Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

10993462 .. 10994989

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAATTGGATGGAGCTGCATTTCATGTGCGAGAAGGTTTGTCTAGACTACCACTGAAAATGGATGCTCCGGAAAAGATTCTCTGTCAAGCACACGGACAAGCCAGGCCTATTGCTGATTTTCTACATGAAAATGTTCTAGATTTCGTGAGTGAGGAGGCAATGGATGATGCCTGGTCGGTTGCTTCATATTTAAGTGATGCTGATTTGCTTCTTACTACTTTCCGCGGAATGCTAAGTAGACAGTATGAGGCCGAGAATGTTCTACAGTCAGCTGGTGCTTCAGTTGCCGTTCGTGGTGTGCTATTTGGAAATTTTCATCCATTGCCGTCCAGGTGGCATGCTGTTCGGCGGCCCAAGCTCTGGCAGGTTGAGAAGTCATCATTTTACAACAAGAAGGAGATGGTAAATCGGAGATTCAGTGCTTATAGTGGTTCTTGTTCATCTGATTTGACGGCTATAGCTACTGAGTACTCGCCTGTGTATAAATGGCTTGGATTTAGGGCACAGGGACGTCTTGAAGACAATGTTGAAAGGATGAGTTTGGGTGATCAAGAAAGTGAAATTGATGACGATATAGAAGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

196

Amino Acids

22.24

Weight (kDa)

4.97

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	226, 228, 352
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	521, 533
AjnI	CCWGG	3 cut(s)	104, 173, 332
AluBI	AGCT	4 cut(s)	17, 275, 361, 464
AluI	AGCT	4 cut(s)	17, 275, 361, 464
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	3 cut(s)	107, 252, 353
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	2 cut(s)	78, 135
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	5, 397
BceAI	ACGGC	3 cut(s)	275, 313, 471
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	3 cut(s)	106, 175, 334
BclI	TGATCA	1 cut(s)	550
BfaI	CTAG	2 cut(s)	45, 140
BfmI	CTRYAG	2 cut(s)	266, 459
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	18, 353
BlsI	GCNGC	2 cut(s)	19, 354
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	3 cut(s)	106, 175, 334
BmgT120I	GGNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	106, 175, 334
BmsI	GCATC	3 cut(s)	55, 160, 190
BpiI	GAAGAC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse3DI	GCAATG	2 cut(s)	168, 323
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	3 cut(s)	106, 175, 334
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	5 cut(s)	16, 70, 172, 319, 543
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	2 cut(s)	168, 323
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	109, 254, 355
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	3 cut(s)	109, 254, 355
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	3 cut(s)	226, 228, 352
BspANI	GGCC	3 cut(s)	109, 254, 355
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	168, 323
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	550
BssNI	GRCGYC	1 cut(s)	514
Bst2UI	CCWGG	3 cut(s)	106, 175, 334
Bst4CI	ACNGT	2 cut(s)	246, 270
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	236, 468
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	16, 70, 172, 319, 543
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 358
BstNI	CCWGG	3 cut(s)	106, 175, 334
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	3 cut(s)	104, 173, 332
BstSFI	CTRYAG	2 cut(s)	266, 459
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	109, 254, 355
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	16, 70, 172, 319, 543
BtsIMutI	CAGTG	2 cut(s)	53, 427
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	354
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	3 cut(s)	26, 128, 341
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	236, 468
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
Eco147I	AGGCCT	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	3 cut(s)	104, 173, 332
FaeI	CATG	3 cut(s)	29, 131, 344
FaiI	YATR	9 cut(s)	27, 129, 190, 249, 342, 429, 461, 486, 578
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	3 cut(s)	25, 127, 340
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	18, 353
FokI	GGATG	5 cut(s)	23, 77, 179, 306, 550
Fsp4HI	GCNGC	2 cut(s)	18, 353
FspBI	CTAG	2 cut(s)	45, 140
GluI	GCNGC	2 cut(s)	18, 353
HaeIII	GGCC	3 cut(s)	109, 254, 355
HapII	CCGG	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	29, 131, 344
HinfI	GANTC	2 cut(s)	79, 417
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	414, 448
Hpy188III	TCNNGA	6 cut(s)	45, 71, 140, 148, 518, 554
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	29, 391
HpyCH4III	ACNGT	2 cut(s)	246, 270
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 358
HpyF3I	CTNAG	2 cut(s)	236, 468
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	29, 131, 344
Kpn2I	TCCGGA	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	550
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	2 cut(s)	14, 73
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	3 cut(s)	55, 160, 190
MaeI	CTAG	2 cut(s)	45, 140
MaeII	ACGT	1 cut(s)	514
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	3 cut(s)	5, 313, 564
MnlI	CCTC	3 cut(s)	148, 151, 244
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	2 cut(s)	78, 135
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	228, 275
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	106, 175, 334
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	3 cut(s)	106, 175, 334
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	287, 358
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	3 cut(s)	29, 131, 344
NmeAIII	GCCGAG	1 cut(s)	280
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	109
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	78, 135
PfeI	GAWTC	2 cut(s)	79, 417
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	19, 354
Psp6I	CCWGG	3 cut(s)	104, 173, 332
PspGI	CCWGG	3 cut(s)	104, 173, 332
PspPI	GGNCC	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	132
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	18, 353
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	106, 175, 334
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	8 cut(s)	19, 40, 277, 338, 363, 372, 466, 517
SfaNI	GCATC	3 cut(s)	55, 160, 190
SfcI	CTRYAG	2 cut(s)	266, 459
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	3 cut(s)	5, 313, 564
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	3 cut(s)	226, 228, 352
SspMI	CTAG	2 cut(s)	45, 140
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	104, 173, 332
TaaI	ACNGT	2 cut(s)	246, 270
TaiI	ACGT	1 cut(s)	517
TasI	AATT	3 cut(s)	5, 313, 564
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	79, 417
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	60, 427
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	5 cut(s)	14, 144, 177, 308, 432
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	60, 427
Van91I	CCANNNNNTGG	1 cut(s)	363
XapI	RAATTY	1 cut(s)	313
XbaI	TCTAGA	2 cut(s)	44, 139
XceI	RCATGY	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	241
XmnI	GAANNNNTTC	2 cut(s)	78, 135
XspI	CTAG	2 cut(s)	45, 140
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.