut(s)	202, 248
BssAI	RCCGGY	2 cut(s)	275, 289
BssECI	CCNNGG	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	57, 69, 78, 150
BstEII	GGTNACC	3 cut(s)	218, 271, 292
BstMAI	GTCTC	1 cut(s)	56
BstMCI	CGRYCG	3 cut(s)	237, 269, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstPAI	GACNNNNGTC	2 cut(s)	278, 299
BstPI	GGTNACC	3 cut(s)	218, 271, 292
BstV1I	GCAGC	3 cut(s)	34, 61, 146
BstZI	CGGCCG	1 cut(s)	287
Bsu36I	CCTNAGG	2 cut(s)	57, 150
BsuRI	GGCC	2 cut(s)	289, 315
BtsIMutI	CAGTG	2 cut(s)	66, 255
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr10I	RCCGGY	2 cut(s)	275, 289
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	9 cut(s)	17, 32, 40, 74, 85, 95, 173, 289, 315
CviKI_1	RGCY	9 cut(s)	17, 32, 40, 74, 85, 95, 173, 289, 315
DdeI	CTNAG	4 cut(s)	57, 69, 78, 150
EaeI	YGGCCR	2 cut(s)	287, 313
EagI	CGGCCG	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	287
Eco81I	CCTNAGG	2 cut(s)	57, 150
Eco91I	GGTNACC	3 cut(s)	218, 271, 292
EcoO65I	GGTNACC	3 cut(s)	218, 271, 292
FaeI	CATG	1 cut(s)	330
FaiI	YATR	1 cut(s)	328
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	4 cut(s)	48, 75, 135, 287
Fsp4HI	GCNGC	4 cut(s)	48, 75, 135, 287
FspBI	CTAG	2 cut(s)	125, 230
GluI	GCNGC	4 cut(s)	48, 75, 135, 287
HaeIII	GGCC	2 cut(s)	289, 315
HapII	CCGG	9 cut(s)	176, 216, 223, 255, 276, 283, 290, 297, 312
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	3 cut(s)	226, 258, 300
HpaII	CCGG	9 cut(s)	176, 216, 223, 255, 276, 283, 290, 297, 312
HphI	GGTGA	3 cut(s)	230, 283, 304
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	2 cut(s)	20, 56
HpyAV	CCTTC	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	4 cut(s)	57, 69, 78, 150
Hsp92II	CATG	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	82, 100, 178
Lsp1109I	GCAGC	3 cut(s)	34, 61, 146
MaeI	CTAG	2 cut(s)	125, 230
MaeIII	GTNAC	6 cut(s)	193, 200, 218, 250, 271, 292
MboII	GAAGA	4 cut(s)	17, 20, 23, 179
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	309
MseI	TTAA	1 cut(s)	27
MspI	CCGG	9 cut(s)	176, 216, 223, 255, 276, 283, 290, 297, 312
MwoI	GCNNNNNNNGC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	4 cut(s)	84, 96, 147, 310
NmuCI	GTSAC	4 cut(s)	218, 250, 271, 292
PfeI	GAWTC	2 cut(s)	226, 258
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	49, 76, 136, 288
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PshAI	GACNNNNGTC	2 cut(s)	278, 299
PspEI	GGTNACC	3 cut(s)	218, 271, 292
PspN4I	GGNNCC	4 cut(s)	84, 96, 147, 310
PstNI	CAGNNNCTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	48, 75, 135, 287
SchI	GAGTC	1 cut(s)	309
SetI	ASST	5 cut(s)	27, 151, 156, 175, 310
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	3 cut(s)	233, 265, 286
SspMI	CTAG	2 cut(s)	125, 230
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	243
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	226, 258
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	73, 255
TseFI	GTSAC	4 cut(s)	218, 250, 271, 292
TseI	GCWGC	3 cut(s)	47, 74, 134
Tsp45I	GTSAC	4 cut(s)	218, 250, 271, 292
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	73, 255
XapI	RAATTY	1 cut(s)	243
XspI	CTAG	2 cut(s)	125, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.