Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

10578723 .. 10584819

Gene Structure 6097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2745 bp

ATGGGGAAGAGGAGCTCTCCGGTGGTCTTGTCATCGGACGACGAAGAGACCGATCGTTCTCTGAGCTCAAATCGTAGCCGTACAAGGTCGTCGTCGGCGTCGAGATTGATCTCTTCGGCTCCGGCGAAAAACCCCGGGCGAGCGAAGAAGGCTCGGGTTTCGGGTTCTCGCTCTAGCTTGGGCTCAGTGTCCACTAATTGGGATGAGGTCAGATTGTCCTTTGGAGATTTTGATGAAGTGTTCAGTGGTGGTTCCAAGGTAGCTGCTGGTTCTGGGAGGAGCAATGTGAAGGAGTTATGGGTTGAGAAATACAAACCCCATTCTCTTGAGGAGCTTGCTGTTCACAAGAAAAAGGTCCAAGAAGTTAAGGGGTGGTTTGAAGAACGATTGACAGATTCAAAGGGTAAATCTAGTAATCACGCTCTTGTCATCACTGGGCAAGCTGGAGTTGGAAAATCTGCAACTATTCATGTGATTGCATCTCAGCTTGCTGCTACATTGTGTGAATGGAACACGCCAACTCCAATAGTTTGGCAAGAACATTTATATAACTCTAGTACAGGAGTACAATACATGTCAAAGTTGGAGGAATTTGAAAATTTTGTGGAGAGAGTACGGAAGTACGGTTTGATTCCATCATCCCTTAGTGAGGGTTCAAAATCATCAATCATACTCTTAATTGACGACCTTCCAGTGACAAATGGTAAAGTTGCTTTTCAAAGACTTCAAAACTGTTTGCGCCTTCTTGTGCAATCAACTCGTACACCAACTGCTATTTTGATCACCGACCATGGTAAAGCTGATTCAGAAGATCACACTGCTGGATACTTGGATGAACTTCAGTTGTCTCTTCAAGGTGCCGGGGCTTGTAAGGTCTCCTTCAATCCTATAACATCTAATTCCATCAAAAAAGTACTGTCTAGAATATGTAAAGAAGAGCAGTGTAATGTGACTGCTGAACAGGTTGATCTAATTGCAAAAGCAAGTGGAGGTGACATAAGAAATGCAATTACATCTTTACAGTTCTTCTTTCTGAAACCAACTCCAATGCATTCGCTTCCTTCATCGATTACTCCTCCCAGGTATGCTAAAGGGAAATCAGATATGGTAAATGCTTTGGACAATAGTGGTTCCTTACAATTTGGAAGAGATGATACACTTTCTCTATTCCATGCCCTTGGGAAGTTTCTGCATAACAAAAGAGAAACTGAAGATAGCAGGGAATTGGATGGAGCTGCATTTCATGTGCAAGAAGGTTTGTCTAGACTACCACTGAAAATGGATGCTCCGGAAAAGATTCTCTGTCAAGCACACGGACAAGCCAGGCCTATTGCTGATTTTCTACATGAAAATGTTCTAGATTTCATGAGTGAGGAGGCAATGGATGATGCCTGGTCAGTTGCTTCATATTTAAGTGATGCTGATTTGCTTCTTGCTACTTTCCGCGGAATGCTAAGTAGACAGTATGAGGCAGAGAATGTTCTACAGTCAGCCGGTGCTTCAGTTGCCGTTCGTGGTGTGCTATTTGGAAATTTTCATCCATTGCCGTCCAGGTGGCATGCTGTTCGGCGGCCCAAGCTCTGGCAGGTTGAGAAGTCATCATTTTACAACAAGAAGGAGATGGTAAATCGGAGATTCGGTGCTTATAGTGTTACTTGTTCATCTGATTTGACGGTTATAGCTACCGAGTACTCGCCTGTGCATAAATGGCTTGGATTTAGGGCACAGGGAGGTCTTGAAGACAATGTTGAAAGGATGAGTTTGGGTGATCAAGAAAGTGAAATTGATGACGATATAGAAGAATGTTCAATCCTCAACGGAGAGTTGGGCTTTTTTTCAAAGATGGCAAGCCATGTTACTCGGTCGAGGGTGCAGCCACAGCTTCAGGAGCATCAATCAAGGGCTAGGTGGACAACACATCTTACTAAGATTCTTGCAAGCTTAATGGTTGATCAGGTACACCAAGGGAATAGAAAAAACAATTACTTTGGCAAGAAAGCATGGAAGTATATCTGCGATGAATTCTATAAGAGAACGGGTCTGAAATGGGACAAGGAACAACTGAAGAACCGATGTGCAGTTATGAAGCGGATGTATGTTATAATCAAGTCACTTCTTGATCGTAGTGATTTCAGTTGGGATGAAGCCACAGGGACCATCACAGCCAGTGATGAAGTATGGGCTGAATACACGAAGGAACATGCTGATGCAGAGACTTTAAGAAGCAGTGGCTGCCCAATTTACAAAGAGCTATGCATAATATTTTCAGAACCAGCAACCAATGGGAATCATGATCATCCAGCTGAACACGAGGAAGGGACTCCAAATTTTCATCAATTGGAGCCATTGTCCATCCCGCAAGAAGTACTGTCCTCATCGGAATCTGAGGAAGCAGATGATGCTGTAGATGATAAAGAAACAGTTCAACCTATTACTCCCAGTACTGCTGGCATCCGCAAAAGAGGGCGCAAGGGCATTGATGATGCCATTGCAGGAGCTATTTTAGAGATGGCAGCTGCATCAAAGCTGAGAATGGCTGCCATACAGCAACGTGATGCCAGATATACCATAGCTAATTGTATTAAAGCACTGGATGAGATGAAAGGCGTTGATGAGCAACTCTATTTTGCTGCTCTTGATCTGTTCAACAAGCCCATTGCAAGGGAGATGTTCTTGTCTCTCAAACACGACAAGCGCTTGATTTGGTTGCAGGGCAAGTGCAGAGCAGCTGGTCCTGTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

915

Amino Acids

101.72

Weight (kDa)

6.62

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	97 - 264	2e-24	Rad17 P-loop domain
Myb_DNA-bind_3	PF12776	636 - 730	2e-25	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2102
Acc36I	ACCTGC	1 cut(s)	1576
AccB1I	GGYRCC	1 cut(s)	857
AccB7I	CCANNNNNTGG	2 cut(s)	198, 1581
AccI	GTMKAC	1 cut(s)	1459
AccII	CGCG	1 cut(s)	1446
AccIII	TCCGGA	1 cut(s)	1288
AciI	CCGC	6 cut(s)	1444, 1446, 1570, 2089, 2357, 2455
AcsI	RAATTY	5 cut(s)	590, 598, 1531, 2021, 2326
AcuI	CTGAAG	5 cut(s)	824, 1230, 1485, 1868, 2084
AcyI	GRCGYC	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	2696
AfiI	CCNNNNNNNGG	4 cut(s)	198, 649, 1581, 2661
AflIII	ACRYGT	1 cut(s)	573
AjnI	CCWGG	4 cut(s)	1079, 1322, 1391, 1550
Alw21I	GWGCWC	2 cut(s)	17, 68
Alw26I	GTCTC	5 cut(s)	41, 852, 880, 2207, 2682
AlwNI	CAGNNNCTG	1 cut(s)	2232
Ama87I	CYCGRG	2 cut(s)	134, 153
Aor13HI	TCCGGA	1 cut(s)	1288
Aor51HI	AGCGCT	1 cut(s)	2696
AoxI	GGCC	2 cut(s)	1325, 1571
ApoI	RAATTY	5 cut(s)	590, 598, 1531, 2021, 2326
Asp700I	GAANNNNTTC	3 cut(s)	1296, 1353, 2421
AspLEI	GCGC	3 cut(s)	741, 2469, 2697
AspS9I	GGNCC	4 cut(s)	355, 1572, 2154, 2732
AsuC2I	CCSGG	3 cut(s)	135, 136, 862
AsuHPI	GGTGA	3 cut(s)	775, 1004, 1778
AvaI	CYCGRG	2 cut(s)	134, 153
AvaII	GGWCC	3 cut(s)	355, 2154, 2732
BaeGI	GKGCMC	1 cut(s)	1726
BanI	GGYRCC	1 cut(s)	857
BanII	GRGCYC	3 cut(s)	17, 68, 185
BarI	GAAGNNNNNNTAC	2 cut(s)	1138, 1170
BauI	CACGAG	1 cut(s)	2309
BbsI	GAAGAC	1 cut(s)	1746
Bbv12I	GWGCWC	2 cut(s)	17, 68
BccI	CCATC	8 cut(s)	643, 911, 1223, 1615, 1837, 2165, 2360, 2503
