Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025811.1

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 537

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

aaccagcaaccaatgggaatgatgatcatccagctgaacacgaggaagggactccaaattttcatcaattggagccattgtccatcccgcaagaagtactgtcctcatcggaatctgaggaagcagatgatggtgtagatgataaagaaacaattcaacctattactcccagcactgctggcatccgcaaaagagggcgcaaaggcattgatgatgccattgcaggagctattttagagatggcagctgcatcaaagctgagaacagctgctatacagcaacgtgatgccagatataccatagctaattgtattaaagcactggatgagatgaaaggcgttgatgagcaactctattttgctgctcttgatctgttcaacaagcccactgcaagggagatgttcttgtctctcaaacacgacaagcgcttgatttggttgcagggcaagtgcagagcagctggtcctgttccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

157

Amino Acids

17.18

Weight (kDa)

5.1

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 186
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	157, 378
AluBI	AGCT	7 cut(s)	34, 229, 247, 258, 268, 304, 460
AluI	AGCT	7 cut(s)	34, 229, 247, 258, 268, 304, 460
Alw26I	GTCTC	1 cut(s)	413
Aor51HI	AGCGCT	1 cut(s)	427
ApeKI	GCWGC	5 cut(s)	244, 247, 268, 361, 457
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	200, 428
AspS9I	GGNCC	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	40
BbvI	GCAGC	5 cut(s)	234, 255, 256, 348, 469
BccI	CCATC	3 cut(s)	91, 124, 234
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	5 cut(s)	245, 248, 269, 362, 458
BlsI	GCNGC	5 cut(s)	246, 249, 270, 363, 459
BmcAI	AGTACT	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	4 cut(s)	191, 204, 259, 276
BsaBI	GATNNNNATC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	26
BseGI	GGATG	4 cut(s)	27, 83, 182, 330
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	107, 250
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	5 cut(s)	234, 255, 256, 348, 469
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	24, 369
BspACI	CCGC	2 cut(s)	88, 186
BspCNI	CTCAG	2 cut(s)	108, 251
BspLI	GGNNCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	24, 369
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	116, 259
BstF5I	GGATG	4 cut(s)	27, 83, 182, 330
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	2 cut(s)	200, 428
BstKTI	GATC	2 cut(s)	27, 372
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	24, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstV1I	GCAGC	5 cut(s)	234, 255, 256, 348, 469
BtsCI	GGATG	4 cut(s)	27, 83, 182, 330
BtsI	GCAGTG	2 cut(s)	173, 386
BtsIMutI	CAGTG	3 cut(s)	173, 319, 386
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	200, 428
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	9 cut(s)	34, 75, 229, 247, 258, 268, 304, 384, 460
CviKI_1	RGCY	9 cut(s)	34, 75, 229, 247, 258, 268, 304, 384, 460
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	116, 259
DpnI	GATC	2 cut(s)	26, 371
DpnII	GATC	2 cut(s)	24, 369
Eco47I	GGWCC	1 cut(s)	463
Eco47III	AGCGCT	1 cut(s)	427
FaiI	YATR	3 cut(s)	274, 296, 301
FaqI	GGGAC	1 cut(s)	63
FauI	CCCGC	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	245, 248, 269, 362, 458
FokI	GGATG	4 cut(s)	14, 70, 169, 337
Fsp4HI	GCNGC	5 cut(s)	245, 248, 269, 362, 458
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	2 cut(s)	199, 427
GluI	GCNGC	5 cut(s)	245, 248, 269, 362, 458
GsaI	CCCAGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	429
HhaI	GCGC	2 cut(s)	200, 428
Hin6I	GCGC	2 cut(s)	198, 426
HinP1I	GCGC	2 cut(s)	198, 426
HinfI	GANTC	2 cut(s)	51, 112
Hpy188I	TCNGA	2 cut(s)	111, 117
Hpy188III	TCNNGA	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	5 cut(s)	223, 250, 391, 441, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	116, 259
HpySE526I	ACGT	1 cut(s)	282
HspAI	GCGC	2 cut(s)	198, 426
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	24, 369
LmnI	GCTCC	2 cut(s)	72, 226
LpnPI	CCDG	9 cut(s)	17, 44, 164, 183, 209, 303, 307, 427, 446
Lsp1109I	GCAGC	5 cut(s)	234, 255, 256, 348, 469
LweI	GCATC	4 cut(s)	191, 204, 259, 276
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	282
MalI	GATC	2 cut(s)	26, 371
MboI	GATC	2 cut(s)	24, 369
MfeI	CAATTG	1 cut(s)	67
MluCI	AATT	4 cut(s)	57, 67, 152, 306
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	36, 111, 114, 187
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	314
MspA1I	CMGCKG	4 cut(s)	34, 247, 268, 460
MunI	CAATTG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	24, 369
NlaIV	GGNNCC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	246, 249, 270, 363, 459
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	463
PvuII	CAGCTG	4 cut(s)	34, 247, 268, 460
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	5 cut(s)	245, 248, 269, 362, 458
Sau3AI	GATC	2 cut(s)	24, 369
Sau96I	GGNCC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	1 cut(s)	45
SetI	ASST	9 cut(s)	36, 162, 231, 249, 260, 270, 285, 306, 462
SfaNI	GCATC	4 cut(s)	191, 204, 259, 276
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	4 cut(s)	57, 67, 152, 306
SsiI	CCGC	2 cut(s)	88, 186
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	285
TasI	AATT	4 cut(s)	57, 67, 152, 306
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	3 cut(s)	180, 326, 393
TseI	GCWGC	5 cut(s)	244, 247, 268, 361, 457
TspDTI	ATGAA	2 cut(s)	52, 346
TspRI	CASTG	3 cut(s)	180, 326, 393
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.