FvH4_7g24551

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010516
Physical Location & Seq
Forward (+)
18934812 .. 18936470
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24551.t1

Sequence Viewer

Length: 474 bp
ATGTCGGAGGCCGTTTGGCCGGAGTCAGATCATCTGATAGTTTTGCGGCAATGGGTGTCGATGGTTAATGCTTTTGTGAATTCTAATGTTCGTGCCGAGATCGATGATGGTGCTGCTGGGGCGCGCTCGGGGCTCTGCTGGAGTTCGATCCGGGCTGGATCGTGGCTAGATTGTGGCTGGGGAAGGGCGTTGCTTGCCGACGTGCGCCGGGGTCTGTGGAGGAGGCCGGTGTTCTCATTCTCTTCAGTGGAGGAGGCCGTCGGGGAATGCAACTCGTTCTCTTCGGTGGAGGAGGCCGCCGGGGACTGCAACTTGTTCTCTTCGGTGAAGGTGGGTGCCCAGAGAAAAAACCTGGGTGCCCAGTTCATGGGAAAATCCGGTGACCGGAATCCGGCGGTTAGGGAAATTCCGGTGACCGAAATTCGGCGGCCGGTGACCGGAGTCCGAGGTTCCGGCCAAGTCTTTTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

158

Amino Acids

17.04

Weight (kDa)

