FvH4_3g16330

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010516
Physical Location & Seq
Forward (+)
10293981 .. 10298082
4102 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16330.t1

Sequence Viewer

Length: 705 bp
ATGACGTCGAACTGGAGCCAGATCCTAAGAGACGCTGCGGCAGCGGAGGTGGTCTTCTCCGGCGAGAAGCCGGAGAGCGAGTCGTTGCGGGAGATGGAGACCTTGCGGGAGCCGGAGATGGCAAGGCAACCGGAGCCGGAGTCGTTGCAACCGTTCTCGCCGTGCCTCTCCTACGTGGCGTCGCCGCTGAAAAACCTCTCCGACTCGTCGGCATCTAAGTGTTGTGACTTGTTCTCTTCGGCGGAGGAGTCCGGCAGCACCGTTTGCCTCTGCTACCTAGCTCATCTTCCGTCTTCGTTGAGACTGGGCAGGAGTGCATCGGGGATGGGCTGGGTTCGTGCCGAGATCAATGATGGTGCTGCCGGAGCGCGCTCGGGGCTCGGCTGGAGTTCGATCAGGGCTGGATCGTGGCTGGGGAAGGGCGCTGCTTGCTGGCGTGCGCCGGGGTCAGTGGAGGAGGCCGGTGTTCTCGTCCTCTTAGGTGGAGGAGGCCGTCGGGGACTACGACTCGTTCTCTTCGGTGGAGGAGGCCGTTGGGGACTACGACTCGTTCTCTTCGATGAAGTAACTGGTTACAGAGGAAATTCCGATGACCGGAGTCTGACGGCCGGTGACCGGAGTCTGGCAGTCGGGAAAATTCCGGTGACTGGAGTCCGGCGGCGTGTGACCAGAGTTCGATGTTCTGGCCAAGTATTTTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

235

Amino Acids

24.85

Weight (kDa)