BceAI	ACGGC	3 cut(s)	63, 1493, 1531
BcgI	CGANNNNNNTGC	4 cut(s)	740, 774, 1547, 1581
BciT130I	CCWGG	4 cut(s)	1081, 1324, 1393, 1552
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	4 cut(s)	780, 1768, 1951, 2293
BcnI	CCSGG	3 cut(s)	135, 136, 862
BcoDI	GTCTC	5 cut(s)	41, 852, 880, 2207, 2682
BfaI	CTAG	8 cut(s)	174, 411, 555, 921, 1263, 1358, 1905, 2743
BfmI	CTRYAG	2 cut(s)	1484, 2403
BfoI	RGCGCY	1 cut(s)	2698
BfuAI	ACCTGC	1 cut(s)	1576
BfuI	GTATCC	1 cut(s)	818
BmcAI	AGTACT	4 cut(s)	915, 1691, 2367, 2443
Bme1390I	CCNGG	7 cut(s)	135, 136, 862, 1081, 1324, 1393, 1552
Bme18I	GGWCC	3 cut(s)	355, 2154, 2732
BmeT110I	CYCGRG	2 cut(s)	134, 153
BmgT120I	GGNCC	4 cut(s)	355, 1572, 2154, 2732
BmiI	GGNNCC	6 cut(s)	120, 253, 859, 1132, 2155, 2343
BmrFI	CCNGG	7 cut(s)	135, 136, 862, 1081, 1324, 1393, 1552
BmrI	ACTGGG	2 cut(s)	444, 2433
BmuI	ACTGGG	2 cut(s)	444, 2433
BpiI	GAAGAC	1 cut(s)	1746
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	135, 136, 862
Bsa29I	ATCGAT	1 cut(s)	1067
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	41, 880
BsaJI	CCNNGG	9 cut(s)	133, 134, 255, 790, 861, 1079, 1177, 1444, 1963
BsaWI	WCCGGW	2 cut(s)	19, 1288
BsaXI	ACNNNNNCTCC	6 cut(s)	505, 535, 1624, 1654, 2333, 2363
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 649, 1581, 2661
Bse118I	RCCGGY	1 cut(s)	1493
Bse1I	ACTGG	5 cut(s)	439, 692, 2166, 2439, 2595
Bse3DI	GCAATG	5 cut(s)	289, 1386, 1541, 2487, 2655
BseAI	TCCGGA	1 cut(s)	1288
BseBI	CCWGG	4 cut(s)	1081, 1324, 1393, 1552
BseCI	ATCGAT	1 cut(s)	1067
BseDI	CCNNGG	9 cut(s)	133, 134, 255, 790, 861, 1079, 1177, 1444, 1963
BseLI	CCNNNNNNNGG	4 cut(s)	198, 649, 1581, 2661
BseMI	GCAATG	5 cut(s)	289, 1386, 1541, 2487, 2655
BseMII	CTCAG	5 cut(s)	53, 198, 497, 2376, 2519
BseNI	ACTGG	5 cut(s)	439, 692, 2166, 2439, 2595
BseRI	GAGGAG	5 cut(s)	25, 292, 344, 1065, 1388
BseSI	GKGCMC	1 cut(s)	1726
BsgI	GTGCAG	3 cut(s)	1892, 2097, 2740
Bsh1236I	CGCG	1 cut(s)	1446
Bsh1285I	CGRYCG	2 cut(s)	55, 1865
BshFI	GGCC	2 cut(s)	1327, 1573
BshNI	GGYRCC	1 cut(s)	857
BshVI	ATCGAT	1 cut(s)	1067
BsiEI	CGRYCG	2 cut(s)	55, 1865
BsiHKAI	GWGCWC	2 cut(s)	17, 68
BsiHKCI	CYCGRG	2 cut(s)	134, 153
BsiSI	CCGG	6 cut(s)	20, 122, 135, 861, 1289, 1494
BslFI	GGGAC	3 cut(s)	2063, 2167, 2332
BslI	CCNNNNNNNGG	4 cut(s)	198, 649, 1581, 2661
