Rorug02G0076100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002173
Physical Location & Seq
Forward (+)
6016663 .. 6020385
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0076100.1

Sequence Viewer

Length: 1242 bp
ATGGCGTACTTGAGCATGGGGGAGGCGCACAGAAGAATCAACGACTACCTGAACCGCTTCTGCGACGCCGTTTCGAACCAGGACGGCGATTTACTCAAGCGCCTTCTTTCTCTCTCCTCCAACAACCCCTCCATTCTCTCCCTCGCCGACGCCCTCAACGTTTTCCAGGACGCGAATAGATTGATTAAGCAGAACGATAACTATGCTCAATTCGGTGAAATTCTGGTTCATCTGTTCCGTGCTTTTCAGAGTTTCCGAGTCGGAAGCTTCGTTGATTCGTACCAGGCATTTGAGAAAGCTGCAAATGCTTTTATTCAGGAGTTTAGGAACTGGGACACCGCTTGGGCTTTGCAAGCATTGTATGTGATGGTTTATGAAATCAGGGTTCTAGCTGAGAGGGCTGATAAGGAATTGGCGACGAATGGGAAATCGCCAGAGAAGTTGAAGGGAGCTGGCTCTTTCCTTATGAAAGTATTTGGGGTTCTTGCTGGTAAAGGCCCAAAACGTGTAGGAGCATTATACGTGACTTGCCAGTTGTTTAAAGTTTACTTTAAGCTTGGTACAGTTCACCTTTGTCGCAGTGTGATAAGGAGTATTGAAACTGCACGTATATTTGATTTTGAGGAATTCCCTACGAGAGATAAGGTTACCTATATGTATTATACAGGCCGTCTAGAGGTTTTCAATGAAAACTTTCCTGCTGCTGATGATAAATTGTCCTATGCCTTGAAGCATTGCAACCCTCGGAAGGAAGCAAATATAAGGATGATATTGAAATATTTGATACCTGTCAAGCTTTCAATTGGCATCATACCAACCGATTGGCTTCTGCAAAAGTATAACTTGGTGGAGTATAGCAATGTTGTGCAAGCTCTAAGAAGAGGTGACCTCCGACTTCTTCGGCATGCTCTTCAAGAGCATGAAGACAGGTTCTTGAGATCTGGCGTATATCTCGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTGTTGAAAAAAATTTACATTATCCAAAAGCAAAAGGACCCGAGCAAAGCTCACCAGCTGAAGTTGGAAGTAATTGTCAAAGCATTGAAATGGCTTGAAATGGACATTGATGTGGATGAGGTGGAGTGCATAATGGCAATACTAATATACAAAAGTCTGGTAAAGGGATACTTTGCACACAAGAGTAAAGTTGTGGTTTTAAGCAAGCAAGATCCTTTCCCCAAGTTAAATGGAAAGCCTGTCAATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

413

Amino Acids

47.66

Weight (kDa)

