Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015712.1

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2014

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015712.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

aaggagatgttaaatcggagattcggtgcttatagtggtacttgttcatctgatttgacggttatagctaccgagtactcgcctgtgtataaatggcttggatttagggcacagggaggtcttgaagacaatgttgaaaggatgagtttgggtgatcaagaaagtgaaattgatgacgatatagaagaatgtttctcggcctcatcgtattcatcattgggcatttgggtttctaaactcattggctacaacagcagttcaatcctcaacggagagttgggctttttttcaaagatggcaagccatgttactcggtcgagggtgcagccacagcttcaggagcatcaatcaagggctaggtggacaacacatcttactaagattcttgcaagcttaatggttgatcaggtacaccaagggaatagaaaaaacaattactttggcaagaaagcatggaagtatatctgcgatgaattctataagagaaccggtctgaaatgggacaaggaacaactgaagaaccgatgtgcagttatgaagaggatgtatattataatcaagtcacttcttgatcgtagtgatttcagttgggatgaagccacagggaccatcacagccagtgatgaagtatgggctgaatacacgaaggaacatgctgatgcagagactttaagaagcagtggctgcccaatttacaaagagctatgcataatattttcagaaccagcaaccaatgggaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

247

Amino Acids

28.23

Weight (kDa)

6.27

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	320, 536
AfaI	GTAC	3 cut(s)	40, 77, 411
AgeI	ACCGGT	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	125, 137, 261, 291
AluBI	AGCT	4 cut(s)	68, 334, 393, 703
AluI	AGCT	4 cut(s)	68, 334, 393, 703
Alw26I	GTCTC	1 cut(s)	659
AlwNI	CAGNNNCTG	1 cut(s)	684
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	325, 684
ApoI	RAATTY	1 cut(s)	473
AsiGI	ACCGGT	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	606
BaeGI	GKGCMC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	337, 671
BccI	CCATC	2 cut(s)	289, 617
BclI	TGATCA	2 cut(s)	154, 403
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	326, 685
BlsI	GCNGC	2 cut(s)	327, 686
BmcAI	AGTACT	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	607
BmsI	GCATC	2 cut(s)	352, 649
BpiI	GAAGAC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	3 cut(s)	147, 549, 598
BseNI	ACTGG	1 cut(s)	618
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	337, 671
BsgI	GTGCAG	2 cut(s)	344, 549
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	488
BsiEI	CGRYCG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	515, 619
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	2 cut(s)	515, 619
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	154, 403, 571
BspANI	GGCC	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	618
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	3 cut(s)	154, 403, 571
BssT1I	CCWWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	301, 391
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	147, 549, 598
BstKTI	GATC	3 cut(s)	157, 406, 574
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	3 cut(s)	154, 403, 571
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 331, 340, 684
BstNSI	RCATGY	1 cut(s)	656
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	337, 671
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	200
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	147, 549, 598
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	2 cut(s)	625, 685
Cac8I	GCNNGC	2 cut(s)	301, 391
CaiI	CAGNNNCTG	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	3 cut(s)	39, 76, 410
CspAI	ACCGGT	1 cut(s)	488
CviAII	CATG	3 cut(s)	305, 453, 653
CviQI	GTAC	3 cut(s)	39, 76, 410
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	3 cut(s)	156, 405, 573
DpnII	GATC	3 cut(s)	154, 403, 571
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	320, 536
EcoRI	GAATTC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	308, 456, 656
FaqI	GGGAC	2 cut(s)	515, 619
FatI	CATG	3 cut(s)	304, 452, 652
FbaI	TGATCA	2 cut(s)	154, 403
Fnu4HI	GCNGC	2 cut(s)	326, 685
FokI	GGATG	3 cut(s)	154, 556, 605
Fsp4HI	GCNGC	2 cut(s)	326, 685
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	326, 685
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	3 cut(s)	308, 456, 656
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	21, 382
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	363, 412
Hpy188I	TCNGA	4 cut(s)	18, 52, 495, 721
Hpy188III	TCNNGA	4 cut(s)	122, 158, 338, 569
Hpy8I	GTNNAC	2 cut(s)	363, 412
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	5 cut(s)	325, 389, 530, 662, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 331, 340, 684
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	308, 456, 656
Ksp22I	TGATCA	2 cut(s)	154, 403
Kzo9I	GATC	3 cut(s)	154, 403, 571
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	7 cut(s)	96, 98, 323, 392, 502, 588, 631
Lsp1109I	GCAGC	2 cut(s)	337, 671
LweI	GCATC	2 cut(s)	352, 649
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	307, 561
MalI	GATC	3 cut(s)	156, 405, 573
MboI	GATC	3 cut(s)	154, 403, 571
MboII	GAAGA	4 cut(s)	137, 197, 529, 550
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	4 cut(s)	168, 433, 473, 690
MnlI	CCTC	5 cut(s)	110, 211, 275, 312, 534
Mph1103I	ATGCAT	1 cut(s)	710
MseI	TTAA	3 cut(s)	11, 395, 671
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	4 cut(s)	252, 331, 340, 684
NdeII	GATC	3 cut(s)	154, 403, 571
NlaIII	CATG	3 cut(s)	308, 456, 656
NlaIV	GGNNCC	1 cut(s)	607
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	710
NspI	RCATGY	1 cut(s)	656
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	21, 382
PinAI	ACCGGT	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	327, 686
PsiI	TTATAA	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	684
RsaI	GTAC	3 cut(s)	40, 77, 411
RsaNI	GTAC	3 cut(s)	39, 76, 410
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	11, 395, 671
SatI	GCNGC	2 cut(s)	326, 685
Sau3AI	GATC	3 cut(s)	154, 403, 571
Sau96I	GGNCC	1 cut(s)	606
ScaI	AGTACT	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	70, 121, 336, 362, 395, 411, 705
SfaNI	GCATC	2 cut(s)	352, 649
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	657
Sse9I	AATT	4 cut(s)	168, 433, 473, 690
SspI	AATATT	1 cut(s)	714
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	317
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	168, 433, 473, 690
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	21, 382
Tru1I	TTAA	3 cut(s)	11, 395, 671
Tru9I	TTAA	3 cut(s)	11, 395, 671
TscAI	CASTG	2 cut(s)	625, 685
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	325, 684
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	6 cut(s)	36, 201, 486, 551, 609, 639
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	625, 685
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	656
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.