FvH4_1g11471
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002173
Physical Location & Seq
Forward (+)
6257352 .. 6259421
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11471.t1

Sequence Viewer

Length: 1035 bp
ATGACAGAGTTTGCTAGCAATGTTAGATTTGGCAGTCTCAGTTCTTTGTACAGTCACTTGTTGAAGTTTAACTTTATTAGAGCAGGAGTCTTTTTAGTCTTTTCATTTTTCAATCCTCAAGGGAGAGTTGGGCTTTTTTCAAGGATGGCTAGCCATGTTACTCGGTCGAGGGTGCAGGCACAGCTTCAGGAGCAACAAGCAAAAGCTAGGTGGAATACACATCTTACCAAGATACTTGCAAGTTTAATGGTTGATCAAGTACACCAAGGGAACACAAAGAACAGTTACTTTGGCATGAAAGCATGGAAATATATCTGCGATGAATTCTACAAGAGAACGGGTCTGAAGTGGGACAAGGAACTGAAGAACCGATATGCAGATATGAGGAAGATATATGTTATAATCAAGTCACTTCTTGATCGTAGTGATATCAGTTGGGATGAAGCCACAGGGACTATCACAGCCAGTGATGAAGTATGGGCTGAATACACAAAGGAACATGCTGAAGCAGAGGCTTTAAGAAACAGTGGCTGCCCAATATACAAAGAACTATGTATAATATTTTCAGAACCAGCGACCAACGGAAAGCATGACCTTCCAAATGAACACGAGGAAGGGACTCCTAATTTTCATCAATTGGACCCATTGTCCTTCCAGCAAGTAGTACTTTCCTCATCGGAATCTGAGGAAGCAGATGCTGCTGCAGATCATAAAGAAACAGTTCAACCCATTATGCCCAGCAGTGCTGGCATCCGCAAAAGAGGGCGCAAGGGCATTGATGATGCCATCGCAGGAGCCATCTTAGAGATGGCAGCTGCATCAAAGCTGAGAAAAGCTGCTATACAGCAACGTGACGCCAGATATACCATAACTAATTGTATTAAAGCTCTGGATGAGATGAAAGGTGTTGATGAGCAAGTCTATTTCGCTGCTATTGATCTGTTCAACGATCCCACTGCAAGGGAGTTGTTCCTGTCTCTCAAACGTGACAAGCGCTTGATTTGGTTGCAGCGCAAGTGCAGATCAAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

345

Amino Acids

39.16

Weight (kDa)