BsmAI	GTCTC	5 cut(s)	41, 852, 880, 2207, 2682
BsmFI	GGGAC	3 cut(s)	2063, 2167, 2332
BsmI	GAATGC	2 cut(s)	1051, 1455
BsnI	GGCC	2 cut(s)	1327, 1573
Bso31I	GGTCTC	2 cut(s)	41, 880
BsoBI	CYCGRG	2 cut(s)	134, 153
Bsp1286I	GDGCHC	4 cut(s)	17, 68, 185, 1726
Bsp13I	TCCGGA	1 cut(s)	1288
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	6 cut(s)	1444, 1446, 1570, 2089, 2357, 2455
BspANI	GGCC	2 cut(s)	1327, 1573
BspCNI	CTCAG	5 cut(s)	54, 197, 496, 2377, 2520
BspDI	ATCGAT	1 cut(s)	1067
BspEI	TCCGGA	1 cut(s)	1288
BspFNI	CGCG	1 cut(s)	1446
BspHI	TCATGA	2 cut(s)	1365, 2290
BspLI	GGNNCC	6 cut(s)	120, 253, 859, 1132, 2155, 2343
BspMI	ACCTGC	1 cut(s)	1576
BspQI	GCTCTTC	1 cut(s)	930
BspT107I	GGYRCC	1 cut(s)	857
BspTNI	GGTCTC	2 cut(s)	41, 880
BsrDI	GCAATG	5 cut(s)	289, 1386, 1541, 2487, 2655
BsrFI	RCCGGY	1 cut(s)	1493
BsrI	ACTGG	5 cut(s)	439, 692, 2166, 2439, 2595
BssAI	RCCGGY	1 cut(s)	1493
BssECI	CCNNGG	9 cut(s)	133, 134, 255, 790, 861, 1079, 1177, 1444, 1963
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	2309
BssT1I	CCWWGG	4 cut(s)	255, 790, 1177, 1963
Bst2BI	CACGAG	1 cut(s)	2309
Bst2UI	CCWGG	4 cut(s)	1081, 1324, 1393, 1552
Bst4CI	ACNGT	9 cut(s)	626, 734, 918, 1023, 1464, 1488, 1675, 2370, 2422
Bst6I	CTCTTC	6 cut(s)	2, 39, 118, 855, 930, 1141
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	2 cut(s)	2232, 2399
BstC8I	GCNNGC	8 cut(s)	141, 336, 441, 489, 1560, 1849, 1939, 2449
BstDEI	CTNAG	8 cut(s)	62, 184, 483, 644, 1454, 1926, 2385, 2528
BstDSI	CCRYGG	2 cut(s)	790, 1444
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	1446
BstH2I	RGCGCY	1 cut(s)	2698
BstHHI	GCGC	3 cut(s)	741, 2469, 2697
BstMAI	GTCTC	5 cut(s)	41, 852, 880, 2207, 2682
BstMCI	CGRYCG	2 cut(s)	55, 1865
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 1505, 1576, 1708, 1879, 1888, 2232, 2399
BstNI	CCWGG	4 cut(s)	1081, 1324, 1393, 1552
BstNSI	RCATGY	3 cut(s)	577, 1562, 2204
BstSCI	CCNGG	7 cut(s)	133, 134, 860, 1079, 1322, 1391, 1550
BstSFI	CTRYAG	2 cut(s)	1484, 2403
BstSLI	GKGCMC	1 cut(s)	1726
BstUI	CGCG	1 cut(s)	1446
BstV2I	GAAGAC	1 cut(s)	1746
BstXI	CCANNNNNNTGG	2 cut(s)	531, 1178
Bsu15I	ATCGAT	1 cut(s)	1067
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	2 cut(s)	1327, 1573
BsuTUI	ATCGAT	1 cut(s)	1067
BtgI	CCRYGG	2 cut(s)	790, 1444
