Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Reverse (-)

6048327 .. 6051863

Gene Structure 3537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGCCAGGAACCATCTTGGTTTCAGTTCTTGAATTCATGGACCTTCCATTTTCATCATCATCTTCTTCAATATCGATAAAGGTATCTTTGGGGCCAAGATCAGAGTACCAAATTTGGGAGAGTAGAGACTTGTCCTTCCCATTGACGACTCTTCGGGACAACATGCTTGTTATTCTTCAAGATTCTGAAGGGAATCAGATATCAGAAACAGGTATTGAGACCAGGTCCATAGTTGAAAAGGGTCTTTGGGATGACTTCTTCCCCCTCAAAGGCGGTGGGTTTCTGCATATGAAATTGCAGTTTTTACTCAATGAAGAAGAGCGCAATCAAATCCGTGTGATGCGAGAATCTGCTGTGAAAAAGAAGCATGGGGAGTTCATTCATAGCAGTCCTATTAGTGTGCAAAGTACTCCTGGTGACCGGATCAATGTTGCATCATCTTTGAGTCTTCGCAATGTGATATCAGATAGGAATGAAGAGACTTCTTCATCAGACATCACTGTGCAGCAAAGTGTTAATTTGTCTCCAACTGAATTGAGTCGCAGGGAGTTGGTTGATAACATCGCTGCCCAACCATTTCATGCTAAGATTCCTGCCAAAGCCATTTGTGCTGATGAACCTGCAAGGTTATTAAGAGGCTCACAACCAGTTGTTGATAACCTTCCTAAGCTTCAGGAAGAAAAGCATTACAAACTCGAAAAGCAGCAGAGCCCGCTGAAGAAAACTCCTAGCGTAAAGAACATGATAAGTGCCTTTGAAACTGGTTTAGCGGAGGATGAGAAGCCTCCCATCAAACCAGCACCAATGAAAGTTCAATCAAACAAAACTATAACAGGCAATCTTCCAAAAAACCAGGACTTAAAAGAAGACAAGAAAGTCAGTACAGAAACTTCAGAGTGGATATCAAAACGAGCAGTGAATCCTTTACCTCCAGAACAGTTGCAACATGACACGACATGTGGTGAAAGCGGTGAAGAAAATATTTCACTTGGAGCTTTAGGTGGGACTAAATCATCACATGACACAGTTAAAATTTCAGAGAGGGTACTTGATGATCATAGACACCAACCTAGTAAGATGCTCTATGGAAAGAGAGATTCTGGTGGCAGTCCAGTTATAGAGGAGACTCATCAGCTAGAAATCTCTTCCAGAAATTCTCAAAAGTCCGACATTCAAGGACTTGCAGCCCAAATATGTACTTCAATAGCAAACTGCGAAGATAGGCACAATCCCTTTCAAAGCTCTAGTGGATGGATATTCCCAGATGATGCAATACAATTTTGTATAACAACTAGTGGTAAAAAGGTGATGGATTTTCTGGGAAGTTGCAGTATGATGAAGCCAAGTATCCATCAAGATAGAAAGAGTTTGTCTTCCTCAAAAAATGCAGAAGACCAGCAGGATAACGTGGATAGCGGTAATAGTAATGAAGTGAACAGAAATGAGAAGAATCACAGACCAAAAGAACTACATAAGGTTCAGAAATCAGAAGAAACAGAGACTTCTGGGGTGGCAGTTGGACAGGCAATAAAAGTTGCAATTATGATTGGATTTGGAACACTTGTTCTTCTCACTAGACAAAGGAAAAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

531

Amino Acids

58.92

Weight (kDa)

