FvH4_1g12713

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6984903 .. 6987494
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12713.t1

Sequence Viewer

Length: 1398 bp
ATGTTTCCTCTCAATCCCCAACACTTGCCCAAATCATTGTCCTCTCTCTTCTCAGCCTACGCTTCCTTTACAGCGTTCAAGTTCTTGCTCCAATCCCTTGTCAATGAGCTCAAACACTTCATCCCCCCCTGGGTCCGATCTTACATATACTCCAAGCTTCGAAAATACTTCTTCAAATCTCGCCCAAATGACAATCTCACTCTTGTCATCAACAAGGTCATCGGCATGGAGCTCAACGAGGCCTACGACAAGGTGGAGGTTTACCTCGGAGCCAAGATTAGTCCCTCCGATTCGCGACTCGAACTGAGCAAGACGAACCGGCAGAAGAGTGTCAGCCTTGCCATTGAGAAAAGAGGCCAAGTTATCACGGACACATTCGATGACATTGAGCTCCGATGGCGCTATGTGTCCAAATTATCAAAGAATACTTGCACAACGAAGGACAGGCATCCTGGTGCAGTTGATGGATATGCGGAAGAGAAGTGTCAGTGGAGCTTTGAGTTAACTTTCGATAAGAAACACAGAGACAAAGTGATAGACTCGTACATGCCCTATATGCTTGCTCAGGCTGAGTCCATTAAACAAGGAGAAAGGGTTCTGAAGCTTCATAGCACTGGCAGGGATCCTTATGGGAGTCCCAAGAAGAGTTGTATAGACCTCGTGCACCCTGCAACTTTCGAGACGATGGCAATGGATCCAGAGGTGAAGGAAATGATTATAGATGATTTGGACAGGTTTGTGAAGAGAAGGGAGTTTTATAAGAAGGTTGGGAAGGCTTGGAAAAGAGGGTATTTGTTGTACGGTCCACCCGGTACTGGCAAATCAAGCTTGATTGCAGCCATGGCTAATTATCTCAAGTTTGATGTGTATGATTTGGAGCTTACTAGTGTTTATGACAACTCGGAATTGAGGAGGGTGTTGTTGTCTACTTCAAATCGTTCTATTCTGGTTGTGGAGGATATTGATTGCAGTGTGCAAATCAAAAGTAGGGAATCAGCTCAACCTTCCAAAAGCTCTGCAAGCAAGTTCACCCTATCGGGTTTATTGAACTTCATAGATGGGCTGTGGTCATGCTGCGGCGATGAGCGAATAATTGTGTTCACCACCAATCACAAGGAGAGATTAGACCCTGCATTGTTTCGTCCTGGTCGAATGGACTTGCACATTCACTTGTCATATTGCACTCCAAGTGGGTTCAGAATCTTGGCCTCTAACTACCTTGGCATTCATGAAAGCAGCCCTCATCACCTCTTTGGAGAAATCGAAAGCTTAATAAAGATCACAGAGGTCACCCCTGCAGCTATAGCAGAGGAGCTTATGAAGAATGATGATGCAGATGTTGTTCTAGAAGGGCTTGTAAGATTCCTCAAAGAAAAGAAGGCTGCAGATGATAAATGA

Protein Analysis

466

Amino Acids

53.11

Weight (kDa)