8.69

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccII CGCG 1 cut(s) 370
AciI CCGC 7 cut(s) 38, 44, 88, 106, 185, 242, 658
AclWI GGATC 2 cut(s) 16, 412
AcoI YGGCCR 2 cut(s) 606, 685
AcsI RAATTY 2 cut(s) 583, 636
AcyI GRCGYC 2 cut(s) 5, 179
AfiI CCNNNNNNNGG 4 cut(s) 594, 615, 622, 647
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 3 cut(s) 24, 92, 295
AlwI GGATC 2 cut(s) 16, 412
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 5 cut(s) 459, 490, 529, 606, 685
ApeKI GCWGC 5 cut(s) 35, 41, 255, 359, 425
ApoI RAATTY 2 cut(s) 583, 636
AspLEI GCGC 4 cut(s) 370, 372, 425, 442
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 623, 655
AvaI CYCGRG 1 cut(s) 373
BalI TGGCCA 1 cut(s) 687
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 46, 285
BbvI GCAGC 5 cut(s) 22, 53, 267, 346, 412
BccI CCATC 4 cut(s) 88, 112, 319, 347
BceAI ACGGC 4 cut(s) 145, 477, 516, 621
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 3 cut(s) 24, 92, 295
BfaI CTAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 8 cut(s) 36, 39, 42, 185, 256, 360, 426, 659
BlsI GCNGC 8 cut(s) 37, 40, 43, 186, 257, 361, 427, 660
Bme1390I CCNGG 1 cut(s) 444
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 17, 111, 135
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 221, 326
BmuI ACTGGG 1 cut(s) 314
BoxI GACNNNNGTC 3 cut(s) 597, 618, 650
BpiI GAAGAC 2 cut(s) 46, 285
BpmI CTGGAG 3 cut(s) 34, 406, 669
BpuMI CCSGG 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 175
BsaHI GRCGYC 2 cut(s) 5, 179
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 4 cut(s) 130, 594, 615, 640
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 125, 155
Bsc4I CCNNNNNNNGG 4 cut(s) 594, 615, 622, 647
Bse118I RCCGGY 2 cut(s) 461, 608
Bse1I ACTGG 4 cut(s) 17, 309, 574, 652
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 4 cut(s) 594, 615, 622, 647
BseNI ACTGG 4 cut(s) 17, 309, 574, 652
BsePI GCGCGC 1 cut(s) 368
BseRI GAGGAG 4 cut(s) 260, 470, 501, 540
BseX3I CGGCCG 1 cut(s) 606
BseXI GCAGC 5 cut(s) 22, 53, 267, 346, 412
BseYI CCCAGC 2 cut(s) 330, 412
Bsh1236I CGCG 1 cut(s) 370
Bsh1285I CGRYCG 1 cut(s) 609
BshFI GGCC 5 cut(s) 461, 492, 531, 608, 687
BsiEI CGRYCG 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 373
BslFI GGGAC 2 cut(s) 513, 552
BslI CCNNNNNNNGG 4 cut(s) 594, 615, 622, 647
BsmAI GTCTC 3 cut(s) 24, 92, 295
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 513, 552
BsnI GGCC 5 cut(s) 461, 492, 531, 608, 687
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 21, 345, 393, 404
BspACI CCGC 7 cut(s) 38, 44, 88, 106, 185, 242, 658
BspANI GGCC 5 cut(s) 461, 492, 531, 608, 687
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 17, 111, 135
BspPI GGATC 2 cut(s) 16, 412
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 461, 608
BsrI ACTGG 4 cut(s) 17, 309, 574, 652
BssAI RCCGGY 2 cut(s) 461, 608
BssECI CCNNGG 1 cut(s) 443
BssHII GCGCGC 1 cut(s) 368
BssMI GATC 4 cut(s) 21, 345, 393, 404
BssNI GRCGYC 2 cut(s) 5, 179
Bst4CI ACNGT 2 cut(s) 153, 262
Bst6I CTCTTC 3 cut(s) 241, 521, 560
BstACI GRCGYC 2 cut(s) 5, 179
BstAPI GCANNNNNTGC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 4 cut(s) 370, 430, 434, 438
BstDEI CTNAG 3 cut(s) 26, 216, 478
BstEII GGTNACC 1 cut(s) 611
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 4 cut(s) 370, 372, 425, 442
BstKTI GATC 4 cut(s) 24, 348, 396, 407
BstMAI GTCTC 3 cut(s) 24, 92, 295
BstMBI GATC 4 cut(s) 21, 345, 393, 404
BstMCI CGRYCG 1 cut(s) 609
BstMWI GCNNNNNNNGC 6 cut(s) 41, 133, 264, 365, 376, 429
BstPAI GACNNNNGTC 3 cut(s) 597, 618, 650
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 442
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 5 cut(s) 22, 53, 267, 346, 412
BstV2I GAAGAC 2 cut(s) 46, 285
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 606
BsuRI GGCC 5 cut(s) 461, 492, 531, 608, 687
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 4 cut(s) 370, 430, 434, 438
CfoI GCGC 4 cut(s) 370, 372, 425, 442
Cfr10I RCCGGY 2 cut(s) 461, 608
CseI GACGC 2 cut(s) 41, 168
CviAII CATG 1 cut(s) 699
DdeI CTNAG 3 cut(s) 26, 216, 478
DpnI GATC 4 cut(s) 23, 347, 395, 406
DpnII GATC 4 cut(s) 21, 345, 393, 404
