Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Reverse (-)

17290417 .. 17292855

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G171400.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGGCAAACCGTCCTACTCGGACACGGGGACTAACGCTTCAACATCAGCAGCAACAGTCAAGGGCTAGGTGGACAACACATCTTACTGAAATACTTGTAAACTTAATGGTGGATCAAGTACACAAAGGGAACAGAAAAAATCATAATTTTGGCAAGAAAGCATGGAAGTATATGTGTGATGAGTTCCATAAGAGAACAGGTCTGAAATGGGACAAGGAACAACTGAAGAACCGAGGCGCAGTTTTGAGGAGGATCTATGTTACAGTTACTTCACTTCTTGATCGAAGTGACTTCAGTTGGGATGAATCCACAGGGGCTATTGTAGCCAGTGATGAAGTGTGGGCTGAATATGTCAAGCAGGAACATCCTGATTCCGAGACTTTAAAAGTCAGTGGCTGCCCAATTTATAAAGAGCTGTGCACTATATTTTCAGAACCACCAACAAACGGGAAACATGACCATCCAGCTGAACATGAGGGTGGGGATCCAAATTCTCGTCCACCGGAGCAAGAAGTGTCCTCATCAGATTCTGAGGAAGCAAATGACGCCATCAATGATCAAGAAACAATTCAACCTAGTACACCTAGCACTACTGGCATCCGTAAAAGAGGGCGCAAGGGTATTGATGATGCTATTGCAGGAGCTATATTGGAGATGGCAGCTGCATCAAAGCTAAGGACAGCTGCTACACAGCAACATAATGCTAGATACACCATAGCTAATTGTATTGCAGAATTGGATAAGATGCAAGGTGTTGATGAGCAAGTCTATTTTGCTGCGCTTGATCTGTTCAACAAACCTATTGCAAGGGAGGTGTTCTTGTCTCTCAAAGGTGAAAAACGCTTGATTTGGTTGCTTAGGAAGTGCACATCAGACCCCGTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

297

Amino Acids

33.54

Weight (kDa)