9.37

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 304 - 399 6.1e-07 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 55, 339
AclI AACGTT 1 cut(s) 159
AclWI GGATC 1 cut(s) 1196
AcsI RAATTY 3 cut(s) 219, 626, 1002
AcuI CTGAAG 2 cut(s) 959, 1070
AcyI GRCGYC 2 cut(s) 66, 150
AfaI GTAC 3 cut(s) 8, 281, 562
AfiI CCNNNNNNNGG 2 cut(s) 676, 748
AflIII ACRYGT 1 cut(s) 505
AjnI CCWGG 3 cut(s) 78, 165, 282
AlwI GGATC 1 cut(s) 1196
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 2 cut(s) 496, 667
ApeKI GCWGC 2 cut(s) 299, 701
ApoI RAATTY 3 cut(s) 219, 626, 1002
Asp700I GAANNNNTTC 2 cut(s) 56, 693
AspLEI GCGC 2 cut(s) 28, 102
AspS9I GGNCC 2 cut(s) 497, 1027
AsuHPI GGTGA 4 cut(s) 227, 560, 896, 1034
AsuII TTCGAA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 1030
AvaII GGWCC 1 cut(s) 1027
BbsI GAAGAC 1 cut(s) 930
BbvI GCAGC 2 cut(s) 286, 688
BccI CCATC 1 cut(s) 361
BceAI ACGGC 3 cut(s) 53, 100, 654
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 3 cut(s) 80, 167, 284
BciVI GTATCC 1 cut(s) 1151
BfaI CTAG 4 cut(s) 389, 674, 959, 968
BfoI RGCGCY 1 cut(s) 103
BfuI GTATCC 1 cut(s) 1151
BglII AGATCT 1 cut(s) 938
BisI GCNGC 2 cut(s) 300, 702
BlsI GCNGC 2 cut(s) 301, 703
Bme1390I CCNGG 3 cut(s) 80, 167, 284
Bme18I GGWCC 1 cut(s) 1027
BmeT110I CYCGRG 1 cut(s) 1030
BmgT120I GGNCC 2 cut(s) 497, 1027
BmiI GGNNCC 1 cut(s) 1029
BmrFI CCNGG 3 cut(s) 80, 167, 284
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 816
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 930
BplI GAGNNNNNCTC 4 cut(s) 873, 905, 1024, 1056
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 3 cut(s) 31, 80, 955
BsaAI YACGTR 2 cut(s) 523, 608
BsaHI GRCGYC 2 cut(s) 66, 150
BsaJI CCNNGG 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 676, 748
Bse1I ACTGG 2 cut(s) 335, 532
Bse3DI GCAATG 2 cut(s) 733, 865
BseBI CCWGG 3 cut(s) 80, 167, 284
BseDI CCNNGG 1 cut(s) 743
BseGI GGATG 2 cut(s) 771, 1111
BseLI CCNNNNNNNGG 2 cut(s) 676, 748
BseMI GCAATG 2 cut(s) 733, 865
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 335, 532
BseRI GAGGAG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 286, 688
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 2 cut(s) 498, 669
BsiHKCI CYCGRG 1 cut(s) 1030
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 676, 748
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 2 cut(s) 498, 669
BsoBI CYCGRG 1 cut(s) 1030
Bsp119I TTCGAA 1 cut(s) 74
Bsp143I GATC 2 cut(s) 938, 1201
BspACI CCGC 2 cut(s) 55, 339
BspANI GGCC 2 cut(s) 498, 669
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 1029
BspPI GGATC 1 cut(s) 1196
BspQI GCTCTTC 1 cut(s) 915
BspT104I TTCGAA 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 733, 865
BsrI ACTGG 2 cut(s) 335, 532
BssECI CCNNGG 1 cut(s) 743
BssMI GATC 2 cut(s) 938, 1201
BssNI GRCGYC 2 cut(s) 66, 150
Bst2UI CCWGG 3 cut(s) 80, 167, 284
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 2 cut(s) 874, 915
BstACI GRCGYC 2 cut(s) 66, 150
BstBAI YACGTR 2 cut(s) 523, 608
