Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000577.1

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

65291 .. 67112

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000577.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggggaagaggagcgctctggtagtcttgtcatcggacgacgaagagaccgatcgttcactgagctccaatcgtagccgtacaaggtcgtcgtcggcgtcgagattgatctcttcggctccggcgaagaaccccgggcgagcgaagaaggctcgggtttcgggctctcgctctagcttgggctcagtgtccactaattgggatgaggtaataatttgtgaatttcttggtgttgcttttgaattttactgttcggttcagtgtgaaattagctgtgggaatctgaagtgggattttaatgtgacgcaggtcagattgtcctttggagattttgatgaagtgttcagtgctggttccaaggtagctgctggttctggaaggagcaatgtgaaggagttatgggttgagaaatacaaaccccattcgcttgacgagcttgctgttcacaagaaaaaggtccaagaagttaagggttggtttgaagaacgattgacagattcaaagggtaaatctagtaatcacgctcttgtcatcactgggcaagctggagttggaaaatctgcaactattcatgtgattgcatctcagcttgctgctacattgtgtgaatggaacacgccaactccaatagtttggcaagaacatttatataactctagtacaggtatagtagattctgttcatggagttacttgggatataagtacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

236

Amino Acids

25.72

Weight (kDa)

8.25

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	221, 242
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	82, 661, 706
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	3 cut(s)	242, 482, 501
AluBI	AGCT	7 cut(s)	66, 177, 273, 365, 436, 545, 589
AluI	AGCT	7 cut(s)	66, 177, 273, 365, 436, 545, 589
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	41
Ama87I	CYCGRG	2 cut(s)	134, 153
Aor51HI	AGCGCT	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	365, 593
ApoI	RAATTY	2 cut(s)	221, 242
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	2 cut(s)	135, 136
AvaI	CYCGRG	2 cut(s)	134, 153
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	3 cut(s)	68, 167, 185
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	352, 580
BceAI	ACGGC	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	135, 136
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	174, 513, 657
BfoI	RGCGCY	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	366, 594
BlsI	GCNGC	2 cut(s)	367, 595
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	2 cut(s)	135, 136
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	2 cut(s)	134, 153
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	120, 355
BmrFI	CCNGG	2 cut(s)	135, 136
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	308
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	567
BpuMI	CCSGG	2 cut(s)	135, 136
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	133, 134, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	391
BseDI	CCNNGG	3 cut(s)	133, 134, 357
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	53, 198, 599
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	352, 580
Bsh1285I	CGRYCG	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	2 cut(s)	134, 153
BsiSI	CCGG	2 cut(s)	122, 135
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	134, 153
Bsp1286I	GDGCHC	3 cut(s)	68, 167, 185
Bsp143I	GATC	2 cut(s)	52, 108
BspCNI	CTCAG	3 cut(s)	54, 197, 598
BspLI	GGNNCC	2 cut(s)	120, 355
BspMI	ACCTGC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	133, 134, 357
BssMI	GATC	2 cut(s)	52, 108
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	2, 39, 118
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	141, 438, 543, 591
BstDEI	CTNAG	3 cut(s)	62, 184, 585
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	55, 111
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	52, 108
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 433
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	133, 134
BstV1I	GCAGC	2 cut(s)	352, 580
BstXI	CCANNNNNNTGG	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	5 cut(s)	59, 192, 266, 352, 534
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	4 cut(s)	141, 438, 543, 591
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	457
Cfr9I	CCCGGG	1 cut(s)	134
CseI	GACGC	2 cut(s)	87, 313
Csp6I	GTAC	3 cut(s)	81, 660, 705
