Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002173

Physical Location & Seq

Genomic Coordinates Forward (+)

10966685 .. 10970903

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGGGAAGAGGAGCGCTCTGGTAGTCTTGTCATCGGACGACGAAGAGATCGATCGTTCACTGAGCTCCAATCGTGGCCGTACAAGGTCGTCGTCGGCGTCGAGATTGATCTCTTCGGCTCCGGCGAAGAACCCCGGGCGAGCGAAGAAGGCTCGGGTTTCGGGCTCTCGCTCTAGCTTGGGCTCAGTGTCCACTAATTGGGATGAGGTCAGATTGTCCTTTGGAGATTTTGATGAAGTGTTCAGTGGTGGTTCCAAGGTAGCTGCTGGTTCTGGAAGGAGCAATGTGAAGGAGTTATGGGTTGAGAAATACAAACCCCATTCGCTTGAGGAGCTTGCTGTTCACAAGAAAAAGGTCCAAGAAGTTAAGGGCTGGTTTGAAGAACGATTGACAGATTCAAAGGGTAAATCTAGTAATCACGCTCTTGTCATCACTGGGCAAGCTGGAGTTGGAAAATCTGCAACTATTCATGTGATTGCATCTCAGCTTGCTGCTACATTGTGTGAATGGAACACGCCAACTCCAATAGTTTGGCAAGAACATTTATATAACTCTAGTACAGGAGTACAATACATGTCAAAGTTGGAGGAATTTGAAAATTTTGTGGAGAGAGTACGGAAGTACGGTTTGATTCCATCATCCCTTAGTGAGGGTTCAAAATCATCAATCATACTCTTAATTGACGACCTTCCAGTGACAAATGGTAAAGTTGCTTTTCAAAGACTTCAAAAATGTTTGCGCCTTCTTGTGCAATCAACTCGTACACCAACTGCTATTTTGATCACCGACCATGGTAAAGCTGATTCAGAAGATCACACTGCTGGATACTTGGATGAACTTCAGTTGTCTCTTCAAAGTGCCGGGGCTTGTAAGGTCTCCTTCAATCCTATAACATCTAATTCCATCAAAAAAGTACTGTCTAGAATATGTAAAGAAGAGCAGTGTAATGTGACTGCTGAACAGGTTGATCTAATTGCAAAAGCAAGTGGAGGTGACATAAGAAATGCAATTACATCTTTACAGTTCTTCTTTCTGAAACCAACTCCGATGCATTCGCTTCCTTCATCGATTACTCCTCCCAGGTATGCTAAAGGGAAACAAGCACCATGGTCTGCTAAAGGGAAATCAGATATGGTAAATGCTTTGGACAATAGTGGTTCCTTACAATTTGGAAGAGATGATACACTTTCTCTATTCCATGCCCTTGGGAAGTTTCTGCATAACAAAAGAGAGACTGAAGATAGCATGGAATTGGATGGAGCTGCATTTCATGTGCGAGAAGGTTTGTCTAGACTACCACTGAAAATGGATGCTCCGGAAAAGATTCTCTGTCAAGCACACGGACAAGCCAGGCCTATTGCTGATTTTCTACATGAAAATGTTCTAGATTTCGTGAGTGAGGAGGCAATGGATGATGCCTGGTCGGTTGCTTCATATTTAAGTGATGCTGATTTGCTTCTTACTACTTTCTGCGGAATGCTAAGTAGACAGTATGAGGCCGAGAATGTTCTACAGTCAGCCGGTGCTTCAGTTGCTGTTCGTGGTGTGCTATTTGGAAATTTTCATCCATTGCCGTCCAGGTGGCATGCTGTTCGGCGGCCCAATCTCTGGCAGGTTGAGAAGTCATCATTTTACAACAAGAAGGAGATGGTAAATCGGAGATTCGGTGCTTATAGTGGTACTTGTTCATCTGATTTGACTGTTATAGCTACTGAGTACTCGCCCGTGTATAAATGGCTTGGATTTAGGGCACAGGGAGGTCTTGAAGACAATGTTGAAAGGATGAGTTTGGGTGACCAAGAAAGTGAAATTGATGACGATATAGAAGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006282 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031347 GO:0031570 GO:0031974 GO:0031981 GO:0033314 GO:0033554 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 map04111 map04113