8.68

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 41 - 136 7.9e-19 Domain associated at C-terminal with AAA
AAA PF00004 264 - 392 1.2e-18 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 394 - 462 1.4e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AccI GTMKAC 1 cut(s) 926
AccII CGCG 1 cut(s) 295
AciI CCGC 2 cut(s) 473, 1077
AclWI GGATC 4 cut(s) 617, 630, 689, 702
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 3 cut(s) 545, 800, 814
AfiI CCNNNNNNNGG 2 cut(s) 130, 815
AgsI TTSAA 4 cut(s) 79, 175, 933, 1048
AhlI ACTAGT 1 cut(s) 884
AjnI CCWGG 3 cut(s) 128, 451, 1144
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
Alw21I GWGCWC 4 cut(s) 111, 234, 393, 666
Alw26I GTCTC 2 cut(s) 519, 674
Alw44I GTGCAC 1 cut(s) 662
AlwI GGATC 4 cut(s) 617, 630, 689, 702
AoxI GGCC 3 cut(s) 240, 355, 1206
ApaLI GTGCAC 1 cut(s) 662
ApeKI GCWGC 5 cut(s) 836, 1074, 1236, 1298, 1382
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 2 cut(s) 133, 803
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 5 cut(s) 715, 1021, 1093, 1238, 1282
AsuII TTCGAA 1 cut(s) 160
AvaII GGWCC 2 cut(s) 133, 803
BaeGI GKGCMC 1 cut(s) 666
BamHI GGATCC 2 cut(s) 622, 694
BanII GRGCYC 3 cut(s) 111, 234, 393
BauI CACGAG 1 cut(s) 659
Bbv12I GWGCWC 4 cut(s) 111, 234, 393, 666
BbvI GCAGC 5 cut(s) 848, 1061, 1248, 1310, 1369
BccI CCATC 4 cut(s) 390, 458, 679, 1052
BciT130I CCWGG 3 cut(s) 130, 453, 1146
BcnI CCSGG 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 519, 674
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 2 cut(s) 885, 1346
BfmI CTRYAG 3 cut(s) 1296, 1302, 1383
BfoI RGCGCY 1 cut(s) 403
BisI GCNGC 6 cut(s) 837, 1075, 1078, 1237, 1299, 1383
BlsI GCNGC 6 cut(s) 838, 1076, 1079, 1238, 1300, 1384
Bme1390I CCNGG 4 cut(s) 130, 453, 810, 1146
Bme18I GGWCC 2 cut(s) 133, 803
BmgT120I GGNCC 2 cut(s) 133, 803
BmiI GGNNCC 4 cut(s) 134, 271, 624, 696
BmrFI CCNGG 4 cut(s) 130, 453, 810, 1146
BmsI GCATC 2 cut(s) 457, 1321
Bpu10I CCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 839
BpuMI CCSGG 1 cut(s) 810
BsaJI CCNNGG 5 cut(s) 128, 129, 265, 840, 1219
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 579, 609
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 815
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 2 cut(s) 619, 820
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 3 cut(s) 130, 453, 1146
BseDI CCNNGG 5 cut(s) 128, 129, 265, 840, 1219
BseGI GGATG 2 cut(s) 120, 448
BseLI CCNNNNNNNGG 2 cut(s) 130, 815
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 4 cut(s) 66, 296, 561, 578
BseNI ACTGG 2 cut(s) 619, 820
BseRI GAGGAG 2 cut(s) 925, 1325
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 5 cut(s) 848, 1061, 1248, 1310, 1369
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 3 cut(s) 242, 357, 1208
BsiHKAI GWGCWC 4 cut(s) 111, 234, 393, 666
BsiSI CCGG 2 cut(s) 319, 810
BslFI GGGAC 2 cut(s) 267, 621
BslI CCNNNNNNNGG 2 cut(s) 130, 815
BsmAI GTCTC 2 cut(s) 519, 674
BsmBI CGTCTC 1 cut(s) 674
BsmFI GGGAC 2 cut(s) 267, 621
BsmI GAATGC 1 cut(s) 1224
BsnI GGCC 3 cut(s) 242, 357, 1208
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 4 cut(s) 111, 234, 393, 666
Bsp143I GATC 4 cut(s) 137, 622, 694, 1278
Bsp19I CCATGG 1 cut(s) 840
Bsp68I TCGCGA 1 cut(s) 295
BspACI CCGC 2 cut(s) 473, 1077
BspANI GGCC 3 cut(s) 242, 357, 1208
BspCNI CTCAG 4 cut(s) 65, 297, 562, 577
BspFNI CGCG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 4 cut(s) 134, 271, 624, 696
BspMAI CTGCAG 2 cut(s) 1300, 1387
BspPI GGATC 4 cut(s) 617, 630, 689, 702
BspT104I TTCGAA 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 2 cut(s) 619, 820
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 5 cut(s) 128, 129, 265, 840, 1219
BssMI GATC 4 cut(s) 137, 622, 694, 1278
BssSI CACGAG 1 cut(s) 659
BssT1I CCWWGG 2 cut(s) 840, 1219