CviAII	CATG	2 cut(s)	572, 683
CviQI	GTAC	3 cut(s)	81, 660, 705
DdeI	CTNAG	3 cut(s)	62, 184, 585
DpnI	GATC	2 cut(s)	54, 110
DpnII	GATC	2 cut(s)	52, 108
Eam1104I	CTCTTC	3 cut(s)	2, 39, 118
EarI	CTCTTC	3 cut(s)	2, 39, 118
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	3 cut(s)	68, 167, 185
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	457
Eco47III	AGCGCT	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	2 cut(s)	134, 153
EcoICRI	GAGCTC	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	3 cut(s)	68, 167, 185
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	575, 686
FaiI	YATR	7 cut(s)	400, 573, 649, 651, 668, 684, 701
FatI	CATG	2 cut(s)	571, 682
Fnu4HI	GCNGC	2 cut(s)	366, 594
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	3 cut(s)	68, 167, 185
Fsp4HI	GCNGC	2 cut(s)	366, 594
FspBI	CTAG	3 cut(s)	174, 513, 657
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	366, 594
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	2 cut(s)	122, 135
HgaI	GACGC	2 cut(s)	87, 313
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	575, 686
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	280, 497, 674
HpaII	CCGG	2 cut(s)	122, 135
Hpy166II	GTNNAC	3 cut(s)	59, 192, 445
Hpy188I	TCNGA	3 cut(s)	37, 285, 314
Hpy188III	TCNNGA	2 cut(s)	102, 375
Hpy8I	GTNNAC	3 cut(s)	59, 192, 445
Hpy99I	CGWCG	4 cut(s)	44, 94, 97, 103
HpyAV	CCTTC	3 cut(s)	142, 372, 385
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	563, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 433
HpyF3I	CTNAG	3 cut(s)	62, 184, 585
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	575, 686
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	52, 108
LmnI	GCTCC	4 cut(s)	12, 71, 124, 381
Lsp1109I	GCAGC	2 cut(s)	352, 580
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	3 cut(s)	174, 513, 657
MaeIII	GTNAC	2 cut(s)	301, 688
MalI	GATC	2 cut(s)	54, 110
MboI	GATC	2 cut(s)	52, 108
MboII	GAAGA	6 cut(s)	19, 56, 105, 139, 157, 494
MhlI	GDGCHC	3 cut(s)	68, 167, 185
MluCI	AATT	5 cut(s)	196, 213, 221, 242, 267
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	2 cut(s)	3, 199
MseI	TTAA	3 cut(s)	297, 468, 709
MspI	CCGG	2 cut(s)	122, 135
MspR9I	CCNGG	2 cut(s)	135, 136
MwoI	GCNNNNNNNGC	2 cut(s)	149, 433
NciI	CCSGG	2 cut(s)	135, 136
NdeII	GATC	2 cut(s)	52, 108
NlaIII	CATG	2 cut(s)	575, 686
NlaIV	GGNNCC	2 cut(s)	120, 355
NmuCI	GTSAC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 95, 98, 122
PfeI	GAWTC	3 cut(s)	280, 497, 674
PflMI	CCANNNNNTGG	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	367, 595
Ple19I	CGATCG	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	120, 355
PspPI	GGNCC	1 cut(s)	457
PsrI	GAACNNNNNNTAC	2 cut(s)	663, 695
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	3 cut(s)	82, 661, 706
RsaNI	GTAC	3 cut(s)	81, 660, 705
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	297, 468, 709
SatI	GCNGC	2 cut(s)	366, 594
Sau3AI	GATC	2 cut(s)	52, 108
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	135, 136
SduI	GDGCHC	3 cut(s)	68, 167, 185
SfaNI	GCATC	1 cut(s)	590
SinI	GGWCC	1 cut(s)	457
SmaI	CCCGGG	1 cut(s)	136
Sse9I	AATT	5 cut(s)	196, 213, 221, 242, 267
SspMI	CTAG	3 cut(s)	174, 513, 657
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	133, 134
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	101
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	196, 213, 221, 242, 267
TatI	WGTACW	2 cut(s)	659, 704
TfiI	GAWTC	3 cut(s)	280, 497, 674
Tru1I	TTAA	3 cut(s)	297, 468, 709
Tru9I	TTAA	3 cut(s)	297, 468, 709
TscAI	CASTG	5 cut(s)	66, 192, 266, 352, 541
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	365, 593
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	351, 560, 671
TspMI	CCCGGG	1 cut(s)	134
TspRI	CASTG	5 cut(s)	66, 192, 266, 352, 541
Van91I	CCANNNNNTGG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	2 cut(s)	221, 242
XmaI	CCCGGG	1 cut(s)	134
XspI	CTAG	3 cut(s)	174, 513, 657
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.