Pfam Domains

Protein Families

Myb_DNA-bind_3 Rad17

Protein Analysis

611

Amino Acids

67.38

Weight (kDa)

6.59

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	97 - 264	2.3e-24	Rad17 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66130 AT5G66130
fragaria_vesca	FvH4_1g11470 FvH4_1g11471
malus_domestica	MD15G1242700.v1.1
prunus_persica	Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171400_v2.0.a1 Prupe.7G171500_v2.0.a1
pyrus_communis	pycom15g21390
rosa_chinensis	RchiOBHm_Chr2g0099051 RchiOBHm_Chr2g0099061
rosa_laevigata	RLG00000016842
rosa_multiflora	Rmu_co8335887.1_g000001 Rmu_sc0000577.1_g000020 Rmu_sc0012098.1_g000008 Rmu_sc0015712.1_g000001 Rmu_sc0025811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143470
rosa_rugosa	Rorug02G0076000 Rorug02G0076100 Rorug02G0076100 Rorug02G0076200 Rorug02G0076300 Rorug02G0076400
rosa_samantha	Rh2AG125300 Rh2AG125400 Rh2BG128500 Rh2BG128600 Rh2BG128700 Rh2CG129500 Rh2CG129600 Rh2CG129700 Rh2DG129800 Rh2DG129900
rosa_wichuraiana	Rw2G009650 Rw2G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1603
AccB7I	CCANNNNNTGG	2 cut(s)	198, 1608
AccI	GTMKAC	1 cut(s)	1486
AccIII	TCCGGA	1 cut(s)	1315
AciI	CCGC	2 cut(s)	1473, 1597
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	3 cut(s)	590, 598, 1558
AcuI	CTGAAG	3 cut(s)	824, 1257, 1512
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	9 cut(s)	82, 559, 567, 615, 623, 763, 915, 1681, 1718
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
AflIII	ACRYGT	1 cut(s)	573
AjnI	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
AluBI	AGCT	9 cut(s)	66, 177, 263, 334, 443, 487, 800, 1262, 1709
AluI	AGCT	9 cut(s)	66, 177, 263, 334, 443, 487, 800, 1262, 1709
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	852, 880, 1226
AlwNI	CAGNNNCTG	1 cut(s)	1535
Ama87I	CYCGRG	2 cut(s)	134, 153
Aor13HI	TCCGGA	1 cut(s)	1315
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	4 cut(s)	76, 1352, 1497, 1598
ApeKI	GCWGC	3 cut(s)	263, 491, 1262
ApoI	RAATTY	3 cut(s)	590, 598, 1558
Asp700I	GAANNNNTTC	2 cut(s)	1323, 1380
AspLEI	GCGC	2 cut(s)	17, 741
AspS9I	GGNCC	2 cut(s)	355, 1599
AsuC2I	CCSGG	3 cut(s)	135, 136, 862
AsuHPI	GGTGA	3 cut(s)	775, 1004, 1805
AvaI	CYCGRG	2 cut(s)	134, 153
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	1753
BanII	GRGCYC	3 cut(s)	68, 167, 185
BarI	GAAGNNNNNNTAC	2 cut(s)	1165, 1197
BbsI	GAAGAC	1 cut(s)	1773
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	250, 478, 1249
BccI	CCATC	4 cut(s)	643, 911, 1250, 1642
BceAI	ACGGC	2 cut(s)	63, 1558
BcgI	CGANNNNNNTGC	4 cut(s)	740, 774, 1574, 1608
BciT130I	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	3 cut(s)	135, 136, 862
BcoDI	GTCTC	3 cut(s)	852, 880, 1226
BfaI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
BfmI	CTRYAG	1 cut(s)	1511
