Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

10990765 .. 10993354

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGGAAGAGGAGCGCTCTGGTAGTCTTGTCATCGGACGACGAAGAGACCGATCGTTCACTGAGATCCAATCGTAGCCGTACAAGGTCGTCGTCGGCGTCGAGATTGATCTCTTCGGCTCCGGCGAAGAACCCTGGGCGAGCGAAGAGGGCTCGGGTTTCGGGCTCTCGCTCTAGCTTGGGCTCAGTGTCCACTAATTGGGATGAGGTCAGATTGTCCTTTGGAGATTTTGATGAAGTGTTCAGTGGTGGTTCCAAGGTAGCTGCTGGTTCTGGAAGGAGCAATGTGAAGGAGTTATGGGTTGAGAAATACAAACCCCATTCGCTTGAGGAGCTTGCTGTTCACAAGAAAAAGGTCCAAGAAGTTAAGGGGTGGTTTGAAGAACGATTGACAGATTCAAAGGGTAAATCTAGTAATCACGCTCTTGTCATCACTGGGCAAGCTGGAGTTGGAAAATCTGCAACTATTCATGTGATTGCATCTCAGCTTGCTGCTACATTGTGTGAATGGAACACGCCAACTCCAATAGTTTGGCAAGAACATTTATATAACTCTAGTACAGGAGTACAATACATGTCAAAGTTGGAGGAATTTGAAAATTTTGTGGAGAGAGTACGGAAGTACGGTTTGATTCCATCATCCCTTAGTGAGGGTTCAAAATCATCAATCATACTCTTAATTGACGACCTTCCAGTGACAAATGGTAAAGTTGCTTTTCAAAGACTTCAAAACTGTTTGCGCCTTCTTGTGCAATCAACTCGTACACCAACTGCTATTTTGATCACCGACCATGGTAAAGCTGATTCAGAAGATCACACTGCTGGATACTTGGATGAACTTCAGTTGTCTCTTCAAAGTGCGGGGGCTTGTAAGGTCTCCTTCAATCCTATTACATCTAATTCCATCAAAAAAGTACTGTCTAGAATATGTAAAGAAGAGCAGTGTAATGTGACTGCTGAACAGGTTGATCTAATTGCAAAAGCAAGTGGAGGTATGCTAAAGGGAAACAAGCACCATGGTCTGCTAAAGGGAAATCAGATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

348

Amino Acids

38.03

Weight (kDa)

