Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Forward (+)

7450596 .. 7451653

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAAACAGGATTGCCAAGGCGAGAAAATCCTTCGTCGGCGACCTCATCCTCGCCTCCACCATCTCCGGCGACCTCTTCCGTGGAGGGACGTCTGTCCTCCGCATCCTAATGAGTGCGCCGCTCTCCTCCGACCTCCGCACCAAGTACAGCGTCCAGTTCATGTCGGTGCGCAAGGACGACGAGGTCCAGGTGGTTCGTGGGACCTACAAGGGCCACGAAGGCAAGGTCGTCCAGGTGTACCACCGCAACAGAGGAATCCGGCAGCGCCGTTTGTCTCTGTTACCTAGCTCATCTTCCAGCTCGGCTGGAGTTCGATCCGGTCTGGATAGTGGCTGGGGAAGGGCGCTGCTTGCTGCCGTGCGCCGGGGTCGATGGAGGAGGCCGGTGGAGGAGGTCGGGGAAGGTGGGTGCCCAGTTCAAGTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

144

Amino Acids

15.66

Weight (kDa)

11.34

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	31 - 75	6.2e-06	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	59 - 83	4.6e-06	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AatII	GACGTC	1 cut(s)	95
Acc16I	TGCGCA	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	4 cut(s)	103, 122, 139, 247
AclWI	GGATC	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	149, 242
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	189, 234
AluBI	AGCT	2 cut(s)	291, 303
AluI	AGCT	2 cut(s)	291, 303
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	2 cut(s)	214, 383
ApeKI	GCWGC	3 cut(s)	265, 349, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AspLEI	GCGC	5 cut(s)	121, 174, 270, 349, 366
AspS9I	GGNCC	3 cut(s)	187, 204, 214
AsuC2I	CCSGG	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	187, 204
BaeGI	GKGCMC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	277, 336, 343
BccI	CCATC	2 cut(s)	71, 369
BceAI	ACGGC	2 cut(s)	255, 344
BciT130I	CCWGG	2 cut(s)	191, 236
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	2 cut(s)	271, 350
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	4 cut(s)	122, 266, 350, 357
BlsI	GCNGC	4 cut(s)	123, 267, 351, 358
Bme1390I	CCNGG	3 cut(s)	191, 236, 368
Bme18I	GGWCC	2 cut(s)	187, 204
BmgT120I	GGNCC	3 cut(s)	187, 204, 214
BmiI	GGNNCC	2 cut(s)	205, 413
BmrFI	CCNGG	3 cut(s)	191, 236, 368
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	18, 82, 367
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	157, 416
BseBI	CCWGG	2 cut(s)	191, 236
BseDI	CCNNGG	3 cut(s)	18, 82, 367
BseGI	GGATG	2 cut(s)	48, 105
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	157, 416
BseRI	GAGGAG	3 cut(s)	118, 394, 407
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	277, 336, 343
BseYI	CCCAGC	1 cut(s)	336
BshFI	GGCC	2 cut(s)	216, 385
BshNI	GGYRCC	1 cut(s)	411
BsiSI	CCGG	5 cut(s)	69, 262, 321, 367, 386
BslFI	GGGAC	2 cut(s)	103, 217
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	103, 217
BsnI	GGCC	2 cut(s)	216, 385
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	317
BspACI	CCGC	4 cut(s)	103, 122, 139, 247
BspANI	GGCC	2 cut(s)	216, 385
BspLI	GGNNCC	2 cut(s)	205, 413
BspPI	GGATC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	157, 416
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	18, 82, 367
BssMI	GATC	1 cut(s)	317
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	191, 236
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	354
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	48, 105
BstH2I	RGCGCY	2 cut(s)	271, 350
BstHHI	GCGC	5 cut(s)	121, 174, 270, 349, 366
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 353
BstNI	CCWGG	2 cut(s)	191, 236
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	189, 234, 366
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	277, 336, 343
BsuRI	GGCC	2 cut(s)	216, 385
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	48, 105
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	5 cut(s)	121, 174, 270, 349, 366
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	3 cut(s)	187, 204, 214
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	148, 241
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	216, 291, 303, 308, 336, 385
CviKI_1	RGCY	6 cut(s)	216, 291, 303, 308, 336, 385
CviQI	GTAC	2 cut(s)	148, 241
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	187, 204
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	189, 234
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FaqI	GGGAC	2 cut(s)	103, 217
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	4 cut(s)	122, 266, 350, 357
FokI	GGATG	2 cut(s)	35, 92
Fsp4HI	GCNGC	4 cut(s)	122, 266, 350, 357
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	5 cut(s)	120, 173, 269, 348, 365
GluI	GCNGC	4 cut(s)	122, 266, 350, 357
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	2 cut(s)	271, 350
HaeIII	GGCC	2 cut(s)	216, 385
HapII	CCGG	5 cut(s)	69, 262, 321, 367, 386
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	5 cut(s)	121, 174, 270, 349, 366
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	5 cut(s)	119, 172, 268, 347, 364
HinP1I	GCGC	5 cut(s)	119, 172, 268, 347, 364
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	5 cut(s)	69, 262, 321, 367, 386
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	41, 185
HpyAV	CCTTC	4 cut(s)	43, 215, 336, 398
HpyCH4IV	ACGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 353
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	5 cut(s)	119, 172, 268, 347, 364
Kzo9I	GATC	1 cut(s)	317
Lsp1109I	GCAGC	3 cut(s)	277, 336, 343
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	319
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	1 cut(s)	317
MboII	GAAGA	2 cut(s)	70, 288
MhlI	GDGCHC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	110, 167
MspI	CCGG	5 cut(s)	69, 262, 321, 367, 386
MspR9I	CCNGG	3 cut(s)	191, 236, 368
MvaI	CCWGG	2 cut(s)	191, 236
MwoI	GCNNNNNNNGC	2 cut(s)	222, 353
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	205, 413
NmeAIII	GCCGAG	1 cut(s)	284
NsbI	TGCGCA	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	258
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	123, 267, 351, 358
PpuMI	RGGWCCY	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	189, 234
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	2 cut(s)	189, 234
PspN4I	GGNNCC	2 cut(s)	205, 413
PspPI	GGNCC	3 cut(s)	187, 204, 214
PspPPI	RGGWCCY	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	149, 242
RsaNI	GTAC	2 cut(s)	148, 241
RseI	CAYNNNNRTG	2 cut(s)	110, 167
SatI	GCNGC	4 cut(s)	122, 266, 350, 357
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	3 cut(s)	187, 204, 214
ScrFI	CCNGG	3 cut(s)	191, 236, 368
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	2 cut(s)	187, 204
SmiMI	CAYNNNNRTG	2 cut(s)	110, 167
SsiI	CCGC	4 cut(s)	103, 122, 139, 247
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	189, 234, 366
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	316, 373
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	258
TseI	GCWGC	3 cut(s)	265, 349, 356
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	71
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	187, 204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.