8.8

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 70 - 163 1.8e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AciI CCGC 1 cut(s) 754
AclWI GGATC 1 cut(s) 944
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 4 cut(s) 170, 365, 383, 525
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 3 cut(s) 50, 261, 666
AfeI AGCGCT 1 cut(s) 995
AfiI CCNNNNNNNGG 1 cut(s) 960
AgsI TTSAA 5 cut(s) 64, 112, 141, 725, 946
AhdI GACNNNNNGTC 1 cut(s) 646
AluBI AGCT 7 cut(s) 184, 206, 815, 826, 836, 887, 1032
AluI AGCT 7 cut(s) 184, 206, 815, 826, 836, 887, 1032
Alw26I GTCTC 2 cut(s) 41, 981
AlwI GGATC 1 cut(s) 944
AlwNI CAGNNNCTG 2 cut(s) 531, 698
Aor51HI AGCGCT 1 cut(s) 995
ApeKI GCWGC 9 cut(s) 531, 698, 701, 812, 815, 836, 929, 1009, 1029
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 3 cut(s) 768, 996, 1014
AspS9I GGNCC 1 cut(s) 640
AsuNHI GCTAGC 2 cut(s) 14, 149
AvaII GGWCC 1 cut(s) 640
BauI CACGAG 1 cut(s) 608
BbvI GCAGC 8 cut(s) 518, 685, 688, 802, 823, 824, 916, 1021
BccI CCATC 4 cut(s) 139, 794, 802, 806
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 41, 981
BfaI CTAG 3 cut(s) 15, 150, 207
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 997
BisI GCNGC 9 cut(s) 532, 699, 702, 813, 816, 837, 930, 1010, 1030
BlsI GCNGC 9 cut(s) 533, 700, 703, 814, 817, 838, 931, 1011, 1031
BmcAI AGTACT 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 640
BmeRI GACNNNNNGTC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 2 cut(s) 642, 796
BmsI GCATC 4 cut(s) 685, 759, 772, 827
BmtI GCTAGC 2 cut(s) 18, 153
BpuEI CTTGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 855
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 960
Bse1I ACTGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 4 cut(s) 150, 445, 750, 898
BseLI CCNNNNNNNGG 1 cut(s) 960
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 52, 675, 818
BseNI ACTGG 1 cut(s) 465
BseXI GCAGC 8 cut(s) 518, 685, 688, 802, 823, 824, 916, 1021
BseYI CCCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 167
BslFI GGGAC 3 cut(s) 365, 466, 631
BslI CCNNNNNNNGG 1 cut(s) 960
BsmAI GTCTC 2 cut(s) 41, 981
BsmFI GGGAC 3 cut(s) 365, 466, 631
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
BspACI CCGC 1 cut(s) 754
BspCNI CTCAG 3 cut(s) 51, 676, 819
BspLI GGNNCC 2 cut(s) 642, 796
BspMAI CTGCAG 1 cut(s) 706
BspOI GCTAGC 2 cut(s) 18, 153
BspPI GGATC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
BssNI GRCGYC 1 cut(s) 855
BssSI CACGAG 1 cut(s) 608
BssT1I CCWWGG 1 cut(s) 265
Bst2BI CACGAG 1 cut(s) 608
Bst4CI ACNGT 4 cut(s) 53, 284, 527, 721
BstACI GRCGYC 1 cut(s) 855
BstAPI GCANNNNNTGC 1 cut(s) 698
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 4 cut(s) 16, 151, 177, 748
BstDEI CTNAG 4 cut(s) 38, 684, 802, 827
BstF5I GGATG 4 cut(s) 150, 445, 750, 898
BstH2I RGCGCY 1 cut(s) 997
BstHHI GCGC 3 cut(s) 768, 996, 1014
BstKTI GATC 6 cut(s) 256, 421, 709, 940, 952, 1025
BstMAI GTCTC 2 cut(s) 41, 981
BstMBI GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 5 cut(s) 181, 190, 698, 747, 1026
BstNSI RCATGY 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 8 cut(s) 518, 685, 688, 802, 823, 824, 916, 1021
BtgZI GCGATG 2 cut(s) 333, 772
BtsCI GGATG 4 cut(s) 150, 445, 750, 898
BtsI GCAGTG 2 cut(s) 748, 954
BtsIMutI CAGTG 4 cut(s) 472, 532, 748, 954
Cac8I GCNNGC 4 cut(s) 16, 151, 177, 748
CaiI CAGNNNCTG 2 cut(s) 531, 698
CfoI GCGC 3 cut(s) 768, 996, 1014
Cfr13I GGNCC 1 cut(s) 640
CseI GACGC 1 cut(s) 863
Csp6I GTAC 3 cut(s) 49, 260, 665
CviAII CATG 5 cut(s) 155, 295, 303, 500, 590
CviQI GTAC 3 cut(s) 49, 260, 665
DdeI CTNAG 4 cut(s) 38, 684, 802, 827
DpnI GATC 6 cut(s) 255, 420, 708, 939, 951, 1024
DpnII GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
DriI GACNNNNNGTC 1 cut(s) 646
Eam1105I GACNNNNNGTC 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 265
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 640
Eco47III AGCGCT 1 cut(s) 995
Eco57I CTGAAG 4 cut(s) 170, 365, 383, 525
EcoRI GAATTC 1 cut(s) 323
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 5 cut(s) 158, 298, 306, 503, 593
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 651, 683