9.32

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	97 - 264	3e-25	Rad17 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	198
AciI	CCGC	1 cut(s)	860
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	590, 598
AcuI	CTGAAG	1 cut(s)	824
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	7 cut(s)	82, 559, 567, 615, 623, 763, 915
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	198, 649
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	8 cut(s)	380, 399, 596, 657, 719, 728, 854, 883
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	6 cut(s)	177, 263, 334, 443, 487, 800
AluI	AGCT	6 cut(s)	177, 263, 334, 443, 487, 800
Alw26I	GTCTC	3 cut(s)	41, 852, 880
AlwI	GGATC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	153
Aor51HI	AGCGCT	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	263, 491
ApoI	RAATTY	2 cut(s)	590, 598
AspLEI	GCGC	2 cut(s)	17, 741
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	775
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	3 cut(s)	154, 167, 185
BbvI	GCAGC	2 cut(s)	250, 478
BccI	CCATC	2 cut(s)	643, 911
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	3 cut(s)	41, 852, 880
BfaI	CTAG	4 cut(s)	174, 411, 555, 921
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	2 cut(s)	264, 492
BlsI	GCNGC	2 cut(s)	265, 493
BmcAI	AGTACT	1 cut(s)	915
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	120, 253
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	444
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	41, 880
BsaJI	CCNNGG	5 cut(s)	133, 134, 255, 790, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 649
Bse1I	ACTGG	2 cut(s)	439, 692
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	5 cut(s)	133, 134, 255, 790, 1015
BseGI	GGATG	3 cut(s)	208, 638, 838
BseLI	CCNNNNNNNGG	2 cut(s)	198, 649
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	53, 198, 497
BseNI	ACTGG	2 cut(s)	439, 692
BseRI	GAGGAG	2 cut(s)	25, 344
BseXI	GCAGC	2 cut(s)	250, 478
Bsh1285I	CGRYCG	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	198, 649
BsmAI	GTCTC	3 cut(s)	41, 852, 880
Bso31I	GGTCTC	2 cut(s)	41, 880
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	154, 167, 185
Bsp143I	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
Bsp19I	CCATGG	2 cut(s)	790, 1015
BspACI	CCGC	1 cut(s)	860
BspCNI	CTCAG	3 cut(s)	54, 197, 496
BspLI	GGNNCC	2 cut(s)	120, 253
BspPI	GGATC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	930
BspTNI	GGTCTC	2 cut(s)	41, 880
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	439, 692
BssECI	CCNNGG	5 cut(s)	133, 134, 255, 790, 1015
BssMI	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	3 cut(s)	255, 790, 1015
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	626, 734, 918
Bst6I	CTCTTC	6 cut(s)	2, 39, 118, 140, 855, 930
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	141, 336, 441, 489
BstDEI	CTNAG	4 cut(s)	62, 184, 483, 644
BstDSI	CCRYGG	2 cut(s)	790, 1015
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	208, 638, 838
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 741
BstKTI	GATC	6 cut(s)	55, 68, 111, 783, 814, 970
BstMAI	GTCTC	3 cut(s)	41, 852, 880
BstMBI	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 331
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	250, 478
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	818
BtgI	CCRYGG	2 cut(s)	790, 1015
BtsCI	GGATG	3 cut(s)	208, 638, 838
BtsI	GCAGTG	2 cut(s)	816, 947
BtsIMutI	CAGTG	7 cut(s)	59, 192, 250, 432, 699, 816, 947
Cac8I	GCNNGC	4 cut(s)	141, 336, 441, 489
CfoI	GCGC	2 cut(s)	17, 741
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	7 cut(s)	81, 558, 566, 614, 622, 762, 914
CviAII	CATG	4 cut(s)	470, 574, 791, 1016
CviQI	GTAC	7 cut(s)	81, 558, 566, 614, 622, 762, 914
DdeI	CTNAG	4 cut(s)	62, 184, 483, 644
DpnI	GATC	6 cut(s)	54, 67, 110, 782, 813, 969
DpnII	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
Eam1104I	CTCTTC	6 cut(s)	2, 39, 118, 140, 855, 930
EarI	CTCTTC	6 cut(s)	2, 39, 118, 140, 855, 930
Eco130I	CCWWGG	3 cut(s)	255, 790, 1015
Eco24I	GRGCYC	3 cut(s)	154, 167, 185
Eco31I	GGTCTC	2 cut(s)	41, 880
Eco47I	GGWCC	1 cut(s)	355