7.18

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AclWI	GGATC	4 cut(s)	123, 263, 482, 495
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	2 cut(s)	248, 280
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	2 cut(s)	123, 583
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	3 cut(s)	44, 575, 796
AluBI	AGCT	7 cut(s)	418, 470, 647, 665, 676, 686, 722
AluI	AGCT	7 cut(s)	418, 470, 647, 665, 676, 686, 722
Alw21I	GWGCWC	2 cut(s)	425, 872
Alw26I	GTCTC	2 cut(s)	374, 831
Alw44I	GTGCAC	2 cut(s)	421, 868
AlwI	GGATC	4 cut(s)	123, 263, 482, 495
AlwNI	CAGNNNCTG	2 cut(s)	399, 533
ApaLI	GTGCAC	2 cut(s)	421, 868
ApeKI	GCWGC	6 cut(s)	52, 399, 662, 665, 686, 779
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	3 cut(s)	242, 618, 784
AsuHPI	GGTGA	1 cut(s)	848
BaeGI	GKGCMC	2 cut(s)	425, 872
BamHI	GGATCC	1 cut(s)	487
Bbv12I	GWGCWC	2 cut(s)	425, 872
BbvI	GCAGC	6 cut(s)	64, 386, 652, 673, 674, 766
BccI	CCATC	3 cut(s)	471, 560, 652
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	374, 831
BfaI	CTAG	5 cut(s)	69, 579, 588, 708, 889
BisI	GCNGC	6 cut(s)	53, 400, 663, 666, 687, 780
BlsI	GCNGC	6 cut(s)	54, 401, 664, 667, 688, 781
BmiI	GGNNCC	1 cut(s)	489
BmsI	GCATC	4 cut(s)	609, 622, 677, 738
Bpu10I	CCTNAGC	2 cut(s)	677, 860
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	330, 601
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	4 cut(s)	310, 367, 463, 600
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	330, 601
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	2 cut(s)	425, 872
BseXI	GCAGC	6 cut(s)	64, 386, 652, 673, 674, 766
BsiHKAI	GWGCWC	2 cut(s)	425, 872
BsiSI	CCGG	1 cut(s)	506
BslFI	GGGAC	2 cut(s)	45, 227
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	374, 831
BsmFI	GGGAC	2 cut(s)	45, 227
Bsp1286I	GDGCHC	2 cut(s)	425, 872
Bsp143I	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	4 cut(s)	123, 263, 482, 495
BsrI	ACTGG	2 cut(s)	330, 601
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
BssNI	GRCGYC	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	14, 60, 268
BstACI	GRCGYC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	534, 677, 860
BstF5I	GGATG	4 cut(s)	310, 367, 463, 600
BstHHI	GCGC	3 cut(s)	242, 618, 784
BstKTI	GATC	6 cut(s)	118, 258, 286, 490, 562, 790
BstMAI	GTCTC	2 cut(s)	374, 831
BstMBI	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 548, 597
BstSLI	GKGCMC	2 cut(s)	425, 872
BstV1I	GCAGC	6 cut(s)	64, 386, 652, 673, 674, 766
BstX2I	RGATCY	2 cut(s)	255, 487
BstYI	RGATCY	2 cut(s)	255, 487
BtsCI	GGATG	4 cut(s)	310, 367, 463, 600
BtsIMutI	CAGTG	2 cut(s)	337, 400
CaiI	CAGNNNCTG	2 cut(s)	399, 533
CfoI	GCGC	3 cut(s)	242, 618, 784
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	122, 582
CviAII	CATG	3 cut(s)	165, 458, 476
CviQI	GTAC	2 cut(s)	122, 582
DdeI	CTNAG	3 cut(s)	534, 677, 860
DpnI	GATC	6 cut(s)	117, 257, 285, 489, 561, 789
DpnII	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
DraI	TTTAAA	1 cut(s)	387
Eco57I	CTGAAG	2 cut(s)	248, 280
FaeI	CATG	3 cut(s)	168, 461, 479
FaqI	GGGAC	2 cut(s)	45, 227
FatI	CATG	3 cut(s)	164, 457, 475
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	6 cut(s)	53, 400, 663, 666, 687, 780
FokI	GGATG	4 cut(s)	317, 354, 450, 587
Fsp4HI	GCNGC	6 cut(s)	53, 400, 663, 666, 687, 780
FspBI	CTAG	5 cut(s)	69, 579, 588, 708, 889
GlaI	GCGC	3 cut(s)	241, 617, 783
GluI	GCNGC	6 cut(s)	53, 400, 663, 666, 687, 780
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	3 cut(s)	242, 618, 784
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	3 cut(s)	168, 461, 479
Hin6I	GCGC	3 cut(s)	240, 616, 782
HinP1I	GCGC	3 cut(s)	240, 616, 782
HinfI	GANTC	3 cut(s)	308, 374, 530
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	8 cut(s)	75, 103, 124, 423, 503, 584, 870, 886
Hpy188I	TCNGA	7 cut(s)	24, 207, 379, 436, 529, 535, 877
Hpy188III	TCNNGA	3 cut(s)	281, 371, 563
Hpy8I	GTNNAC	8 cut(s)	75, 103, 124, 423, 503, 584, 870, 886
HpyCH4III	ACNGT	3 cut(s)	14, 60, 268
HpyCH4V	TGCA	7 cut(s)	423, 641, 668, 734, 751, 809, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 548, 597
HpyF3I	CTNAG	3 cut(s)	534, 677, 860
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	3 cut(s)	168, 461, 479
HspAI	GCGC	3 cut(s)	240, 616, 782
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
LmnI	GCTCC	2 cut(s)	508, 644
LpnPI	CCDG	9 cut(s)	186, 300, 343, 347, 384, 480, 519, 582, 627
Lsp1109I	GCAGC	6 cut(s)	64, 386, 652, 673, 674, 766
LweI	GCATC	4 cut(s)	609, 622, 677, 738
MaeI	CTAG	5 cut(s)	69, 579, 588, 708, 889
MaeIII	GTNAC	3 cut(s)	262, 268, 290
MalI	GATC	6 cut(s)	117, 257, 285, 489, 561, 789
MboI	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	2 cut(s)	255, 487
MhlI	GDGCHC	2 cut(s)	425, 872
MluCI	AATT	6 cut(s)	148, 405, 493, 570, 724, 737
MnlI	CCTC	8 cut(s)	230, 243, 246, 472, 529, 532, 605, 808
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	2 cut(s)	107, 386
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	3 cut(s)	470, 665, 686
MspI	CCGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	326, 548, 597
NdeII	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
NlaIII	CATG	3 cut(s)	168, 461, 479
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	308, 374, 530
PkrI	GCNGC	6 cut(s)	54, 401, 664, 667, 688, 781
PsiI	TTATAA	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	489
PstNI	CAGNNNCTG	2 cut(s)	399, 533
PsuI	RGATCY	2 cut(s)	255, 487
PvuII	CAGCTG	3 cut(s)	470, 665, 686
RsaI	GTAC	2 cut(s)	123, 583
RsaNI	GTAC	2 cut(s)	122, 582
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	107, 386
SatI	GCNGC	6 cut(s)	53, 400, 663, 666, 687, 780
Sau3AI	GATC	6 cut(s)	115, 255, 283, 487, 559, 787
SduI	GDGCHC	2 cut(s)	425, 872
SfaNI	GCATC	4 cut(s)	609, 622, 677, 738
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	6 cut(s)	148, 405, 493, 570, 724, 737
SspMI	CTAG	5 cut(s)	69, 579, 588, 708, 889
TaaI	ACNGT	3 cut(s)	14, 60, 268
TaqI	TCGA	1 cut(s)	286
TasI	AATT	6 cut(s)	148, 405, 493, 570, 724, 737
TatI	WGTACW	2 cut(s)	121, 581
TfiI	GAWTC	3 cut(s)	308, 374, 530
Tru1I	TTAA	2 cut(s)	107, 386
Tru9I	TTAA	2 cut(s)	107, 386
TscAI	CASTG	2 cut(s)	337, 400
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	6 cut(s)	52, 399, 662, 665, 686, 779
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	321, 351
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	2 cut(s)	337, 400
VneI	GTGCAC	2 cut(s)	421, 868
XapI	RAATTY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	5 cut(s)	69, 579, 588, 708, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.