FaqI GGGAC 3 cut(s) 365, 466, 631
FatI CATG 5 cut(s) 154, 294, 302, 499, 589
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 9 cut(s) 532, 699, 702, 813, 816, 837, 930, 1010, 1030
FokI GGATG 4 cut(s) 157, 452, 737, 905
Fsp4HI GCNGC 9 cut(s) 532, 699, 702, 813, 816, 837, 930, 1010, 1030
FspBI CTAG 3 cut(s) 15, 150, 207
GlaI GCGC 3 cut(s) 767, 995, 1013
GluI GCNGC 9 cut(s) 532, 699, 702, 813, 816, 837, 930, 1010, 1030
GsaI CCCAGC 1 cut(s) 741
HaeII RGCGCY 1 cut(s) 997
HgaI GACGC 1 cut(s) 863
HhaI GCGC 3 cut(s) 768, 996, 1014
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 5 cut(s) 158, 298, 306, 503, 593
Hin6I GCGC 3 cut(s) 766, 994, 1012
HinP1I GCGC 3 cut(s) 766, 994, 1012
HinfI GANTC 3 cut(s) 87, 619, 680
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 345, 568, 679, 685
Hpy188III TCNNGA 3 cut(s) 188, 416, 890
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 605, 608, 661
HpyCH4III ACNGT 4 cut(s) 53, 284, 527, 721
HpyCH4IV ACGT 2 cut(s) 850, 985
HpyCH4V TGCA 8 cut(s) 175, 239, 377, 704, 818, 959, 1009, 1020
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 190, 698, 747, 1026
HpyF3I CTNAG 4 cut(s) 38, 684, 802, 827
HpySE526I ACGT 2 cut(s) 850, 985
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 5 cut(s) 158, 298, 306, 503, 593
HspAI GCGC 3 cut(s) 766, 994, 1012
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
LmnI GCTCC 2 cut(s) 190, 794
Lsp1109I GCAGC 8 cut(s) 518, 685, 688, 802, 823, 824, 916, 1021
LweI GCATC 4 cut(s) 685, 759, 772, 827
MaeI CTAG 3 cut(s) 15, 150, 207
MaeII ACGT 2 cut(s) 850, 985
MaeIII GTNAC 6 cut(s) 53, 157, 284, 408, 851, 986
MalI GATC 6 cut(s) 255, 420, 708, 939, 951, 1024
MboI GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
MboII GAAGA 2 cut(s) 376, 400
MfeI CAATTG 1 cut(s) 635
MluCI AATT 4 cut(s) 323, 625, 635, 874
MlyI GAGTC 2 cut(s) 96, 613
MnlI CCTC 8 cut(s) 126, 162, 378, 505, 604, 679, 682, 755
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 4 cut(s) 69, 245, 518, 882
MspA1I CMGCKG 2 cut(s) 815, 1032
MunI CAATTG 1 cut(s) 635
MwoI GCNNNNNNNGC 5 cut(s) 181, 190, 698, 747, 1026
NdeII GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
NheI GCTAGC 2 cut(s) 14, 149
NlaIII CATG 5 cut(s) 158, 298, 306, 503, 593
NlaIV GGNNCC 2 cut(s) 642, 796
NmuCI GTSAC 4 cut(s) 53, 408, 851, 986
NspI RCATGY 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 1 cut(s) 680
PkrI GCNGC 9 cut(s) 533, 700, 703, 814, 817, 838, 931, 1011, 1031
PleI GAGTC 2 cut(s) 95, 613
PpsI GAGTC 2 cut(s) 95, 613
PsiI TTATAA 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 737
PspN4I GGNNCC 2 cut(s) 642, 796
PspPI GGNCC 1 cut(s) 640
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 2 cut(s) 531, 698
PvuII CAGCTG 2 cut(s) 815, 1032
RsaI GTAC 3 cut(s) 50, 261, 666
RsaNI GTAC 3 cut(s) 49, 260, 665
SaqAI TTAA 4 cut(s) 69, 245, 518, 882
SatI GCNGC 9 cut(s) 532, 699, 702, 813, 816, 837, 930, 1010, 1030
Sau3AI GATC 6 cut(s) 253, 418, 706, 937, 949, 1022
Sau96I GGNCC 1 cut(s) 640
ScaI AGTACT 1 cut(s) 666
SchI GAGTC 2 cut(s) 96, 613
SfaNI GCATC 4 cut(s) 685, 759, 772, 827
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 640
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 4 cut(s) 323, 625, 635, 874
SsiI CCGC 1 cut(s) 754
SspI AATATT 1 cut(s) 561
SspMI CTAG 3 cut(s) 15, 150, 207
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 4 cut(s) 53, 284, 527, 721
TaiI ACGT 2 cut(s) 853, 988
TaqI TCGA 1 cut(s) 167
TaqII GACCGA 1 cut(s) 153
TasI AATT 4 cut(s) 323, 625, 635, 874
TatI WGTACW 3 cut(s) 48, 259, 664
TfiI GAWTC 1 cut(s) 680
Tru1I TTAA 4 cut(s) 69, 245, 518, 882
Tru9I TTAA 4 cut(s) 69, 245, 518, 882
TscAI CASTG 4 cut(s) 472, 532, 748, 961
TseFI GTSAC 4 cut(s) 53, 408, 851, 986
TseI GCWGC 9 cut(s) 531, 698, 701, 812, 815, 836, 929, 1009, 1029
Tsp45I GTSAC 4 cut(s) 53, 408, 851, 986
TspDTI ATGAA 8 cut(s) 93, 311, 336, 456, 486, 618, 620, 914
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 4 cut(s) 472, 532, 748, 961
VpaK11BI GGWCC 1 cut(s) 640
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 3 cut(s) 15, 150, 207
ZrmI AGTACT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.