Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010516

Physical Location & Seq

Genomic Coordinates Forward (+)

5736050 .. 5737412

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06431.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCTAATACATCCTGCCCACACAAGCACCGCTGCTTCATCTCCTCCGACCACCTTCTCTTCTCGATCCACCTTCTACCGCGCTCAATCACCCGGTCCCCGACGCCGCCGTCGTCTCTTCTGCCGCAACCCAACCTTGTCGTCCCACTCGCCGGCGCCGCCACCACCGCCTTCACCCTCCTCTTCTTCCTCCTCGTCTGCTTCCGCAAAATCACCCGAAACCGCACAGCCCCGGAAGCCGGCTCTAAGCTGCCTCACCGCTTCTCCTACTCCCCTGGAAGGGCGTTGCTTGCTAGCGTGCGCCGGGGTTGGTGGAGGAGGCCGGTGTGCTCACCGTCGGGGAAGGTGGGTGCCCAGAGAAGAAATGTGGGTGCTCACCGTCGGGCCGGTTCCTTAGTTCTCTCCTCTCCGGGAAATTCCGGTGACCGGAATCCGGCGATCGGGGAAATTCCGGTGACCGGAGTCCGGCGGCCGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

18.49

Weight (kDa)

11.92

Isoelectric Point (pI)

67.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09570 FvH4_1g13492 FvH4_1g20681 FvH4_2g13381 FvH4_2g38462 FvH4_3g16330 FvH4_3g32140 FvH4_3g34152 FvH4_3g34592 FvH4_4g06431 FvH4_4g07671 FvH4_4g09351 FvH4_4g13941 FvH4_4g17662 FvH4_5g13181 FvH4_5g30192 FvH4_5g34551 FvH4_5g36050 FvH4_6g13191 FvH4_7g24551
rosa_chinensis	RchiOBHm_Chr5g0039671