6.31

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	628
AciI	CCGC	5 cut(s)	273, 713, 770, 969, 1416
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	4 cut(s)	32, 111, 1032, 1153
AcuI	CTGAAG	4 cut(s)	207, 656, 737, 876
AfaI	GTAC	5 cut(s)	107, 409, 883, 1047, 1198
AfiI	CCNNNNNNNGG	2 cut(s)	115, 269
AflIII	ACRYGT	1 cut(s)	956
AgsI	TTSAA	9 cut(s)	32, 69, 179, 236, 758, 815, 1175, 1203, 1238
AhlI	ACTAGT	1 cut(s)	1292
AjnI	CCWGG	4 cut(s)	4, 221, 412, 852
AloI	GAACNNNNNNTCC	2 cut(s)	1548, 1580
AluBI	AGCT	4 cut(s)	670, 995, 1135, 1242
AluI	AGCT	4 cut(s)	670, 995, 1135, 1242
Alw26I	GTCTC	6 cut(s)	120, 212, 473, 528, 1118, 1493
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	4 cut(s)	505, 566, 703, 1184
ApoI	RAATTY	4 cut(s)	32, 111, 1032, 1153
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	3 cut(s)	40, 92, 225
AsuHPI	GGTGA	4 cut(s)	428, 974, 983, 1318
AvaII	GGWCC	2 cut(s)	40, 225
BanII	GRGCYC	1 cut(s)	713
BarI	GAAGNNNNNNTAC	2 cut(s)	874, 906
BbsI	GAAGAC	4 cut(s)	440, 873, 1365, 1398
BbvI	GCAGC	4 cut(s)	517, 553, 715, 1196
BccI	CCATC	5 cut(s)	20, 797, 1245, 1303, 1359
BciT130I	CCWGG	4 cut(s)	6, 223, 414, 854
BciVI	GTATCC	1 cut(s)	1358
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	6 cut(s)	120, 212, 473, 528, 1118, 1493
BcuI	ACTAGT	1 cut(s)	1292
BfaI	CTAG	6 cut(s)	729, 1071, 1136, 1245, 1293, 1575
BfuAI	ACCTGC	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	1358
BisI	GCNGC	4 cut(s)	506, 567, 704, 1185
BlsI	GCNGC	4 cut(s)	507, 568, 705, 1186
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	4 cut(s)	6, 223, 414, 854
Bme18I	GGWCC	2 cut(s)	40, 225
BmgT120I	GGNCC	3 cut(s)	40, 92, 225
BmiI	GGNNCC	2 cut(s)	10, 93
BmrFI	CCNGG	4 cut(s)	6, 223, 414, 854
BmsI	GCATC	4 cut(s)	330, 443, 1068, 1258
BpiI	GAAGAC	4 cut(s)	440, 873, 1365, 1398
BpmI	CTGGAG	1 cut(s)	915
Bpu10I	CCTNAGC	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 269
Bse1I	ACTGG	3 cut(s)	647, 766, 1112
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	4 cut(s)	6, 223, 414, 854
BseCI	ATCGAT	1 cut(s)	74
BseGI	GGATG	3 cut(s)	256, 781, 1256
BseLI	CCNNNNNNNGG	2 cut(s)	115, 269
BseMI	GCAATG	1 cut(s)	460
BseNI	ACTGG	3 cut(s)	647, 766, 1112
BseRI	GAGGAG	1 cut(s)	1136
BseXI	GCAGC	4 cut(s)	517, 553, 715, 1196
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	170, 1018
BslI	CCNNNNNNNGG	2 cut(s)	115, 269
BsmAI	GTCTC	6 cut(s)	120, 212, 473, 528, 1118, 1493
BsmFI	GGGAC	2 cut(s)	170, 1018
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	3 cut(s)	98, 423, 1054
BspACI	CCGC	5 cut(s)	273, 713, 770, 969, 1416
BspANI	GGCC	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	10, 93
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	431
BspQI	GCTCTTC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	647, 766, 1112
BssMI	GATC	3 cut(s)	98, 423, 1054
Bst2UI	CCWGG	4 cut(s)	6, 223, 414, 854
Bst4CI	ACNGT	3 cut(s)	502, 939, 1027
Bst6I	CTCTTC	4 cut(s)	156, 312, 471, 1150
BstC8I	GCNNGC	1 cut(s)	713
BstDEI	CTNAG	2 cut(s)	585, 666
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	256, 781, 1256
