RchiOBHm_Chr2g0099061
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002173
Physical Location & Seq
Forward (+)
11352144 .. 11354331
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47379

Sequence Viewer

Length: 801 bp
ATGGTTGATCAGGTACACCAAGGGAATAGAAAAAACAATTACTTTGGCAAGAAAGCATGGAAGTATATCTGCGATGAATTCTATAAGAGAACGGGTCTGAAATGGGACAAGGAACAACTGAAGAACCGATGTGCAGTTATGAAGAGGATGTATATTATAATCAAGTCACTTCTTGATCGTAGTGATTTCAGTTGGGATGAAGCCACAGGGACCATCACAGCTAGTGATGAAGTATGGGCTGAATACACGAAGGAACATCCTGATGCAGAGACTTTAAGAAGCAGTGGCTGCCCAATTTACAAAGAGCTATGCATAATATTTTCAGAACCAGCAACCAATGGGAATCATGATCATCCAGCTGAACACGAGGAAGGGACTCCAAATTTTCATCAATTGGAGCCATTGTCCATCCCGCAAGAAGTACCGTCCTCATCGGAATCTGAGGAAGCAGATGATGGTGTAGATGATAAAGAAACAGTTCAACCTATTACTCCCAGCACTACTGGCATCCGCAAAAGAGGGCGCAAAGGCATTGATGATGCCATTGCAGGAGCTATTTTAGAGATGGCAGCTGCATCAAAGCTGAGAACGGCTGCTATACAGCAACGTGATGCCAGATATACCATAGCTAATTGTATTAAAGCACTGGATGAGATGAAAGGCGTTGATGAGCAACTCTATTTTGCTGCTCTTGATCTGTTCAACAAGCCCACTGCAAGGGAGATGTTCTTGTCTCTCAAACACGACAAGCGCTTGATTTGGTTGCAGGGCAAGTGCAGAGCAGCTGGTCCTGTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

266

Amino Acids

30.09

Weight (kDa)