BtgZI	GCGATG	1 cut(s)	2031
BtsI	GCAGTG	3 cut(s)	816, 947, 2233
BveI	ACCTGC	1 cut(s)	1576
Cac8I	GCNNGC	8 cut(s)	141, 336, 441, 489, 1560, 1849, 1939, 2449
CaiI	CAGNNNCTG	1 cut(s)	2232
CciI	TCATGA	2 cut(s)	1365, 2290
CfoI	GCGC	3 cut(s)	741, 2469, 2697
Cfr10I	RCCGGY	1 cut(s)	1493
Cfr13I	GGNCC	4 cut(s)	355, 1572, 2154, 2732
Cfr42I	CCGCGG	1 cut(s)	1447
Cfr9I	CCCGGG	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	1067
CseI	GACGC	1 cut(s)	87
DdeI	CTNAG	8 cut(s)	62, 184, 483, 644, 1454, 1926, 2385, 2528
Eam1104I	CTCTTC	6 cut(s)	2, 39, 118, 855, 930, 1141
EarI	CTCTTC	6 cut(s)	2, 39, 118, 855, 930, 1141
Ecl136II	GAGCTC	2 cut(s)	15, 66
Eco130I	CCWWGG	4 cut(s)	255, 790, 1177, 1963
Eco147I	AGGCCT	1 cut(s)	1327
Eco24I	GRGCYC	3 cut(s)	17, 68, 185
Eco31I	GGTCTC	2 cut(s)	41, 880
Eco47I	GGWCC	3 cut(s)	355, 2154, 2732
Eco47III	AGCGCT	1 cut(s)	2696
Eco53kI	GAGCTC	2 cut(s)	15, 66
Eco57I	CTGAAG	5 cut(s)	824, 1230, 1485, 1868, 2084
Eco88I	CYCGRG	2 cut(s)	134, 153
EcoICRI	GAGCTC	2 cut(s)	15, 66
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	2021
EcoRII	CCWGG	4 cut(s)	1079, 1322, 1391, 1550
EcoT14I	CCWWGG	4 cut(s)	255, 790, 1177, 1963
EcoT22I	ATGCAT	2 cut(s)	1053, 2258
EcoT38I	GRGCYC	3 cut(s)	17, 68, 185
ErhI	CCWWGG	4 cut(s)	255, 790, 1177, 1963
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FaqI	GGGAC	3 cut(s)	2063, 2167, 2332
FauI	CCCGC	1 cut(s)	2364
FbaI	TGATCA	4 cut(s)	780, 1768, 1951, 2293
FblI	GTMKAC	1 cut(s)	1459
FriOI	GRGCYC	3 cut(s)	17, 68, 185
FspBI	CTAG	8 cut(s)	174, 411, 555, 921, 1263, 1358, 1905, 2743
GlaI	GCGC	3 cut(s)	740, 2468, 2696
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	2698
HaeIII	GGCC	2 cut(s)	1327, 1573
HapII	CCGG	6 cut(s)	20, 122, 135, 861, 1289, 1494
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	3 cut(s)	741, 2469, 2697
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	3 cut(s)	739, 2467, 2695
HinP1I	GCGC	3 cut(s)	739, 2467, 2695
HindIII	AAGCTT	1 cut(s)	1939
HinfI	GANTC	9 cut(s)	395, 631, 803, 1297, 1635, 1930, 2287, 2320, 2381
HpaII	CCGG	6 cut(s)	20, 122, 135, 861, 1289, 1494
HphI	GGTGA	3 cut(s)	775, 1004, 1778
Hpy166II	GTNNAC	6 cut(s)	192, 343, 764, 1460, 1911, 1960
Hpy8I	GTNNAC	6 cut(s)	192, 343, 764, 1460, 1911, 1960
Hpy99I	CGWCG	4 cut(s)	44, 94, 97, 103