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	101, 426, 1057
BstMAI	GTCTC	6 cut(s)	120, 212, 473, 528, 1118, 1493
BstMBI	GATC	3 cut(s)	98, 423, 1054
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 712
BstNI	CCWGG	4 cut(s)	6, 223, 414, 854
BstNSI	RCATGY	2 cut(s)	166, 960
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	4, 221, 412, 852
BstV1I	GCAGC	4 cut(s)	517, 553, 715, 1196
BstV2I	GAAGAC	4 cut(s)	440, 873, 1365, 1398
Bsu15I	ATCGAT	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	1358
BsuRI	GGCC	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	256, 781, 1256
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	2 cut(s)	498, 921
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	713
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	40, 92, 225
ClaI	ATCGAT	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	5 cut(s)	106, 408, 882, 1046, 1197
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	8 cut(s)	37, 163, 368, 581, 742, 947, 957, 1019
CviQI	GTAC	5 cut(s)	106, 408, 882, 1046, 1197
DdeI	CTNAG	2 cut(s)	585, 666
DpnI	GATC	3 cut(s)	100, 425, 1056
DpnII	GATC	3 cut(s)	98, 423, 1054
DrdI	GACNNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	875
Eam1104I	CTCTTC	4 cut(s)	156, 312, 471, 1150
EarI	CTCTTC	4 cut(s)	156, 312, 471, 1150
Eco24I	GRGCYC	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	212
Eco32I	GATATC	3 cut(s)	201, 462, 903
Eco47I	GGWCC	2 cut(s)	40, 225
Eco57I	CTGAAG	4 cut(s)	207, 656, 737, 876
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	4 cut(s)	4, 221, 412, 852
EcoRV	GATATC	3 cut(s)	201, 462, 903
EcoT38I	GRGCYC	1 cut(s)	713
FaeI	CATG	8 cut(s)	40, 166, 371, 584, 745, 950, 960, 1022
FaqI	GGGAC	2 cut(s)	170, 1018
FatI	CATG	8 cut(s)	36, 162, 367, 580, 741, 946, 956, 1018
FauI	CCCGC	1 cut(s)	720
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	506, 567, 704, 1185
FokI	GGATG	3 cut(s)	263, 788, 1263
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	4 cut(s)	506, 567, 704, 1185
FspBI	CTAG	6 cut(s)	729, 1071, 1136, 1245, 1293, 1575
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	506, 567, 704, 1185
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	8 cut(s)	40, 166, 371, 584, 745, 950, 960, 1022
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	668
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	4 cut(s)	428, 974, 983, 1318
Hpy166II	GTNNAC	1 cut(s)	1435
Hpy188III	TCNNGA	7 cut(s)	29, 155, 179, 674, 932, 1149, 1355
Hpy8I	GTNNAC	1 cut(s)	1435
HpyAV	CCTTC	4 cut(s)	53, 145, 182, 671
HpyCH4III	ACNGT	3 cut(s)	502, 939, 1027
HpyCH4IV	ACGT	1 cut(s)	1407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 712
HpyF3I	CTNAG	2 cut(s)	585, 666
HpySE526I	ACGT	1 cut(s)	1407
Hsp92II	CATG	8 cut(s)	40, 166, 371, 584, 745, 950, 960, 1022
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	98, 423, 1054
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	992
Lsp1109I	GCAGC	4 cut(s)	517, 553, 715, 1196
LweI	GCATC	4 cut(s)	330, 443, 1068, 1258