BfoI	RGCGCY	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	1603
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	4 cut(s)	264, 492, 1263, 1598
BlsI	GCNGC	4 cut(s)	265, 493, 1264, 1599
BmcAI	AGTACT	2 cut(s)	915, 1718
Bme1390I	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	2 cut(s)	134, 153
BmgT120I	GGNCC	2 cut(s)	355, 1599
BmiI	GGNNCC	3 cut(s)	120, 253, 1159
BmrFI	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	5 cut(s)	488, 1038, 1300, 1405, 1435
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	1773
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	135, 136, 862
Bsa29I	ATCGAT	2 cut(s)	51, 1067
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	8 cut(s)	133, 134, 255, 790, 861, 1079, 1106, 1204
BsaWI	WCCGGW	1 cut(s)	1315
BsaXI	ACNNNNNCTCC	4 cut(s)	505, 535, 1651, 1681
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
Bse118I	RCCGGY	1 cut(s)	1520
Bse1I	ACTGG	2 cut(s)	439, 692
Bse3DI	GCAATG	3 cut(s)	289, 1413, 1568
BseAI	TCCGGA	1 cut(s)	1315
BseBI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
BseCI	ATCGAT	2 cut(s)	51, 1067
BseDI	CCNNGG	8 cut(s)	133, 134, 255, 790, 861, 1079, 1106, 1204
BseGI	GGATG	8 cut(s)	208, 638, 838, 1261, 1315, 1417, 1564, 1788
BseLI	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
BseMI	GCAATG	3 cut(s)	289, 1413, 1568
BseMII	CTCAG	4 cut(s)	53, 198, 497, 1704
BseNI	ACTGG	2 cut(s)	439, 692
BseRI	GAGGAG	4 cut(s)	25, 344, 1065, 1415
BseSI	GKGCMC	1 cut(s)	1753
BseXI	GCAGC	3 cut(s)	250, 478, 1249
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	78, 1354, 1499, 1600
BshVI	ATCGAT	2 cut(s)	51, 1067
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	2 cut(s)	134, 153
BsiSI	CCGG	5 cut(s)	122, 135, 861, 1316, 1521
BslI	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
BsmAI	GTCTC	3 cut(s)	852, 880, 1226
BsmI	GAATGC	2 cut(s)	1051, 1482
BsnI	GGCC	4 cut(s)	78, 1354, 1499, 1600
Bso31I	GGTCTC	1 cut(s)	880
BsoBI	CYCGRG	2 cut(s)	134, 153
Bsp1286I	GDGCHC	4 cut(s)	68, 167, 185, 1753
Bsp13I	TCCGGA	1 cut(s)	1315
Bsp143I	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
Bsp19I	CCATGG	2 cut(s)	790, 1106
BspACI	CCGC	2 cut(s)	1473, 1597
BspANI	GGCC	4 cut(s)	78, 1354, 1499, 1600
BspCNI	CTCAG	4 cut(s)	54, 197, 496, 1705
BspDI	ATCGAT	2 cut(s)	51, 1067
BspEI	TCCGGA	1 cut(s)	1315
BspLI	GGNNCC	3 cut(s)	120, 253, 1159
BspMI	ACCTGC	1 cut(s)	1603
BspQI	GCTCTTC	1 cut(s)	930
BspTNI	GGTCTC	1 cut(s)	880
BsrDI	GCAATG	3 cut(s)	289, 1413, 1568
BsrFI	RCCGGY	1 cut(s)	1520
BsrI	ACTGG	2 cut(s)	439, 692
BssAI	RCCGGY	1 cut(s)	1520
BssECI	CCNNGG	8 cut(s)	133, 134, 255, 790, 861, 1079, 1106, 1204
BssMI	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	4 cut(s)	255, 790, 1106, 1204
Bst2UI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
Bst4CI	ACNGT	6 cut(s)	626, 918, 1023, 1491, 1515, 1702