HpyCH4III	ACNGT	9 cut(s)	626, 734, 918, 1023, 1464, 1488, 1675, 2370, 2422
HpyCH4IV	ACGT	1 cut(s)	2551
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 1505, 1576, 1708, 1879, 1888, 2232, 2399
HpyF3I	CTNAG	8 cut(s)	62, 184, 483, 644, 1454, 1926, 2385, 2528
HpySE526I	ACGT	1 cut(s)	2551
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	3 cut(s)	739, 2467, 2695
Kpn2I	TCCGGA	1 cut(s)	1288
Ksp22I	TGATCA	4 cut(s)	780, 1768, 1951, 2293
KspI	CCGCGG	1 cut(s)	1447
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	9 cut(s)	12, 124, 279, 331, 1232, 1291, 1888, 2341, 2495
MaeI	CTAG	8 cut(s)	174, 411, 555, 921, 1263, 1358, 1905, 2743
MaeII	ACGT	1 cut(s)	2551
MaeIII	GTNAC	6 cut(s)	694, 949, 992, 1651, 1855, 2109
MfeI	CAATTG	1 cut(s)	2336
MhlI	GDGCHC	4 cut(s)	17, 68, 185, 1726
MlyI	GAGTC	1 cut(s)	2314
MmeI	TCCRAC	2 cut(s)	430, 564
Mph1103I	ATGCAT	2 cut(s)	1053, 2258
MroI	TCCGGA	1 cut(s)	1288
MroXI	GAANNNNTTC	3 cut(s)	1296, 1353, 2421
MseI	TTAA	6 cut(s)	366, 677, 1412, 1943, 2219, 2583
MslI	CAYNNNNRTG	2 cut(s)	1350, 2205
MspA1I	CMGCKG	4 cut(s)	1446, 2303, 2516, 2729
MspI	CCGG	6 cut(s)	20, 122, 135, 861, 1289, 1494
MspR9I	CCNGG	7 cut(s)	135, 136, 862, 1081, 1324, 1393, 1552
MunI	CAATTG	1 cut(s)	2336
Mva1269I	GAATGC	2 cut(s)	1051, 1455
MvaI	CCWGG	4 cut(s)	1081, 1324, 1393, 1552
MvnI	CGCG	1 cut(s)	1446
MwoI	GCNNNNNNNGC	8 cut(s)	149, 1505, 1576, 1708, 1879, 1888, 2232, 2399
NciI	CCSGG	3 cut(s)	135, 136, 862
NcoI	CCATGG	1 cut(s)	790
NlaIV	GGNNCC	6 cut(s)	120, 253, 859, 1132, 2155, 2343
NmuCI	GTSAC	4 cut(s)	694, 949, 992, 2109
NsiI	ATGCAT	2 cut(s)	1053, 2258
NspI	RCATGY	3 cut(s)	577, 1562, 2204
PaeI	GCATGC	1 cut(s)	1562
PagI	TCATGA	2 cut(s)	1365, 2290
PceI	AGGCCT	1 cut(s)	1327
PciI	ACATGT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 95, 98, 122
PctI	GAATGC	2 cut(s)	1051, 1455
PdmI	GAANNNNTTC	3 cut(s)	1296, 1353, 2421
PfeI	GAWTC	8 cut(s)	395, 631, 803, 1297, 1635, 1930, 2287, 2381
PflMI	CCANNNNNTGG	2 cut(s)	198, 1581
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	2314
PpsI	GAGTC	1 cut(s)	2314
PscI	ACATGT	1 cut(s)	573
PsiI	TTATAA	1 cut(s)	2102
Psp124BI	GAGCTC	2 cut(s)	17, 68
Psp6I	CCWGG	4 cut(s)	1079, 1322, 1391, 1550
PspGI	CCWGG	4 cut(s)	1079, 1322, 1391, 1550
PspN4I	GGNNCC	6 cut(s)	120, 253, 859, 1132, 2155, 2343