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 5 cut(s) 354, 454, 870, 906, 1196
BstDEI CTNAG 2 cut(s) 393, 875
BstEII GGTNACC 2 cut(s) 646, 884
BstF5I GGATG 2 cut(s) 771, 1111
BstFNI CGCG 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 28, 102
BstKTI GATC 2 cut(s) 941, 1204
BstMBI GATC 2 cut(s) 938, 1201
BstMWI GCNNNNNNNGC 3 cut(s) 305, 353, 398
BstNI CCWGG 3 cut(s) 80, 167, 284
BstNSI RCATGY 1 cut(s) 908
BstPI GGTNACC 2 cut(s) 646, 884
BstSCI CCNGG 3 cut(s) 78, 165, 282
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 286, 688
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 2 cut(s) 938, 1201
BstXI CCANNNNNNTGG 1 cut(s) 822
BstYI RGATCY 2 cut(s) 938, 1201
BsuI GTATCC 1 cut(s) 1151
BsuRI GGCC 2 cut(s) 498, 669
BtsCI GGATG 2 cut(s) 771, 1111
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 5 cut(s) 354, 454, 870, 906, 1196
CfoI GCGC 2 cut(s) 28, 102
Cfr13I GGNCC 2 cut(s) 497, 1027
CseI GACGC 3 cut(s) 74, 158, 179
Csp6I GTAC 3 cut(s) 7, 280, 561
CviAII CATG 3 cut(s) 16, 905, 920
CviQI GTAC 3 cut(s) 7, 280, 561
DdeI CTNAG 2 cut(s) 393, 875
DpnI GATC 2 cut(s) 940, 1203
DpnII GATC 2 cut(s) 938, 1201
DraI TTTAAA 1 cut(s) 541
Eam1104I CTCTTC 2 cut(s) 874, 915
EarI CTCTTC 2 cut(s) 874, 915
Eco47I GGWCC 1 cut(s) 1027
Eco57I CTGAAG 2 cut(s) 959, 1070
Eco88I CYCGRG 1 cut(s) 1030
Eco91I GGTNACC 2 cut(s) 646, 884
EcoO109I RGGNCCY 1 cut(s) 1027
EcoO65I GGTNACC 2 cut(s) 646, 884
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 3 cut(s) 78, 165, 282
FaeI CATG 3 cut(s) 19, 908, 923
FalI AAGNNNNNCTT 4 cut(s) 827, 859, 1145, 1177
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 15, 904, 919
Fnu4HI GCNGC 2 cut(s) 300, 702
FokI GGATG 2 cut(s) 778, 1118
Fsp4HI GCNGC 2 cut(s) 300, 702
FspBI CTAG 4 cut(s) 389, 674, 959, 968
GlaI GCGC 2 cut(s) 27, 101
GluI GCNGC 2 cut(s) 300, 702
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 498, 669
HgaI GACGC 3 cut(s) 74, 158, 179
HhaI GCGC 2 cut(s) 28, 102
Hin1I GRCGYC 2 cut(s) 66, 150
Hin1II CATG 3 cut(s) 19, 908, 923
Hin6I GCGC 2 cut(s) 26, 100
HinP1I GCGC 2 cut(s) 26, 100
HindIII AAGCTT 3 cut(s) 265, 554, 794
HinfI GANTC 3 cut(s) 36, 258, 275
HphI GGTGA 4 cut(s) 227, 560, 896, 1034
Hpy166II GTNNAC 2 cut(s) 547, 568
Hpy188I TCNGA 6 cut(s) 249, 257, 263, 747, 893, 987
Hpy188III TCNNGA 4 cut(s) 317, 674, 914, 934
Hpy8I GTNNAC 2 cut(s) 547, 568
Hpy99I CGWCG 3 cut(s) 68, 152, 421
HpyAV CCTTC 3 cut(s) 113, 439, 742
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 4 cut(s) 159, 505, 522, 607
HpyCH4V TGCA 8 cut(s) 302, 352, 605, 738, 832, 868, 1119, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 353, 398
HpyF3I CTNAG 2 cut(s) 393, 875
HpySE526I ACGT 4 cut(s) 159, 505, 522, 607
Hsp92I GRCGYC 2 cut(s) 66, 150
Hsp92II CATG 3 cut(s) 19, 908, 923
HspAI GCGC 2 cut(s) 26, 100
Kzo9I GATC 2 cut(s) 938, 1201
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 2 cut(s) 449, 512
Lsp1109I GCAGC 2 cut(s) 286, 688
LweI GCATC 1 cut(s) 816
MaeI CTAG 4 cut(s) 389, 674, 959, 968
MaeII ACGT 4 cut(s) 159, 505, 522, 607
MaeIII GTNAC 3 cut(s) 523, 646, 884