Bst6I	CTCTTC	6 cut(s)	2, 39, 118, 855, 930, 1168
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	5 cut(s)	141, 336, 441, 489, 1587
BstDEI	CTNAG	6 cut(s)	62, 184, 483, 644, 1481, 1713
BstDSI	CCRYGG	2 cut(s)	790, 1106
BstEII	GGTNACC	1 cut(s)	1793
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	8 cut(s)	208, 638, 838, 1261, 1315, 1417, 1564, 1788
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 741
BstKTI	GATC	6 cut(s)	51, 55, 111, 783, 814, 970
BstMAI	GTCTC	3 cut(s)	852, 880, 1226
BstMBI	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 331, 1532
BstNI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
BstNSI	RCATGY	2 cut(s)	577, 1589
BstPI	GGTNACC	1 cut(s)	1793
BstSCI	CCNGG	7 cut(s)	133, 134, 860, 1079, 1349, 1418, 1577
BstSFI	CTRYAG	1 cut(s)	1511
BstSLI	GKGCMC	1 cut(s)	1753
BstV1I	GCAGC	3 cut(s)	250, 478, 1249
BstV2I	GAAGAC	1 cut(s)	1773
BstXI	CCANNNNNNTGG	2 cut(s)	531, 1205
Bsu15I	ATCGAT	2 cut(s)	51, 1067
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	4 cut(s)	78, 1354, 1499, 1600
BsuTUI	ATCGAT	2 cut(s)	51, 1067
BtgI	CCRYGG	2 cut(s)	790, 1106
BtsCI	GGATG	8 cut(s)	208, 638, 838, 1261, 1315, 1417, 1564, 1788
BtsI	GCAGTG	2 cut(s)	816, 947
BtsIMutI	CAGTG	8 cut(s)	59, 192, 250, 432, 699, 816, 947, 1298
BveI	ACCTGC	1 cut(s)	1603
Cac8I	GCNNGC	5 cut(s)	141, 336, 441, 489, 1587
CaiI	CAGNNNCTG	1 cut(s)	1535
CfoI	GCGC	2 cut(s)	17, 741
Cfr10I	RCCGGY	1 cut(s)	1520
Cfr13I	GGNCC	2 cut(s)	355, 1599
Cfr9I	CCCGGG	1 cut(s)	134
ClaI	ATCGAT	2 cut(s)	51, 1067
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	9 cut(s)	81, 558, 566, 614, 622, 762, 914, 1680, 1717
CviAII	CATG	9 cut(s)	470, 574, 791, 1107, 1199, 1246, 1271, 1373, 1586
CviQI	GTAC	9 cut(s)	81, 558, 566, 614, 622, 762, 914, 1680, 1717
DdeI	CTNAG	6 cut(s)	62, 184, 483, 644, 1481, 1713
DpnI	GATC	6 cut(s)	50, 54, 110, 782, 813, 969
DpnII	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	6 cut(s)	2, 39, 118, 855, 930, 1168
EarI	CTCTTC	6 cut(s)	2, 39, 118, 855, 930, 1168
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	4 cut(s)	255, 790, 1106, 1204
Eco147I	AGGCCT	1 cut(s)	1354
Eco24I	GRGCYC	3 cut(s)	68, 167, 185
Eco31I	GGTCTC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	355
Eco47III	AGCGCT	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	3 cut(s)	824, 1257, 1512
Eco88I	CYCGRG	2 cut(s)	134, 153
Eco91I	GGTNACC	1 cut(s)	1793
EcoICRI	GAGCTC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	1793
EcoRII	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
EcoT14I	CCWWGG	4 cut(s)	255, 790, 1106, 1204
EcoT22I	ATGCAT	1 cut(s)	1053
EcoT38I	GRGCYC	3 cut(s)	68, 167, 185
ErhI	CCWWGG	4 cut(s)	255, 790, 1106, 1204
FaeI	CATG	9 cut(s)	473, 577, 794, 1110, 1202, 1249, 1274, 1376, 1589
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	9 cut(s)	469, 573, 790, 1106, 1198, 1245, 1270, 1372, 1585
