Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012098.1

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Reverse (-)

29283 .. 29660

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012098.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ctgtcctcatcggaatctgaggaagcagatgatgctgtagatgataaagaaacagttcaacctattactcccagcactgctggcatccgcaaaagagggcgcaagggcattgatgatgccattgcaggagctattttagagatggcagctgcatcaaagctgagaacggctgctatacagcaacgtgatgccagatataccatagctaattgtattaaagcactggatgagatgaaaggcgttgatgagcaactctattttgctgctcttgatctgttcaacaagcccactgcaagggagatgttcttgtctctcaaacacgacaagcgcttgatttggttgcagggcaagtgcagagcagctggtcctggtccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

125

Amino Acids

13.63

Weight (kDa)

6.8

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	59, 280
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	5 cut(s)	131, 149, 160, 206, 362
AluI	AGCT	5 cut(s)	131, 149, 160, 206, 362
Alw26I	GTCTC	1 cut(s)	315
Aor51HI	AGCGCT	1 cut(s)	329
ApeKI	GCWGC	5 cut(s)	146, 149, 170, 263, 359
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	102, 330
AspS9I	GGNCC	2 cut(s)	365, 371
AvaII	GGWCC	2 cut(s)	365, 371
BbvI	GCAGC	5 cut(s)	136, 157, 158, 250, 371
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	5 cut(s)	147, 150, 171, 264, 360
BlsI	GCNGC	5 cut(s)	148, 151, 172, 265, 361
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	2 cut(s)	365, 371
BmgT120I	GGNCC	2 cut(s)	365, 371
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	5 cut(s)	22, 93, 106, 161, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	84, 232
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	9, 152
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	5 cut(s)	136, 157, 158, 250, 371
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	2 cut(s)	10, 153
BspLI	GGNNCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	18, 161
BstF5I	GGATG	2 cut(s)	84, 232
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	2 cut(s)	102, 330
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 81
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	5 cut(s)	136, 157, 158, 250, 371
BtsCI	GGATG	2 cut(s)	84, 232
BtsI	GCAGTG	2 cut(s)	75, 288
BtsIMutI	CAGTG	3 cut(s)	75, 221, 288
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	2 cut(s)	102, 330
Cfr13I	GGNCC	2 cut(s)	365, 371
CviJI	RGCY	7 cut(s)	131, 149, 160, 170, 206, 286, 362
CviKI_1	RGCY	7 cut(s)	131, 149, 160, 170, 206, 286, 362
DdeI	CTNAG	2 cut(s)	18, 161
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	365, 371
Eco47III	AGCGCT	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	367
FaiI	YATR	3 cut(s)	176, 198, 203
FaqI	GGGAC	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	147, 150, 171, 264, 360
FokI	GGATG	2 cut(s)	71, 239
Fsp4HI	GCNGC	5 cut(s)	147, 150, 171, 264, 360
FspBI	CTAG	1 cut(s)	376
GlaI	GCGC	2 cut(s)	101, 329
GluI	GCNGC	5 cut(s)	147, 150, 171, 264, 360
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	331
HhaI	GCGC	2 cut(s)	102, 330
Hin6I	GCGC	2 cut(s)	100, 328
HinP1I	GCGC	2 cut(s)	100, 328
HinfI	GANTC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	13, 19
Hpy188III	TCNNGA	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	125, 152, 293, 343, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 81
HpyF3I	CTNAG	2 cut(s)	18, 161
HpySE526I	ACGT	1 cut(s)	184
HspAI	GCGC	2 cut(s)	100, 328
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	8 cut(s)	66, 85, 111, 205, 209, 329, 348, 354
Lsp1109I	GCAGC	5 cut(s)	136, 157, 158, 250, 371
LweI	GCATC	5 cut(s)	22, 93, 106, 161, 178
MaeI	CTAG	1 cut(s)	376
MaeII	ACGT	1 cut(s)	184
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	3 cut(s)	13, 16, 89
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	149, 362
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	32, 81
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	148, 151, 172, 265, 361
Psp6I	CCWGG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	365, 371
PvuII	CAGCTG	2 cut(s)	149, 362
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	5 cut(s)	147, 150, 171, 264, 360
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	2 cut(s)	365, 371
ScrFI	CCNGG	1 cut(s)	369
SetI	ASST	7 cut(s)	64, 133, 151, 162, 187, 208, 364
SfaNI	GCATC	5 cut(s)	22, 93, 106, 161, 178
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	365, 371
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	187
TasI	AATT	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	3 cut(s)	82, 228, 295
TseI	GCWGC	5 cut(s)	146, 149, 170, 263, 359
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	82, 228, 295
VpaK11BI	GGWCC	2 cut(s)	365, 371
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.