5.87

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 82 6.2e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AciI CCGC 2 cut(s) 413, 511
AcsI RAATTY 2 cut(s) 77, 382
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 15, 423
AfeI AGCGCT 1 cut(s) 752
AfiI CCNNNNNNNGG 1 cut(s) 717
AgsI TTSAA 2 cut(s) 482, 703
AluBI AGCT 8 cut(s) 221, 307, 359, 554, 572, 583, 629, 785
AluI AGCT 8 cut(s) 221, 307, 359, 554, 572, 583, 629, 785
Alw26I GTCTC 2 cut(s) 263, 738
AlwNI CAGNNNCTG 1 cut(s) 288
Aor51HI AGCGCT 1 cut(s) 752
ApeKI GCWGC 6 cut(s) 288, 569, 572, 593, 686, 782
ApoI RAATTY 2 cut(s) 77, 382
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 2 cut(s) 525, 753
AspS9I GGNCC 2 cut(s) 210, 788
AvaII GGWCC 2 cut(s) 210, 788
BauI CACGAG 1 cut(s) 365
BbvI GCAGC 6 cut(s) 275, 559, 580, 581, 673, 794
BccI CCATC 4 cut(s) 221, 416, 449, 559
BceAI ACGGC 1 cut(s) 606
BclI TGATCA 2 cut(s) 7, 349
BcoDI GTCTC 2 cut(s) 263, 738
BfaI CTAG 2 cut(s) 222, 799
BfoI RGCGCY 1 cut(s) 754
BisI GCNGC 6 cut(s) 289, 570, 573, 594, 687, 783
BlsI GCNGC 6 cut(s) 290, 571, 574, 595, 688, 784
Bme18I GGWCC 2 cut(s) 210, 788
BmgT120I GGNCC 2 cut(s) 210, 788
BmiI GGNNCC 2 cut(s) 211, 399
BmsI GCATC 5 cut(s) 253, 516, 529, 584, 601
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 717
Bse1I ACTGG 2 cut(s) 508, 651
Bse3DI GCAATG 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 7 cut(s) 153, 202, 256, 352, 408, 507, 655
BseLI CCNNNNNNNGG 1 cut(s) 717
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 432, 575
BseNI ACTGG 2 cut(s) 508, 651
BseXI GCAGC 6 cut(s) 275, 559, 580, 581, 673, 794
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 2 cut(s) 153, 796
BslFI GGGAC 3 cut(s) 119, 223, 388
BslI CCNNNNNNNGG 1 cut(s) 717
BsmAI GTCTC 2 cut(s) 263, 738
BsmFI GGGAC 3 cut(s) 119, 223, 388
Bsp143I GATC 4 cut(s) 7, 175, 349, 694
BspACI CCGC 2 cut(s) 413, 511
BspCNI CTCAG 2 cut(s) 433, 576
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 211, 399
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 2 cut(s) 508, 651
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 4 cut(s) 7, 175, 349, 694
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 426, 478
Bst6I CTCTTC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 441, 584
BstF5I GGATG 7 cut(s) 153, 202, 256, 352, 408, 507, 655
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 2 cut(s) 525, 753
BstKTI GATC 4 cut(s) 10, 178, 352, 697
BstMAI GTCTC 2 cut(s) 263, 738
BstMBI GATC 4 cut(s) 7, 175, 349, 694
BstMWI GCNNNNNNNGC 2 cut(s) 288, 504
BstV1I GCAGC 6 cut(s) 275, 559, 580, 581, 673, 794
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 7 cut(s) 153, 202, 256, 352, 408, 507, 655
BtsI GCAGTG 2 cut(s) 289, 711
BtsIMutI CAGTG 3 cut(s) 289, 644, 711
CaiI CAGNNNCTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 346
CfoI GCGC 2 cut(s) 525, 753
Cfr13I GGNCC 2 cut(s) 210, 788
Csp6I GTAC 2 cut(s) 14, 422
CviAII CATG 2 cut(s) 57, 347
CviQI GTAC 2 cut(s) 14, 422
DdeI CTNAG 2 cut(s) 441, 584
DpnI GATC 4 cut(s) 9, 177, 351, 696
DpnII GATC 4 cut(s) 7, 175, 349, 694
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 210, 788
Eco47III AGCGCT 1 cut(s) 752
Eco57I CTGAAG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 60, 350
FaqI GGGAC 3 cut(s) 119, 223, 388
FatI CATG 2 cut(s) 56, 346
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 2 cut(s) 7, 349
Fnu4HI GCNGC 6 cut(s) 289, 570, 573, 594, 687, 783
FokI GGATG 7 cut(s) 160, 209, 243, 339, 395, 494, 662
Fsp4HI GCNGC 6 cut(s) 289, 570, 573, 594, 687, 783
FspBI CTAG 2 cut(s) 222, 799
GlaI GCGC 2 cut(s) 524, 752
GluI GCNGC 6 cut(s) 289, 570, 573, 594, 687, 783
GsaI CCCAGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 754
HhaI GCGC 2 cut(s) 525, 753
Hin1II CATG 2 cut(s) 60, 350
Hin6I GCGC 2 cut(s) 523, 751
HinP1I GCGC 2 cut(s) 523, 751
HinfI GANTC 3 cut(s) 343, 376, 437
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 99, 325, 436, 442
Hpy188III TCNNGA 4 cut(s) 173, 260, 347, 692
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 244, 365
HpyCH4III ACNGT 2 cut(s) 426, 478
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 8 cut(s) 134, 266, 312, 548, 575, 716, 766, 777
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 504
HpyF3I CTNAG 2 cut(s) 441, 584
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 2 cut(s) 60, 350
HspAI GCGC 2 cut(s) 523, 751
Ksp22I TGATCA 2 cut(s) 7, 349
Kzo9I GATC 4 cut(s) 7, 175, 349, 694
LmnI GCTCC 2 cut(s) 397, 551
Lsp1109I GCAGC 6 cut(s) 275, 559, 580, 581, 673, 794
LweI GCATC 5 cut(s) 253, 516, 529, 584, 601
MaeI CTAG 2 cut(s) 222, 799
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 165
MalI GATC 4 cut(s) 9, 177, 351, 696
MboI GATC 4 cut(s) 7, 175, 349, 694
MboII GAAGA 2 cut(s) 133, 154
MfeI CAATTG 1 cut(s) 392
MluCI AATT 6 cut(s) 37, 77, 294, 382, 392, 631
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 5 cut(s) 138, 361, 436, 439, 512
Mph1103I ATGCAT 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 275, 639
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 3 cut(s) 359, 572, 785
MunI CAATTG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 288, 504
NdeII GATC 4 cut(s) 7, 175, 349, 694
NlaIII CATG 2 cut(s) 60, 350
NlaIV GGNNCC 2 cut(s) 211, 399
NmuCI GTSAC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 314
PagI TCATGA 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 343, 437
PkrI GCNGC 6 cut(s) 290, 571, 574, 595, 688, 784
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PsiI TTATAA 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 494
PspN4I GGNNCC 2 cut(s) 211, 399
PspPI GGNCC 2 cut(s) 210, 788
PstNI CAGNNNCTG 1 cut(s) 288
PvuII CAGCTG 3 cut(s) 359, 572, 785
RsaI GTAC 2 cut(s) 15, 423
RsaNI GTAC 2 cut(s) 14, 422
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 275, 639
SatI GCNGC 6 cut(s) 289, 570, 573, 594, 687, 783
Sau3AI GATC 4 cut(s) 7, 175, 349, 694
Sau96I GGNCC 2 cut(s) 210, 788
SchI GAGTC 1 cut(s) 370
SfaNI GCATC 5 cut(s) 253, 516, 529, 584, 601
SinI GGWCC 2 cut(s) 210, 788
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 6 cut(s) 37, 77, 294, 382, 392, 631
SsiI CCGC 2 cut(s) 413, 511
SspI AATATT 1 cut(s) 318
SspMI CTAG 2 cut(s) 222, 799
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 426, 478
TaiI ACGT 1 cut(s) 610
TasI AATT 6 cut(s) 37, 77, 294, 382, 392, 631
TfiI GAWTC 2 cut(s) 343, 437
Tru1I TTAA 2 cut(s) 275, 639
Tru9I TTAA 2 cut(s) 275, 639
TscAI CASTG 3 cut(s) 289, 651, 718
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 6 cut(s) 288, 569, 572, 593, 686, 782
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 6 cut(s) 90, 155, 213, 243, 377, 671
TspRI CASTG 3 cut(s) 289, 651, 718
VpaK11BI GGWCC 2 cut(s) 210, 788
XapI RAATTY 2 cut(s) 77, 382
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 222, 799
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.