FbaI	TGATCA	1 cut(s)	780
FblI	GTMKAC	1 cut(s)	1486
Fnu4HI	GCNGC	4 cut(s)	264, 492, 1263, 1598
FokI	GGATG	8 cut(s)	215, 625, 845, 1268, 1322, 1424, 1551, 1795
FriOI	GRGCYC	3 cut(s)	68, 167, 185
Fsp4HI	GCNGC	4 cut(s)	264, 492, 1263, 1598
FspBI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
GlaI	GCGC	2 cut(s)	16, 740
GluI	GCNGC	4 cut(s)	264, 492, 1263, 1598
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	4 cut(s)	78, 1354, 1499, 1600
HapII	CCGG	5 cut(s)	122, 135, 861, 1316, 1521
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	2 cut(s)	17, 741
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	9 cut(s)	473, 577, 794, 1110, 1202, 1249, 1274, 1376, 1589
Hin6I	GCGC	2 cut(s)	15, 739
HinP1I	GCGC	2 cut(s)	15, 739
HinfI	GANTC	5 cut(s)	395, 631, 803, 1324, 1662
HpaII	CCGG	5 cut(s)	122, 135, 861, 1316, 1521
HphI	GGTGA	3 cut(s)	775, 1004, 1805
Hpy166II	GTNNAC	5 cut(s)	59, 192, 343, 764, 1487
Hpy188I	TCNGA	8 cut(s)	37, 212, 808, 1035, 1047, 1129, 1659, 1693
Hpy188III	TCNNGA	8 cut(s)	102, 273, 921, 1290, 1316, 1385, 1393, 1763
Hpy8I	GTNNAC	5 cut(s)	59, 192, 343, 764, 1487
Hpy99I	CGWCG	4 cut(s)	44, 94, 97, 103
HpyAV	CCTTC	9 cut(s)	142, 270, 283, 698, 752, 889, 1071, 1274, 1636
HpyCH4III	ACNGT	6 cut(s)	626, 918, 1023, 1491, 1515, 1702
HpyCH4V	TGCA	8 cut(s)	461, 479, 751, 977, 1007, 1051, 1219, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 331, 1532
HpyF3I	CTNAG	6 cut(s)	62, 184, 483, 644, 1481, 1713
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	9 cut(s)	473, 577, 794, 1110, 1202, 1249, 1274, 1376, 1589
HspAI	GCGC	2 cut(s)	15, 739
Kpn2I	TCCGGA	1 cut(s)	1315
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	7 cut(s)	12, 71, 124, 279, 331, 1259, 1318
Lsp1109I	GCAGC	3 cut(s)	250, 478, 1249
LweI	GCATC	5 cut(s)	488, 1038, 1300, 1405, 1435
MaeI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
MaeIII	GTNAC	4 cut(s)	694, 949, 992, 1793
MalI	GATC	6 cut(s)	50, 54, 110, 782, 813, 969
MboI	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
MhlI	GDGCHC	4 cut(s)	68, 167, 185, 1753
MmeI	TCCRAC	2 cut(s)	430, 564
Mph1103I	ATGCAT	1 cut(s)	1053
MroI	TCCGGA	1 cut(s)	1315
MroXI	GAANNNNTTC	2 cut(s)	1323, 1380
MseI	TTAA	3 cut(s)	366, 677, 1439
MslI	CAYNNNNRTG	1 cut(s)	1377
MspI	CCGG	5 cut(s)	122, 135, 861, 1316, 1521
MspR9I	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
Mva1269I	GAATGC	2 cut(s)	1051, 1482
MvaI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
MwoI	GCNNNNNNNGC	3 cut(s)	149, 331, 1532
NciI	CCSGG	3 cut(s)	135, 136, 862
NcoI	CCATGG	2 cut(s)	790, 1106
NdeII	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
NlaIII	CATG	9 cut(s)	473, 577, 794, 1110, 1202, 1249, 1274, 1376, 1589
NlaIV	GGNNCC	3 cut(s)	120, 253, 1159
NmeAIII	GCCGAG	1 cut(s)	1525
NmuCI	GTSAC	4 cut(s)	694, 949, 992, 1793