PspPI	GGNCC	4 cut(s)	355, 1572, 2154, 2732
PstNI	CAGNNNCTG	1 cut(s)	2232
PvuI	CGATCG	1 cut(s)	55
PvuII	CAGCTG	3 cut(s)	2303, 2516, 2729
RseI	CAYNNNNRTG	2 cut(s)	1350, 2205
SacI	GAGCTC	2 cut(s)	17, 68
SacII	CCGCGG	1 cut(s)	1447
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	6 cut(s)	366, 677, 1412, 1943, 2219, 2583
Sau96I	GGNCC	4 cut(s)	355, 1572, 2154, 2732
ScaI	AGTACT	4 cut(s)	915, 1691, 2367, 2443
SchI	GAGTC	1 cut(s)	2314
ScrFI	CCNGG	7 cut(s)	135, 136, 862, 1081, 1324, 1393, 1552
SduI	GDGCHC	4 cut(s)	17, 68, 185, 1726
SfcI	CTRYAG	2 cut(s)	1484, 2403
Sfr303I	CCGCGG	1 cut(s)	1447
SgrBI	CCGCGG	1 cut(s)	1447
SinI	GGWCC	3 cut(s)	355, 2154, 2732
SmaI	CCCGGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	1350, 2205
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SphI	GCATGC	1 cut(s)	1562
SseBI	AGGCCT	1 cut(s)	1327
SsiI	CCGC	6 cut(s)	1444, 1446, 1570, 2089, 2357, 2455
SspI	AATATT	1 cut(s)	2262
SspMI	CTAG	8 cut(s)	174, 411, 555, 921, 1263, 1358, 1905, 2743
SstI	GAGCTC	2 cut(s)	17, 68
StuI	AGGCCT	1 cut(s)	1327
StyD4I	CCNGG	7 cut(s)	133, 134, 860, 1079, 1322, 1391, 1550
StyI	CCWWGG	4 cut(s)	255, 790, 1177, 1963
TaaI	ACNGT	9 cut(s)	626, 734, 918, 1023, 1464, 1488, 1675, 2370, 2422
TaiI	ACGT	1 cut(s)	2554
TaqI	TCGA	3 cut(s)	101, 1067, 1865
TaqII	GACCGA	2 cut(s)	65, 1851
TatI	WGTACW	6 cut(s)	557, 565, 913, 1689, 2365, 2441
TauI	GCSGC	1 cut(s)	1573
TfiI	GAWTC	8 cut(s)	395, 631, 803, 1297, 1635, 1930, 2287, 2381
Tru1I	TTAA	6 cut(s)	366, 677, 1412, 1943, 2219, 2583
Tru9I	TTAA	6 cut(s)	366, 677, 1412, 1943, 2219, 2583
TseFI	GTSAC	4 cut(s)	694, 949, 992, 2109
Tsp45I	GTSAC	4 cut(s)	694, 949, 992, 2109
TspGWI	ACGGA	3 cut(s)	631, 1329, 1833
TspMI	CCCGGG	1 cut(s)	134
Van91I	CCANNNNNTGG	2 cut(s)	198, 1581
VpaK11BI	GGWCC	3 cut(s)	355, 2154, 2732
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	5 cut(s)	590, 598, 1531, 2021, 2326
XbaI	TCTAGA	3 cut(s)	920, 1262, 1357
XceI	RCATGY	3 cut(s)	577, 1562, 2204
XmaI	CCCGGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	1459
XmnI	GAANNNNTTC	3 cut(s)	1296, 1353, 2421
XspI	CTAG	8 cut(s)	174, 411, 555, 921, 1263, 1358, 1905, 2743
ZrmI	AGTACT	4 cut(s)	915, 1691, 2367, 2443
Zsp2I	ATGCAT	2 cut(s)	1053, 2258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.