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	824
Eco88I	CYCGRG	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	255, 790, 1015
EcoT38I	GRGCYC	3 cut(s)	154, 167, 185
ErhI	CCWWGG	3 cut(s)	255, 790, 1015
FaeI	CATG	4 cut(s)	473, 577, 794, 1019
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	4 cut(s)	469, 573, 790, 1015
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	2 cut(s)	264, 492
FokI	GGATG	3 cut(s)	215, 625, 845
FriOI	GRGCYC	3 cut(s)	154, 167, 185
Fsp4HI	GCNGC	2 cut(s)	264, 492
FspBI	CTAG	4 cut(s)	174, 411, 555, 921
GlaI	GCGC	2 cut(s)	16, 740
GluI	GCNGC	2 cut(s)	264, 492
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	2 cut(s)	17, 741
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	473, 577, 794, 1019
Hin6I	GCGC	2 cut(s)	15, 739
HinP1I	GCGC	2 cut(s)	15, 739
HinfI	GANTC	3 cut(s)	395, 631, 803
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	4 cut(s)	59, 192, 343, 764
Hpy188I	TCNGA	4 cut(s)	37, 212, 808, 1038
Hpy188III	TCNNGA	3 cut(s)	102, 273, 921
Hpy8I	GTNNAC	4 cut(s)	59, 192, 343, 764
Hpy99I	CGWCG	4 cut(s)	44, 94, 97, 103
HpyAV	CCTTC	5 cut(s)	270, 283, 698, 752, 889
HpyCH4III	ACNGT	3 cut(s)	626, 734, 918
HpyCH4V	TGCA	4 cut(s)	461, 479, 751, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 331
HpyF3I	CTNAG	4 cut(s)	62, 184, 483, 644
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	473, 577, 794, 1019
HspAI	GCGC	2 cut(s)	15, 739
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	4 cut(s)	12, 124, 279, 331
Lsp1109I	GCAGC	2 cut(s)	250, 478
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	4 cut(s)	174, 411, 555, 921
MaeIII	GTNAC	2 cut(s)	694, 949
MalI	GATC	6 cut(s)	54, 67, 110, 782, 813, 969
MboI	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
MboII	GAAGA	9 cut(s)	19, 56, 105, 139, 157, 392, 821, 842, 947
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	154, 167, 185
MluCI	AATT	6 cut(s)	196, 590, 598, 678, 898, 972
MmeI	TCCRAC	2 cut(s)	430, 564
MnlI	CCTC	7 cut(s)	3, 141, 199, 322, 580, 643, 983
MseI	TTAA	2 cut(s)	366, 677
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	149, 331
NcoI	CCATGG	2 cut(s)	790, 1015
NdeII	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
NlaIII	CATG	4 cut(s)	473, 577, 794, 1019
NlaIV	GGNNCC	2 cut(s)	120, 253
NmuCI	GTSAC	2 cut(s)	694, 949
NspI	RCATGY	1 cut(s)	577
PasI	CCCWGGG	1 cut(s)	134
PciI	ACATGT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 95, 98, 122
PfeI	GAWTC	3 cut(s)	395, 631, 803
PflMI	CCANNNNNTGG	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	265, 493
Ple19I	CGATCG	1 cut(s)	55
PscI	ACATGT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	120, 253
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	7 cut(s)	82, 559, 567, 615, 623, 763, 915
RsaNI	GTAC	7 cut(s)	81, 558, 566, 614, 622, 762, 914
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	2 cut(s)	366, 677
SatI	GCNGC	2 cut(s)	264, 492
Sau3AI	GATC	6 cut(s)	52, 65, 108, 780, 811, 967
Sau96I	GGNCC	1 cut(s)	355
ScaI	AGTACT	1 cut(s)	915
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	3 cut(s)	154, 167, 185
SfaNI	GCATC	1 cut(s)	488
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	6 cut(s)	196, 590, 598, 678, 898, 972
SsiI	CCGC	1 cut(s)	860
SspMI	CTAG	4 cut(s)	174, 411, 555, 921
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	3 cut(s)	255, 790, 1015
TaaI	ACNGT	3 cut(s)	626, 734, 918
TaqI	TCGA	1 cut(s)	101
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	6 cut(s)	196, 590, 598, 678, 898, 972
TatI	WGTACW	3 cut(s)	557, 565, 913
TfiI	GAWTC	3 cut(s)	395, 631, 803
Tru1I	TTAA	2 cut(s)	366, 677
Tru9I	TTAA	2 cut(s)	366, 677
TscAI	CASTG	7 cut(s)	66, 192, 250, 439, 699, 823, 947
TseFI	GTSAC	2 cut(s)	694, 949
TseI	GCWGC	2 cut(s)	263, 491
Tsp45I	GTSAC	2 cut(s)	694, 949
TspDTI	ATGAA	3 cut(s)	249, 458, 849
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	7 cut(s)	66, 192, 250, 439, 699, 823, 947
Van91I	CCANNNNNTGG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	2 cut(s)	590, 598
XbaI	TCTAGA	1 cut(s)	920
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	4 cut(s)	174, 411, 555, 921
ZrmI	AGTACT	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.