Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335887.1

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 726

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

atggagctgcatttcatgtacgagaaggtttgtctagactaccactgaaaatggatgctccggagaagattctctgtcaagcacacggacaagccaggcctattgctgattttctacatgaaaatgttctagatttcgtgagtgaggaggcaatggatgatgcctggtcagttgcttcatatttaagtgatgctgatttgcttcttgctactttccgcggaatgctaagtagacagtatgaggcagagaatgttctacagtcagccggtgcttcagttgccgttcgtggtgtgctatttggaaattttcatccattgccgtccaggtggcatgctgttcggcggcccaagctctggcaggttgagaagtcatcattttacaacaaggttattttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

6.57

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	3 cut(s)	216, 218, 342
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	353
AjnI	CCWGG	3 cut(s)	94, 163, 322
AluBI	AGCT	2 cut(s)	7, 351
AluI	AGCT	2 cut(s)	7, 351
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	2 cut(s)	97, 343
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	344
BceAI	ACGGC	2 cut(s)	265, 303
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	3 cut(s)	96, 165, 324
BfaI	CTAG	2 cut(s)	35, 130
BfmI	CTRYAG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	8, 343
BlsI	GCNGC	2 cut(s)	9, 344
Bme1390I	CCNGG	3 cut(s)	96, 165, 324
BmgT120I	GGNCC	1 cut(s)	344
BmrFI	CCNGG	3 cut(s)	96, 165, 324
BmsI	GCATC	3 cut(s)	45, 150, 180
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	158, 313
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	96, 165, 324
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	60, 162, 309
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	2 cut(s)	158, 313
BseRI	GAGGAG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	99, 345
BsiSI	CCGG	2 cut(s)	61, 266
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	99, 345
Bsp13I	TCCGGA	1 cut(s)	60
BspACI	CCGC	3 cut(s)	216, 218, 342
BspANI	GGCC	2 cut(s)	99, 345
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	218
BspMI	ACCTGC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	158, 313
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	216
Bst2UI	CCWGG	3 cut(s)	96, 165, 324
Bst4CI	ACNGT	2 cut(s)	236, 260
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	60, 162, 309
BstFNI	CGCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 348
BstNI	CCWGG	3 cut(s)	96, 165, 324
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	94, 163, 322
BstSFI	CTRYAG	1 cut(s)	256
BstUI	CGCG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	99, 345
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	60, 162, 309
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	344
Cfr42I	CCGCGG	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	16, 118, 331
CviJI	RGCY	6 cut(s)	7, 94, 99, 265, 345, 351
CviKI_1	RGCY	6 cut(s)	7, 94, 99, 265, 345, 351
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	226
Eco147I	AGGCCT	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	94, 163, 322
FaeI	CATG	3 cut(s)	19, 121, 334
FaiI	YATR	5 cut(s)	17, 119, 180, 239, 332
FatI	CATG	3 cut(s)	15, 117, 330
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	8, 343
FokI	GGATG	3 cut(s)	67, 169, 296
Fsp4HI	GCNGC	2 cut(s)	8, 343
FspBI	CTAG	2 cut(s)	35, 130
GluI	GCNGC	2 cut(s)	8, 343
HaeIII	GGCC	2 cut(s)	99, 345
HapII	CCGG	2 cut(s)	61, 266
Hin1II	CATG	3 cut(s)	19, 121, 334
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	61, 266
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	35, 61, 130, 138
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	236, 260
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 348
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	19, 121, 334
Kpn2I	TCCGGA	1 cut(s)	60
KspI	CCGCGG	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	4, 63
LweI	GCATC	3 cut(s)	45, 150, 180
MaeI	CTAG	2 cut(s)	35, 130
MboII	GAAGA	1 cut(s)	78
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	3 cut(s)	138, 141, 234
MroI	TCCGGA	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	184, 396
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	61, 266
MspR9I	CCNGG	3 cut(s)	96, 165, 324
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	3 cut(s)	96, 165, 324
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	277, 348
NlaIII	CATG	3 cut(s)	19, 121, 334
NspI	RCATGY	1 cut(s)	334
PaeI	GCATGC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	99
PctI	GAATGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	9, 344
Psp6I	CCWGG	3 cut(s)	94, 163, 322
PspGI	CCWGG	3 cut(s)	94, 163, 322
PspPI	GGNCC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	184, 396
SatI	GCNGC	2 cut(s)	8, 343
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	96, 165, 324
SetI	ASST	6 cut(s)	9, 30, 328, 353, 362, 389
SfaNI	GCATC	3 cut(s)	45, 150, 180
SfcI	CTRYAG	1 cut(s)	256
Sfr303I	CCGCGG	1 cut(s)	219
SgrBI	CCGCGG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	303
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	3 cut(s)	216, 218, 342
SspMI	CTAG	2 cut(s)	35, 130
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	94, 163, 322
TaaI	ACNGT	2 cut(s)	236, 260
TasI	AATT	1 cut(s)	303
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	184, 396
Tru9I	TTAA	2 cut(s)	184, 396
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	4, 134, 167, 298
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	303
XbaI	TCTAGA	2 cut(s)	34, 129
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	35, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.