MalI GATC 2 cut(s) 940, 1203
MboI GATC 2 cut(s) 938, 1201
MboII GAAGA 5 cut(s) 45, 890, 891, 902, 935
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 938, 1201
MluCI AATT 9 cut(s) 209, 219, 410, 626, 713, 801, 1002, 1062, 1234
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 4 cut(s) 144, 241, 916, 1035
MroXI GAANNNNTTC 2 cut(s) 56, 693
MseI TTAA 5 cut(s) 186, 540, 552, 1190, 1217
MslI CAYNNNNRTG 2 cut(s) 1078, 1100
MspA1I CMGCKG 1 cut(s) 1048
MspR9I CCNGG 3 cut(s) 80, 167, 284
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 3 cut(s) 80, 167, 284
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 305, 353, 398
NdeII GATC 2 cut(s) 938, 1201
NlaIII CATG 3 cut(s) 19, 908, 923
NlaIV GGNNCC 1 cut(s) 1029
NmuCI GTSAC 2 cut(s) 523, 884
NspI RCATGY 1 cut(s) 908
NspV TTCGAA 1 cut(s) 74
PaeI GCATGC 1 cut(s) 908
PciSI GCTCTTC 1 cut(s) 915
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 267
PdmI GAANNNNTTC 2 cut(s) 56, 693
PfeI GAWTC 2 cut(s) 36, 275
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 2 cut(s) 301, 703
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 2 cut(s) 523, 608
PpuMI RGGWCCY 1 cut(s) 1027
Psp1406I AACGTT 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 3 cut(s) 78, 165, 282
PspEI GGTNACC 2 cut(s) 646, 884
PspGI CCWGG 3 cut(s) 78, 165, 282
PspN4I GGNNCC 1 cut(s) 1029
PspPI GGNCC 2 cut(s) 497, 1027
PspPPI RGGWCCY 1 cut(s) 1027
PsrI GAACNNNNNNTAC 2 cut(s) 465, 497
PsuI RGATCY 2 cut(s) 938, 1201
PvuII CAGCTG 1 cut(s) 1048
RsaI GTAC 3 cut(s) 8, 281, 562
RsaNI GTAC 3 cut(s) 7, 280, 561
RseI CAYNNNNRTG 2 cut(s) 1078, 1100
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 5 cut(s) 186, 540, 552, 1190, 1217
SatI GCNGC 2 cut(s) 300, 702
Sau3AI GATC 2 cut(s) 938, 1201
Sau96I GGNCC 2 cut(s) 497, 1027
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 3 cut(s) 80, 167, 284
SfaNI GCATC 1 cut(s) 816
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 1 cut(s) 1027
SmiMI CAYNNNNRTG 2 cut(s) 1078, 1100
SmlI CTYRAG 3 cut(s) 10, 95, 934
SmoI CTYRAG 3 cut(s) 10, 95, 934
SphI GCATGC 1 cut(s) 908
Sse9I AATT 9 cut(s) 209, 219, 410, 626, 713, 801, 1002, 1062, 1234
SsiI CCGC 2 cut(s) 55, 339
SspI AATATT 1 cut(s) 779
SspMI CTAG 4 cut(s) 389, 674, 959, 968
StyD4I CCNGG 3 cut(s) 78, 165, 282
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 4 cut(s) 162, 508, 525, 610
TaqI TCGA 1 cut(s) 74
TasI AATT 9 cut(s) 209, 219, 410, 626, 713, 801, 1002, 1062, 1234
TfiI GAWTC 2 cut(s) 36, 275
Tru1I TTAA 5 cut(s) 186, 540, 552, 1190, 1217
Tru9I TTAA 5 cut(s) 186, 540, 552, 1190, 1217
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 2 cut(s) 523, 884
TseI GCWGC 2 cut(s) 299, 701
Tsp45I GTSAC 2 cut(s) 523, 884
TspDTI ATGAA 5 cut(s) 218, 390, 482, 702, 936
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 1027
XapI RAATTY 3 cut(s) 219, 626, 1002
XbaI TCTAGA 1 cut(s) 673
XceI RCATGY 1 cut(s) 908
XmnI GAANNNNTTC 2 cut(s) 56, 693
XspI CTAG 4 cut(s) 389, 674, 959, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.