MabI	ACCWGGT	1 cut(s)	221
MaeI	CTAG	6 cut(s)	729, 1071, 1136, 1245, 1293, 1575
MaeII	ACGT	1 cut(s)	1407
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	100, 425, 1056
MboI	GATC	3 cut(s)	98, 423, 1054
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	9 cut(s)	32, 111, 293, 517, 533, 1032, 1153, 1277, 1539
MlyI	GAGTC	4 cut(s)	142, 454, 547, 1120
MmeI	TCCRAC	3 cut(s)	551, 1191, 1498
MnlI	CCTC	8 cut(s)	275, 629, 766, 795, 939, 1035, 1114, 1387
MseI	TTAA	4 cut(s)	516, 632, 860, 1029
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	4 cut(s)	6, 223, 414, 854
MvaI	CCWGG	4 cut(s)	6, 223, 414, 854
MwoI	GCNNNNNNNGC	2 cut(s)	608, 712
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	3 cut(s)	98, 423, 1054
NlaIII	CATG	8 cut(s)	40, 166, 371, 584, 745, 950, 960, 1022
NlaIV	GGNNCC	2 cut(s)	10, 93
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	2 cut(s)	166, 960
PciI	ACATGT	1 cut(s)	956
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	7 cut(s)	182, 193, 347, 589, 919, 1097, 1450
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	507, 568, 705, 1186
PleI	GAGTC	4 cut(s)	142, 453, 546, 1120
PpsI	GAGTC	4 cut(s)	142, 453, 546, 1120
PscI	ACATGT	1 cut(s)	956
Psp6I	CCWGG	4 cut(s)	4, 221, 412, 852
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	4 cut(s)	4, 221, 412, 852
PspN4I	GGNNCC	2 cut(s)	10, 93
PspPI	GGNCC	3 cut(s)	40, 92, 225
PsyI	GACNNNGTC	1 cut(s)	223
RsaI	GTAC	5 cut(s)	107, 409, 883, 1047, 1198
RsaNI	GTAC	5 cut(s)	106, 408, 882, 1046, 1197
RseI	CAYNNNNRTG	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	516, 632, 860, 1029
SatI	GCNGC	4 cut(s)	506, 567, 704, 1185
Sau3AI	GATC	3 cut(s)	98, 423, 1054
Sau96I	GGNCC	3 cut(s)	40, 92, 225
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	4 cut(s)	142, 454, 547, 1120
ScrFI	CCNGG	4 cut(s)	6, 223, 414, 854
SduI	GDGCHC	1 cut(s)	713
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	4 cut(s)	330, 443, 1068, 1258
SinI	GGWCC	2 cut(s)	40, 225
SmiMI	CAYNNNNRTG	1 cut(s)	500
SpeI	ACTAGT	1 cut(s)	1292
Sse9I	AATT	9 cut(s)	32, 111, 293, 517, 533, 1032, 1153, 1277, 1539
SsiI	CCGC	5 cut(s)	273, 713, 770, 969, 1416
SspI	AATATT	1 cut(s)	982
SspMI	CTAG	6 cut(s)	729, 1071, 1136, 1245, 1293, 1575
StyD4I	CCNGG	4 cut(s)	4, 221, 412, 852
TaaI	ACNGT	3 cut(s)	502, 939, 1027
TaiI	ACGT	1 cut(s)	1410
TaqI	TCGA	2 cut(s)	74, 696
TasI	AATT	9 cut(s)	32, 111, 293, 517, 533, 1032, 1153, 1277, 1539
TatI	WGTACW	3 cut(s)	407, 881, 1196
TfiI	GAWTC	7 cut(s)	182, 193, 347, 589, 919, 1097, 1450
Tru1I	TTAA	4 cut(s)	516, 632, 860, 1029
Tru9I	TTAA	4 cut(s)	516, 632, 860, 1029
TscAI	CASTG	2 cut(s)	505, 921
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	4 cut(s)	505, 566, 703, 1184
Tsp45I	GTSAC	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	505, 921
Tth111I	GACNNNGTC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	40, 225
XapI	RAATTY	4 cut(s)	32, 111, 1032, 1153
XceI	RCATGY	2 cut(s)	166, 960
XspI	CTAG	6 cut(s)	729, 1071, 1136, 1245, 1293, 1575
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.