FvH4_5g30192

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010516
Physical Location & Seq
Forward (+)
21105864 .. 21107473
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30192.t1

Sequence Viewer

Length: 288 bp
ATGGCTGATCAACAAGCTACCGGCGCCGACAAAAGCAGTCACCTGAACGACCCCAGCCAACATCCCGTCAAGGAGGCTGCACCAGTTTTTAGTTCCATCAAAAGCACTGTCAAGAGCGACACATTTCAGATAACTGGTTACAGAGGAAAATCCGGTGACCGAAATCCGGCGGTCGGGGAAAATCCGGTGACCGGAATCCGACGGTCGGGGAATTCCGGTGTCCGGTGTCCGGCGGCCGGTGACAGGAGTCCAGCGGCCGGTGACCGGAGTACGGCGGCCAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

9.76

Weight (kDa)

8.98

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 4 cut(s) 170, 233, 254, 275
AcoI YGGCCR 3 cut(s) 234, 255, 276
AcsI RAATTY 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 271
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AoxI GGCC 3 cut(s) 234, 255, 276
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 5 cut(s) 32, 167, 199, 251, 272
BanI GGYRCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 104
BclI TGATCA 1 cut(s) 7
BfaI CTAG 1 cut(s) 286
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 4 cut(s) 78, 234, 255, 276
BlsI GCNGC 4 cut(s) 79, 235, 256, 277
BmiI GGNNCC 1 cut(s) 25
BoxI GACNNNNGTC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 24
BsaWI WCCGGW 6 cut(s) 152, 184, 191, 215, 222, 264
Bse118I RCCGGY 3 cut(s) 20, 236, 257
Bse1I ACTGG 3 cut(s) 83, 139, 279
BseGI GGATG 1 cut(s) 61
BseNI ACTGG 3 cut(s) 83, 139, 279
BseX3I CGGCCG 2 cut(s) 234, 255
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 63
Bsh1285I CGRYCG 4 cut(s) 174, 206, 237, 258
BshFI GGCC 3 cut(s) 236, 257, 278
BshNI GGYRCC 1 cut(s) 23
BsiEI CGRYCG 4 cut(s) 174, 206, 237, 258
BsnI GGCC 3 cut(s) 236, 257, 278
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 4 cut(s) 170, 233, 254, 275
BspANI GGCC 3 cut(s) 236, 257, 278
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BsrFI RCCGGY 3 cut(s) 20, 236, 257
BsrI ACTGG 3 cut(s) 83, 139, 279
BssAI RCCGGY 3 cut(s) 20, 236, 257
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 109, 204
BstACI GRCGYC 1 cut(s) 24
BstEII GGTNACC 3 cut(s) 155, 187, 260
BstF5I GGATG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 4 cut(s) 174, 206, 237, 258
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 246
BstPI GGTNACC 3 cut(s) 155, 187, 260
BstV1I GCAGC 1 cut(s) 64
BstZI CGGCCG 2 cut(s) 234, 255
BsuRI GGCC 3 cut(s) 236, 257, 278
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 105, 286
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 3 cut(s) 20, 236, 257
Csp6I GTAC 1 cut(s) 270
CviJI RGCY 7 cut(s) 5, 17, 57, 77, 236, 257, 278
CviKI_1 RGCY 7 cut(s) 5, 17, 57, 77, 236, 257, 278
CviQI GTAC 1 cut(s) 270
DinI GGCGCC 1 cut(s) 25
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 3 cut(s) 234, 255, 276
EagI CGGCCG 2 cut(s) 234, 255
EclXI CGGCCG 2 cut(s) 234, 255
Eco52I CGGCCG 2 cut(s) 234, 255
Eco91I GGTNACC 3 cut(s) 155, 187, 260
EcoO65I GGTNACC 3 cut(s) 155, 187, 260
EcoRI GAATTC 1 cut(s) 211
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 78, 234, 255, 276
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 78, 234, 255, 276
FspBI CTAG 1 cut(s) 286
GlaI GCGC 1 cut(s) 25
GluI GCNGC 4 cut(s) 78, 234, 255, 276
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 3 cut(s) 236, 257, 278
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 2 cut(s) 195, 247
HphI GGTGA 5 cut(s) 32, 167, 199, 251, 272
Hpy188I TCNGA 2 cut(s) 129, 200
Hpy188III TCNNGA 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 109, 204
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 7
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 286
MaeIII GTNAC 7 cut(s) 38, 137, 155, 187, 239, 260, 281
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MluCI AATT 1 cut(s) 211
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 67, 137
MspA1I CMGCKG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 23
NarI GGCGCC 1 cut(s) 24
NdeII GATC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 6 cut(s) 38, 155, 187, 239, 260, 281
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 4 cut(s) 79, 235, 256, 277
PleI GAGTC 1 cut(s) 255
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 255
PshAI GACNNNNGTC 1 cut(s) 246
PspEI GGTNACC 3 cut(s) 155, 187, 260
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SatI GCNGC 4 cut(s) 78, 234, 255, 276
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 256
SetI ASST 2 cut(s) 19, 45
SfoI GGCGCC 1 cut(s) 25
Sse9I AATT 1 cut(s) 211
SsiI CCGC 4 cut(s) 170, 233, 254, 275
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 109, 204
TaqII GACCGA 1 cut(s) 174
TasI AATT 1 cut(s) 211
TauI GCSGC 3 cut(s) 236, 257, 278
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 2 cut(s) 112, 286
TseFI GTSAC 6 cut(s) 38, 155, 187, 239, 260, 281
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 6 cut(s) 38, 155, 187, 239, 260, 281
TspRI CASTG 2 cut(s) 112, 286
XapI RAATTY 1 cut(s) 211
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.