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AccB1I	GGYRCC	2 cut(s)	155, 350
AccII	CGCG	1 cut(s)	82
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	2 cut(s)	470, 496
AcsI	RAATTY	2 cut(s)	415, 447
AcyI	GRCGYC	2 cut(s)	104, 156
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw21I	GWGCWC	2 cut(s)	332, 376
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	4 cut(s)	320, 384, 470, 496
ApeKI	GCWGC	2 cut(s)	33, 250
ApoI	RAATTY	2 cut(s)	415, 447
AspLEI	GCGC	3 cut(s)	84, 158, 303
AspS9I	GGNCC	2 cut(s)	96, 384
AsuC2I	CCSGG	4 cut(s)	94, 233, 305, 411
AsuHPI	GGTGA	9 cut(s)	82, 166, 205, 248, 324, 368, 434, 466, 487
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	355
BanI	GGYRCC	2 cut(s)	155, 350
Bbv12I	GWGCWC	2 cut(s)	332, 376
BbvI	GCAGC	2 cut(s)	20, 237
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	4 cut(s)	94, 233, 305, 411
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	6 cut(s)	34, 107, 125, 159, 251, 470
BlsI	GCNGC	6 cut(s)	35, 108, 126, 160, 252, 471
Bme1390I	CCNGG	5 cut(s)	94, 233, 276, 305, 411
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	96, 384
BmiI	GGNNCC	5 cut(s)	98, 157, 352, 391, 493
BmrFI	CCNGG	5 cut(s)	94, 233, 276, 305, 411
BmtI	GCTAGC	1 cut(s)	297
BoxI	GACNNNNGTC	2 cut(s)	461, 482
BpuMI	CCSGG	4 cut(s)	94, 233, 305, 411
BsaHI	GRCGYC	2 cut(s)	104, 156
BsaJI	CCNNGG	4 cut(s)	231, 274, 304, 487
BsaWI	WCCGGW	5 cut(s)	419, 426, 451, 458, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bse118I	RCCGGY	5 cut(s)	152, 239, 322, 386, 472
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	231, 274, 304, 487
BseGI	GGATG	1 cut(s)	11
BseRI	GAGGAG	5 cut(s)	34, 170, 182, 331, 394
BseSI	GKGCMC	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	20, 237
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	2 cut(s)	441, 473
BshFI	GGCC	4 cut(s)	322, 386, 472, 498
BshNI	GGYRCC	2 cut(s)	155, 350
BsiEI	CGRYCG	2 cut(s)	441, 473
BsiHKAI	GWGCWC	2 cut(s)	332, 376
BslFI	GGGAC	2 cut(s)	82, 128
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	82, 128
BsnI	GGCC	4 cut(s)	322, 386, 472, 498
Bsp1286I	GDGCHC	3 cut(s)	332, 355, 376
Bsp143I	GATC	2 cut(s)	66, 438
BspANI	GGCC	4 cut(s)	322, 386, 472, 498
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	5 cut(s)	98, 157, 352, 391, 493
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	61
BspT107I	GGYRCC	2 cut(s)	155, 350
BsrFI	RCCGGY	5 cut(s)	152, 239, 322, 386, 472
BssAI	RCCGGY	5 cut(s)	152, 239, 322, 386, 472
BssECI	CCNNGG	4 cut(s)	231, 274, 304, 487
BssMI	GATC	2 cut(s)	66, 438
BssNI	GRCGYC	2 cut(s)	104, 156
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	336, 380
Bst6I	CTCTTC	3 cut(s)	65, 123, 188
BstACI	GRCGYC	2 cut(s)	104, 156
BstC8I	GCNNGC	5 cut(s)	154, 241, 291, 295, 299
BstDEI	CTNAG	2 cut(s)	246, 394
BstEII	GGTNACC	3 cut(s)	422, 454, 475
BstF5I	GGATG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	84, 158, 303
BstKTI	GATC	2 cut(s)	69, 441
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	66, 438
BstMCI	CGRYCG	2 cut(s)	441, 473
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 167, 236, 290
BstNI	CCWGG	1 cut(s)	276
BstPAI	GACNNNNGTC	2 cut(s)	461, 482
BstPI	GGTNACC	3 cut(s)	422, 454, 475
BstSCI	CCNGG	5 cut(s)	92, 231, 274, 303, 409
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	20, 237
BstZI	CGGCCG	1 cut(s)	470
BsuRI	GGCC	4 cut(s)	322, 386, 472, 498
BtsCI	GGATG	1 cut(s)	11
Cac8I	GCNNGC	5 cut(s)	154, 241, 291, 295, 299
CfoI	GCGC	3 cut(s)	84, 158, 303
Cfr10I	RCCGGY	5 cut(s)	152, 239, 322, 386, 472
Cfr13I	GGNCC	2 cut(s)	96, 384
CseI	GACGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	510
CviJI	RGCY	8 cut(s)	230, 239, 243, 250, 322, 386, 472, 498
CviKI_1	RGCY	8 cut(s)	230, 239, 243, 250, 322, 386, 472, 498
DdeI	CTNAG	2 cut(s)	246, 394
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	2 cut(s)	68, 440
DpnII	GATC	2 cut(s)	66, 438
