Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Reverse (-)

6012487 .. 6013444

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0076000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCTCGCTGGCTCTGCTCATTATGGAAAAATTTGTATAGGTAATACAAAGAGGAGGGTGCAGAGAGCGCGAGCTGCGTCAACGATTGCGAACGCCAGAATGGAGGGTACTTTCATAAATTGGTGTAAGAAGCTGGGGATGAGTGGTGGTTTGGCGGTGGTGGTGTTGTCAGCTTCGCATGCTTTGGGCTTTTGTTTGAGCCAGTTGTCGGGCATGCTGATGAGAGTGTCGCTCACAGCATCGTTTTGGTTCGGGGTGAGACTCTGCGGGAATAGAGTGGTGTCGATGTGTGAAAATCTAAGAAGGGTGGAGGAGATATCGGGAATGCCGGTGAAGCTGATCCTGGCCGTTGATGCGAAGCTCGAACGGGAACTCAGAGTGAGGAGAACACGACCTAAATTAGAAGAGGGGCTGGCGGACTATTATGATCAAACCTCAGATTCCATCAAATTTACTATTTCAATCGCCCCAAAACCGTGCGTGAATCTGACCGCGGTCCATAGTAGAATTTTCGCAAATAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

175

Amino Acids

19.25

Weight (kDa)

10.1

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	70, 494
AciI	CCGC	5 cut(s)	155, 267, 416, 492, 494
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	30, 449, 507
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	462
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	5 cut(s)	74, 133, 173, 337, 361
AluI	AGCT	5 cut(s)	74, 133, 173, 337, 361
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	3 cut(s)	30, 449, 507
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	268, 343
AvaII	GGWCC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	248, 343
BoxI	GACNNNNGTC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	388, 450
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	3 cut(s)	67, 326, 397
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	70, 494
BshFI	GGCC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	339, 427
BspACI	CCGC	5 cut(s)	155, 267, 416, 492, 494
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	387, 449
BspFNI	CGCG	2 cut(s)	70, 494
BspPI	GGATC	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	339, 427
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	6 cut(s)	6, 10, 72, 180, 215, 414
BstDEI	CTNAG	3 cut(s)	299, 374, 436
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	2 cut(s)	70, 494
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	342, 430
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	339, 427
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 67, 74, 179, 334, 353, 521
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	2 cut(s)	182, 217
BstPAI	GACNNNNGTC	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	2 cut(s)	70, 494
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	144
Cac8I	GCNNGC	6 cut(s)	6, 10, 72, 180, 215, 414
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	496
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	179, 214
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	299, 374, 436
DpnI	GATC	2 cut(s)	341, 429
DpnII	GATC	2 cut(s)	339, 427
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	342
EcoRV	GATATC	1 cut(s)	318
FaeI	CATG	2 cut(s)	182, 217
FaiI	YATR	8 cut(s)	24, 38, 116, 180, 215, 426, 501, 526
FatI	CATG	2 cut(s)	178, 213
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	182, 217
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	261, 440, 484
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	2 cut(s)	268, 343
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	377, 439, 489
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 67, 74, 179, 334, 353, 521
HpyF3I	CTNAG	3 cut(s)	299, 374, 436
Hsp92II	CATG	2 cut(s)	182, 217
HspAI	GCGC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	427
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	339, 427
LpnPI	CCDG	7 cut(s)	109, 119, 215, 329, 342, 356, 398
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	248, 343
MalI	GATC	2 cut(s)	341, 429
MboI	GATC	2 cut(s)	339, 427
MboII	GAAGA	1 cut(s)	416
MluCI	AATT	5 cut(s)	30, 118, 398, 449, 507
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	7 cut(s)	45, 48, 97, 304, 375, 400, 445
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	70, 494
MwoI	GCNNNNNNNGC	7 cut(s)	14, 67, 74, 179, 334, 353, 521
NdeII	GATC	2 cut(s)	339, 427
NlaIII	CATG	2 cut(s)	182, 217
NspI	RCATGY	2 cut(s)	182, 217
PaeI	GCATGC	2 cut(s)	182, 217
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	440, 484
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	496
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	218
SacII	CCGCGG	1 cut(s)	495
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	339, 427
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	8 cut(s)	43, 76, 135, 175, 339, 363, 397, 437
SfaNI	GCATC	2 cut(s)	248, 343
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	218
SphI	GCATGC	2 cut(s)	182, 217
Sse9I	AATT	5 cut(s)	30, 118, 398, 449, 507
SsiI	CCGC	5 cut(s)	155, 267, 416, 492, 494
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	284, 363
TasI	AATT	5 cut(s)	30, 118, 398, 449, 507
TfiI	GAWTC	2 cut(s)	440, 484
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	3 cut(s)	30, 449, 507
XceI	RCATGY	2 cut(s)	182, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.