EaeI YGGCCR 2 cut(s) 606, 685
EagI CGGCCG 1 cut(s) 606
Eam1104I CTCTTC 3 cut(s) 241, 521, 560
EarI CTCTTC 3 cut(s) 241, 521, 560
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 373
Eco91I GGTNACC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 702
FaiI YATR 1 cut(s) 700
FaqI GGGAC 2 cut(s) 513, 552
FatI CATG 1 cut(s) 698
FauI CCCGC 2 cut(s) 81, 99
Fnu4HI GCNGC 8 cut(s) 36, 39, 42, 185, 256, 360, 426, 659
FokI GGATG 1 cut(s) 337
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 8 cut(s) 36, 39, 42, 185, 256, 360, 426, 659
FspBI CTAG 1 cut(s) 278
GlaI GCGC 4 cut(s) 369, 371, 424, 441
GluI GCNGC 8 cut(s) 36, 39, 42, 185, 256, 360, 426, 659
GsaI CCCAGC 2 cut(s) 334, 416
GsuI CTGGAG 3 cut(s) 34, 406, 669
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 5 cut(s) 461, 492, 531, 608, 687
HgaI GACGC 2 cut(s) 41, 168
HhaI GCGC 4 cut(s) 370, 372, 425, 442
Hin1I GRCGYC 2 cut(s) 5, 179
Hin1II CATG 1 cut(s) 702
Hin6I GCGC 4 cut(s) 368, 370, 423, 440
HinP1I GCGC 4 cut(s) 368, 370, 423, 440
HinfI GANTC 9 cut(s) 80, 140, 203, 248, 507, 546, 598, 619, 651
HphI GGTGA 2 cut(s) 623, 655
Hpy188I TCNGA 3 cut(s) 202, 589, 603
Hpy188III TCNNGA 1 cut(s) 631
Hpy99I CGWCG 4 cut(s) 10, 184, 211, 498
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 2 cut(s) 153, 262
HpyCH4IV ACGT 2 cut(s) 5, 174
HpyCH4V TGCA 2 cut(s) 148, 317
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 133, 264, 365, 376, 429
HpyF3I CTNAG 3 cut(s) 26, 216, 478
HpySE526I ACGT 2 cut(s) 5, 174
Hsp92I GRCGYC 2 cut(s) 5, 179
Hsp92II CATG 1 cut(s) 702
HspAI GCGC 4 cut(s) 368, 370, 423, 440
Kzo9I GATC 4 cut(s) 21, 345, 393, 404
LmnI GCTCC 4 cut(s) 15, 109, 133, 365
Lsp1109I GCAGC 5 cut(s) 22, 53, 267, 346, 412
LweI GCATC 2 cut(s) 221, 326
MaeI CTAG 1 cut(s) 278
MaeII ACGT 2 cut(s) 5, 174
MaeIII GTNAC 6 cut(s) 224, 565, 572, 611, 643, 664
MalI GATC 4 cut(s) 23, 347, 395, 406
MboI GATC 4 cut(s) 21, 345, 393, 404
MboII GAAGA 6 cut(s) 46, 228, 278, 285, 508, 547
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 2 cut(s) 583, 636
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 9 cut(s) 89, 149, 197, 257, 501, 540, 607, 628, 660
MmeI TCCRAC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 687
MscI TGGCCA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 217
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 2 cut(s) 44, 187
MspR9I CCNGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 6 cut(s) 41, 133, 264, 365, 376, 429
NciI CCSGG 1 cut(s) 444
NdeII GATC 4 cut(s) 21, 345, 393, 404
NlaIII CATG 1 cut(s) 702
NlaIV GGNNCC 3 cut(s) 17, 111, 135
NmeAIII GCCGAG 2 cut(s) 360, 367
NmuCI GTSAC 4 cut(s) 224, 611, 643, 664
PauI GCGCGC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 3 cut(s) 149, 502, 555
PkrI GCNGC 8 cut(s) 37, 40, 43, 186, 257, 361, 427, 660
PleI GAGTC 9 cut(s) 88, 148, 197, 256, 501, 540, 606, 627, 659
PpsI GAGTC 9 cut(s) 88, 148, 197, 256, 501, 540, 606, 627, 659
Ppu21I YACGTR 1 cut(s) 175
PshAI GACNNNNGTC 3 cut(s) 597, 618, 650
PspEI GGTNACC 1 cut(s) 611
PspFI CCCAGC 2 cut(s) 330, 412
PspN4I GGNNCC 3 cut(s) 17, 111, 135
PsuI RGATCY 1 cut(s) 21
PteI GCGCGC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 217
SatI GCNGC 8 cut(s) 36, 39, 42, 185, 256, 360, 426, 659
Sau3AI GATC 4 cut(s) 21, 345, 393, 404
SchI GAGTC 9 cut(s) 89, 149, 197, 257, 501, 540, 607, 628, 660
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 381
SetI ASST 8 cut(s) 8, 51, 104, 177, 198, 279, 283, 484
SfaNI GCATC 2 cut(s) 221, 326
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 2 cut(s) 583, 636
SsiI CCGC 7 cut(s) 38, 44, 88, 106, 185, 242, 658
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 153, 262
TaiI ACGT 2 cut(s) 8, 177
TaqI TCGA 4 cut(s) 8, 392, 558, 676
TasI AATT 2 cut(s) 583, 636
TauI GCSGC 3 cut(s) 41, 187, 661
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 4 cut(s) 224, 611, 643, 664
TseI GCWGC 5 cut(s) 35, 41, 255, 359, 425
Tsp45I GTSAC 4 cut(s) 224, 611, 643, 664
TspDTI ATGAA 2 cut(s) 576, 687
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 456
XapI RAATTY 2 cut(s) 583, 636
XspI CTAG 1 cut(s) 278
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.