NsiI	ATGCAT	1 cut(s)	1053
NspI	RCATGY	2 cut(s)	577, 1589
PaeI	GCATGC	1 cut(s)	1589
PceI	AGGCCT	1 cut(s)	1354
PciI	ACATGT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 95, 98, 122
PctI	GAATGC	2 cut(s)	1051, 1482
PdmI	GAANNNNTTC	2 cut(s)	1323, 1380
PfeI	GAWTC	5 cut(s)	395, 631, 803, 1324, 1662
PflMI	CCANNNNNTGG	2 cut(s)	198, 1608
PkrI	GCNGC	4 cut(s)	265, 493, 1264, 1599
Ple19I	CGATCG	1 cut(s)	55
PscI	ACATGT	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
PspEI	GGTNACC	1 cut(s)	1793
PspGI	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
PspN4I	GGNNCC	3 cut(s)	120, 253, 1159
PspPI	GGNCC	2 cut(s)	355, 1599
PstNI	CAGNNNCTG	1 cut(s)	1535
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	9 cut(s)	82, 559, 567, 615, 623, 763, 915, 1681, 1718
RsaNI	GTAC	9 cut(s)	81, 558, 566, 614, 622, 762, 914, 1680, 1717
RseI	CAYNNNNRTG	1 cut(s)	1377
SacI	GAGCTC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	366, 677, 1439
SatI	GCNGC	4 cut(s)	264, 492, 1263, 1598
Sau3AI	GATC	6 cut(s)	48, 52, 108, 780, 811, 967
Sau96I	GGNCC	2 cut(s)	355, 1599
ScaI	AGTACT	2 cut(s)	915, 1718
ScrFI	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
SduI	GDGCHC	4 cut(s)	68, 167, 185, 1753
SfaNI	GCATC	5 cut(s)	488, 1038, 1300, 1405, 1435
SfcI	CTRYAG	1 cut(s)	1511
SinI	GGWCC	1 cut(s)	355
SmaI	CCCGGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	1377
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SphI	GCATGC	1 cut(s)	1589
SseBI	AGGCCT	1 cut(s)	1354
SsiI	CCGC	2 cut(s)	1473, 1597
SspMI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
SstI	GAGCTC	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	1354
StyD4I	CCNGG	7 cut(s)	133, 134, 860, 1079, 1349, 1418, 1577
StyI	CCWWGG	4 cut(s)	255, 790, 1106, 1204
TaaI	ACNGT	6 cut(s)	626, 918, 1023, 1491, 1515, 1702
TaqI	TCGA	3 cut(s)	51, 101, 1067
TatI	WGTACW	4 cut(s)	557, 565, 913, 1716
TauI	GCSGC	1 cut(s)	1600
TfiI	GAWTC	5 cut(s)	395, 631, 803, 1324, 1662
Tru1I	TTAA	3 cut(s)	366, 677, 1439
Tru9I	TTAA	3 cut(s)	366, 677, 1439
TscAI	CASTG	8 cut(s)	66, 192, 250, 439, 699, 823, 947, 1305
TseFI	GTSAC	4 cut(s)	694, 949, 992, 1793
TseI	GCWGC	3 cut(s)	263, 491, 1262
Tsp45I	GTSAC	4 cut(s)	694, 949, 992, 1793
TspDTI	ATGAA	9 cut(s)	249, 458, 849, 1053, 1259, 1389, 1422, 1553, 1677
TspGWI	ACGGA	2 cut(s)	631, 1356
TspMI	CCCGGG	1 cut(s)	134
TspRI	CASTG	8 cut(s)	66, 192, 250, 439, 699, 823, 947, 1305
Van91I	CCANNNNNTGG	2 cut(s)	198, 1608
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	3 cut(s)	590, 598, 1558
XbaI	TCTAGA	3 cut(s)	920, 1289, 1384
XceI	RCATGY	2 cut(s)	577, 1589
XmaI	CCCGGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	1486
XmnI	GAANNNNTTC	2 cut(s)	1323, 1380
XspI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
ZrmI	AGTACT	2 cut(s)	915, 1718
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.