7.63

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 335, 356
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 1 cut(s) 124
AciI CCGC 4 cut(s) 46, 297, 395, 427
AclWI GGATC 2 cut(s) 142, 166
AcoI YGGCCR 3 cut(s) 17, 428, 454
AcsI RAATTY 3 cut(s) 79, 405, 420
AcuI CTGAAG 1 cut(s) 228
AfiI CCNNNNNNNGG 5 cut(s) 367, 384, 391, 423, 437
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 351
AlwI GGATC 2 cut(s) 142, 166
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 7 cut(s) 9, 17, 224, 255, 294, 428, 454
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 3 cut(s) 79, 405, 420
AspLEI GCGC 3 cut(s) 124, 126, 207
AsuC2I CCSGG 3 cut(s) 152, 209, 301
AsuHPI GGTGA 4 cut(s) 337, 392, 424, 445
AvaI CYCGRG 1 cut(s) 127
BaeGI GKGCMC 2 cut(s) 340, 361
BanI GGYRCC 2 cut(s) 335, 356
BanII GRGCYC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 55, 101
BceAI ACGGC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 3 cut(s) 152, 209, 301
BfaI CTAG 1 cut(s) 167
BisI GCNGC 4 cut(s) 47, 114, 297, 428
BlsI GCNGC 4 cut(s) 48, 115, 298, 429
Bme1390I CCNGG 4 cut(s) 152, 209, 301, 353
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 337, 358, 451
BmrFI CCNGG 4 cut(s) 152, 209, 301, 353
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 160
BpuMI CCSGG 3 cut(s) 152, 209, 301
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 208, 300, 352, 445
BsaWI WCCGGW 4 cut(s) 377, 384, 409, 437
Bsc4I CCNNNNNNNGG 5 cut(s) 367, 384, 391, 423, 437
Bse118I RCCGGY 2 cut(s) 226, 430
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 208, 300, 352, 445
BseLI CCNNNNNNNGG 5 cut(s) 367, 384, 391, 423, 437
BseMI GCAATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 361
BsePI GCGCGC 1 cut(s) 122
BseRI GAGGAG 3 cut(s) 235, 266, 305
BseSI GKGCMC 2 cut(s) 340, 361
BseX3I CGGCCG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 2 cut(s) 116, 177
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 431
BshFI GGCC 7 cut(s) 11, 19, 226, 257, 296, 430, 456
BshNI GGYRCC 2 cut(s) 335, 356
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 5 cut(s) 367, 384, 391, 423, 437
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 7 cut(s) 11, 19, 226, 257, 296, 430, 456
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 3 cut(s) 135, 340, 361
Bsp143I GATC 4 cut(s) 28, 99, 147, 158
BspACI CCGC 4 cut(s) 46, 297, 395, 427
BspANI GGCC 7 cut(s) 11, 19, 226, 257, 296, 430, 456
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 337, 358, 451
BspPI GGATC 2 cut(s) 142, 166
BspT107I GGYRCC 2 cut(s) 335, 356
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 226, 430
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 2 cut(s) 226, 430
BssECI CCNNGG 4 cut(s) 208, 300, 352, 445
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 4 cut(s) 28, 99, 147, 158
Bst2UI CCWGG 1 cut(s) 353
Bst6I CTCTTC 3 cut(s) 247, 286, 325
BstC8I GCNNGC 2 cut(s) 124, 195
BstEII GGTNACC 3 cut(s) 380, 412, 433
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 3 cut(s) 124, 126, 207
BstKTI GATC 4 cut(s) 31, 102, 150, 161
BstMBI GATC 4 cut(s) 28, 99, 147, 158
BstMCI CGRYCG 1 cut(s) 431
BstMWI GCNNNNNNNGC 3 cut(s) 119, 130, 194
BstNI CCWGG 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 440
BstPI GGTNACC 3 cut(s) 380, 412, 433
BstSCI CCNGG 4 cut(s) 150, 207, 299, 351
BstSLI GKGCMC 2 cut(s) 340, 361
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 7 cut(s) 11, 19, 226, 257, 296, 430, 456
BsuTUI ATCGAT 1 cut(s) 102
BtrI CACGTC 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 124, 195
CfoI GCGC 3 cut(s) 124, 126, 207
Cfr10I RCCGGY 2 cut(s) 226, 430
ClaI ATCGAT 1 cut(s) 102
CviAII CATG 2 cut(s) 367, 468
DpnI GATC 4 cut(s) 30, 101, 149, 160
DpnII GATC 4 cut(s) 28, 99, 147, 158
EaeI YGGCCR 3 cut(s) 17, 428, 454
EagI CGGCCG 1 cut(s) 428
Eam1104I CTCTTC 3 cut(s) 247, 286, 325
EarI CTCTTC 3 cut(s) 247, 286, 325
EclXI CGGCCG 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 127
Eco91I GGTNACC 3 cut(s) 380, 412, 433
EcoO65I GGTNACC 3 cut(s) 380, 412, 433
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 2 cut(s) 370, 471
FaiI YATR 2 cut(s) 368, 469
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 366, 467
Fnu4HI GCNGC 4 cut(s) 47, 114, 297, 428
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 47, 114, 297, 428
FspBI CTAG 1 cut(s) 167
GlaI GCGC 3 cut(s) 123, 125, 206
GluI GCNGC 4 cut(s) 47, 114, 297, 428
GsaI CCCAGC 2 cut(s) 120, 181
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 7 cut(s) 11, 19, 226, 257, 296, 430, 456
HhaI GCGC 3 cut(s) 124, 126, 207
Hin1II CATG 2 cut(s) 370, 471
Hin6I GCGC 3 cut(s) 122, 124, 205
HinP1I GCGC 3 cut(s) 122, 124, 205
HinfI GANTC 3 cut(s) 23, 388, 441
HphI GGTGA 4 cut(s) 337, 392, 424, 445
Hpy188I TCNGA 4 cut(s) 7, 28, 36, 446
Hpy99I CGWCG 2 cut(s) 203, 263
HpyAV CCTTC 2 cut(s) 177, 322
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 270, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 130, 194
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 370, 471
HspAI GCGC 3 cut(s) 122, 124, 205
Kzo9I GATC 4 cut(s) 28, 99, 147, 158
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 380, 412, 433
MalI GATC 4 cut(s) 30, 101, 149, 160
MboI GATC 4 cut(s) 28, 99, 147, 158
MboII GAAGA 3 cut(s) 234, 273, 312
MhlI GDGCHC 3 cut(s) 135, 340, 361
MluCI AATT 3 cut(s) 79, 405, 420
MlyI GAGTC 2 cut(s) 32, 450
MnlI CCTC 7 cut(s) 213, 216, 244, 247, 283, 286, 440
MseI TTAA 1 cut(s) 66
MspR9I CCNGG 4 cut(s) 152, 209, 301, 353
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 119, 130, 194
NciI CCSGG 3 cut(s) 152, 209, 301
NdeII GATC 4 cut(s) 28, 99, 147, 158
NlaIII CATG 2 cut(s) 370, 471
NlaIV GGNNCC 3 cut(s) 337, 358, 451
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 380, 412, 433
PauI GCGCGC 1 cut(s) 122
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 4 cut(s) 48, 115, 298, 429
PleI GAGTC 2 cut(s) 31, 449
PpsI GAGTC 2 cut(s) 31, 449
PshAI GACNNNNGTC 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 351
PspEI GGTNACC 3 cut(s) 380, 412, 433
PspFI CCCAGC 2 cut(s) 116, 177
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 337, 358, 451
PteI GCGCGC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 4 cut(s) 47, 114, 297, 428
Sau3AI GATC 4 cut(s) 28, 99, 147, 158
SchI GAGTC 2 cut(s) 32, 450
ScrFI CCNGG 4 cut(s) 152, 209, 301, 353
SduI GDGCHC 3 cut(s) 135, 340, 361
SetI ASST 4 cut(s) 204, 333, 354, 451
Sse9I AATT 3 cut(s) 79, 405, 420
SsiI CCGC 4 cut(s) 46, 297, 395, 427
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 4 cut(s) 150, 207, 299, 351
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 59, 102, 146
TaqII GACCGA 1 cut(s) 431
TasI AATT 3 cut(s) 79, 405, 420
TauI GCSGC 3 cut(s) 49, 299, 430
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 3 cut(s) 380, 412, 433
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 3 cut(s) 380, 412, 433
TspDTI ATGAA 2 cut(s) 355, 456
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 367
XapI RAATTY 3 cut(s) 79, 405, 420
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.