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	2 cut(s)	470, 496
EagI	CGGCCG	1 cut(s)	470
Eam1104I	CTCTTC	3 cut(s)	65, 123, 188
EarI	CTCTTC	3 cut(s)	65, 123, 188
EclXI	CGGCCG	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	470
Eco91I	GGTNACC	3 cut(s)	422, 454, 475
EcoO65I	GGTNACC	3 cut(s)	422, 454, 475
EcoRII	CCWGG	1 cut(s)	274
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	1 cut(s)	513
FaiI	YATR	1 cut(s)	511
FaqI	GGGAC	2 cut(s)	82, 128
FatI	CATG	1 cut(s)	509
Fnu4HI	GCNGC	6 cut(s)	34, 107, 125, 159, 251, 470
Fsp4HI	GCNGC	6 cut(s)	34, 107, 125, 159, 251, 470
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	3 cut(s)	83, 157, 302
GluI	GCNGC	6 cut(s)	34, 107, 125, 159, 251, 470
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	322, 386, 472, 498
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	3 cut(s)	84, 158, 303
Hin1I	GRCGYC	2 cut(s)	104, 156
Hin1II	CATG	1 cut(s)	513
Hin6I	GCGC	3 cut(s)	82, 156, 301
HinP1I	GCGC	3 cut(s)	82, 156, 301
HinfI	GANTC	3 cut(s)	430, 462, 483
HphI	GGTGA	9 cut(s)	82, 166, 205, 248, 324, 368, 434, 466, 487
Hpy188I	TCNGA	2 cut(s)	49, 488
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	4 cut(s)	106, 115, 340, 384
HpyAV	CCTTC	5 cut(s)	65, 83, 181, 273, 337
HpyCH4III	ACNGT	2 cut(s)	336, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 167, 236, 290
HpyF3I	CTNAG	2 cut(s)	246, 394
Hsp92I	GRCGYC	2 cut(s)	104, 156
Hsp92II	CATG	1 cut(s)	513
HspAI	GCGC	3 cut(s)	82, 156, 301
KasI	GGCGCC	1 cut(s)	155
KroI	GCCGGC	2 cut(s)	152, 239
KroNI	GCCGGC	2 cut(s)	154, 241
Kzo9I	GATC	2 cut(s)	66, 438
Lsp1109I	GCAGC	2 cut(s)	20, 237
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	422, 454, 475
MalI	GATC	2 cut(s)	68, 440
MboI	GATC	2 cut(s)	66, 438
MboII	GAAGA	5 cut(s)	52, 110, 175, 178, 372
MhlI	GDGCHC	3 cut(s)	332, 355, 376
MluCI	AATT	2 cut(s)	415, 447
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	471, 492
MmeI	TCCRAC	1 cut(s)	72
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	2 cut(s)	152, 239
MspA1I	CMGCKG	1 cut(s)	33
MspR9I	CCNGG	5 cut(s)	94, 233, 276, 305, 411
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	4 cut(s)	158, 167, 236, 290
NaeI	GCCGGC	2 cut(s)	154, 241
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	4 cut(s)	94, 233, 305, 411
NdeII	GATC	2 cut(s)	66, 438
NgoMIV	GCCGGC	2 cut(s)	152, 239
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	513
NlaIV	GGNNCC	5 cut(s)	98, 157, 352, 391, 493
NmuCI	GTSAC	3 cut(s)	422, 454, 475
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdiI	GCCGGC	2 cut(s)	154, 241
PfeI	GAWTC	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	6 cut(s)	35, 108, 126, 160, 252, 471
Ple19I	CGATCG	1 cut(s)	441
PleI	GAGTC	2 cut(s)	470, 491
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	2 cut(s)	470, 491
PshAI	GACNNNNGTC	2 cut(s)	461, 482
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	3 cut(s)	422, 454, 475
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	98, 157, 352, 391, 493
PspPI	GGNCC	2 cut(s)	96, 384
PvuI	CGATCG	1 cut(s)	441
SatI	GCNGC	6 cut(s)	34, 107, 125, 159, 251, 470
Sau3AI	GATC	2 cut(s)	66, 438
Sau96I	GGNCC	2 cut(s)	96, 384
SchI	GAGTC	2 cut(s)	471, 492
ScrFI	CCNGG	5 cut(s)	94, 233, 276, 305, 411
SduI	GDGCHC	3 cut(s)	332, 355, 376
SetI	ASST	6 cut(s)	57, 75, 138, 252, 348, 493
SfoI	GGCGCC	1 cut(s)	157
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	96
Sse9I	AATT	2 cut(s)	415, 447
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	5 cut(s)	92, 231, 274, 303, 409
TaaI	ACNGT	2 cut(s)	336, 380
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	415, 447
TauI	GCSGC	4 cut(s)	109, 127, 161, 472
TfiI	GAWTC	1 cut(s)	430
TseFI	GTSAC	3 cut(s)	422, 454, 475
TseI	GCWGC	2 cut(s)	33, 250
Tsp45I	GTSAC	3 cut(s)	422, 454, 475
TspDTI	ATGAA	2 cut(s)	28, 498
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	2 cut(s)	415, 447
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.