Bst2BI CACGAG 1 cut(s) 659
Bst2UI CCWGG 3 cut(s) 130, 453, 1146
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 5 cut(s) 53, 320, 471, 638, 737
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 561, 1021
BstDEI CTNAG 4 cut(s) 52, 305, 564, 570
BstDSI CCRYGG 1 cut(s) 840
BstEII GGTNACC 1 cut(s) 1288
BstF5I GGATG 2 cut(s) 120, 448
BstFNI CGCG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 4 cut(s) 140, 625, 697, 1281
BstMAI GTCTC 2 cut(s) 519, 674
BstMBI GATC 4 cut(s) 137, 622, 694, 1278
BstMWI GCNNNNNNNGC 6 cut(s) 397, 556, 825, 842, 1020, 1304
BstNI CCWGG 3 cut(s) 130, 453, 1146
BstNSI RCATGY 1 cut(s) 550
BstPI GGTNACC 1 cut(s) 1288
BstSCI CCNGG 4 cut(s) 128, 451, 808, 1144
BstSFI CTRYAG 3 cut(s) 1296, 1302, 1383
BstSLI GKGCMC 1 cut(s) 666
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 5 cut(s) 848, 1061, 1248, 1310, 1369
BstX2I RGATCY 2 cut(s) 622, 694
BstYI RGATCY 2 cut(s) 622, 694
BsuRI GGCC 3 cut(s) 242, 357, 1208
BtgI CCRYGG 1 cut(s) 840
BtgZI GCGATG 1 cut(s) 1095
BtsCI GGATG 2 cut(s) 120, 448
BtsI GCAGTG 1 cut(s) 976
BtsIMutI CAGTG 3 cut(s) 494, 612, 976
BtuMI TCGCGA 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 561, 1021
CciI TCATGA 1 cut(s) 1228
CfoI GCGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 133, 803
Csp6I GTAC 3 cut(s) 544, 799, 813
CviAII CATG 5 cut(s) 226, 547, 841, 1071, 1229
CviQI GTAC 3 cut(s) 544, 799, 813
DdeI CTNAG 4 cut(s) 52, 305, 564, 570
DpnI GATC 4 cut(s) 139, 624, 696, 1280
DpnII GATC 4 cut(s) 137, 622, 694, 1278
Eam1104I CTCTTC 5 cut(s) 53, 320, 471, 638, 737
EarI CTCTTC 5 cut(s) 53, 320, 471, 638, 737
Ecl136II GAGCTC 3 cut(s) 109, 232, 391
Eco130I CCWWGG 2 cut(s) 840, 1219
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 3 cut(s) 111, 234, 393
Eco47I GGWCC 2 cut(s) 133, 803
Eco53kI GAGCTC 3 cut(s) 109, 232, 391
Eco57I CTGAAG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 1288
EcoICRI GAGCTC 3 cut(s) 109, 232, 391
EcoO65I GGTNACC 1 cut(s) 1288
EcoRII CCWGG 3 cut(s) 128, 451, 1144
EcoT14I CCWWGG 2 cut(s) 840, 1219
EcoT38I GRGCYC 3 cut(s) 111, 234, 393
ErhI CCWWGG 2 cut(s) 840, 1219
Esp3I CGTCTC 1 cut(s) 674
FaeI CATG 5 cut(s) 229, 550, 844, 1074, 1232
FaqI GGGAC 2 cut(s) 267, 621
FatI CATG 5 cut(s) 225, 546, 840, 1070, 1228
FblI GTMKAC 1 cut(s) 926
Fnu4HI GCNGC 6 cut(s) 837, 1075, 1078, 1237, 1299, 1383
FokI GGATG 2 cut(s) 107, 435
FriOI GRGCYC 3 cut(s) 111, 234, 393
Fsp4HI GCNGC 6 cut(s) 837, 1075, 1078, 1237, 1299, 1383
FspBI CTAG 2 cut(s) 885, 1346
GlaI GCGC 1 cut(s) 401
GluI GCNGC 6 cut(s) 837, 1075, 1078, 1237, 1299, 1383
HaeII RGCGCY 1 cut(s) 403
HaeIII GGCC 3 cut(s) 242, 357, 1208
HapII CCGG 2 cut(s) 319, 810
HhaI GCGC 1 cut(s) 402
Hin1II CATG 5 cut(s) 229, 550, 844, 1074, 1232
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 4 cut(s) 155, 602, 826, 1267
HinfI GANTC 8 cut(s) 290, 297, 539, 572, 634, 992, 1200, 1362
HpaI GTTAAC 1 cut(s) 504
HpaII CCGG 2 cut(s) 319, 810
HphI GGTGA 5 cut(s) 715, 1021, 1093, 1238, 1282
Hpy166II GTNNAC 7 cut(s) 262, 504, 664, 806, 927, 1029, 1101
Hpy188I TCNGA 7 cut(s) 137, 269, 289, 395, 600, 904, 1199
Hpy188III TCNNGA 5 cut(s) 294, 679, 698, 1229, 1346
Hpy8I GTNNAC 7 cut(s) 262, 504, 664, 806, 927, 1029, 1101
HpyAV CCTTC 8 cut(s) 433, 700, 741, 757, 766, 1014, 1343, 1372
HpyCH4III ACNGT 1 cut(s) 803
HpyF10VI GCNNNNNNNGC 6 cut(s) 397, 556, 825, 842, 1020, 1304
HpyF3I CTNAG 4 cut(s) 52, 305, 564, 570
Hsp92II CATG 5 cut(s) 229, 550, 844, 1074, 1232
HspAI GCGC 1 cut(s) 400
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 4 cut(s) 137, 622, 694, 1278
LmnI GCTCC 7 cut(s) 93, 229, 269, 396, 492, 877, 1312
Lsp1109I GCAGC 5 cut(s) 848, 1061, 1248, 1310, 1369
LweI GCATC 2 cut(s) 457, 1321
MaeI CTAG 2 cut(s) 885, 1346
MaeIII GTNAC 1 cut(s) 1288
MalI GATC 4 cut(s) 139, 624, 696, 1280
MboI GATC 4 cut(s) 137, 622, 694, 1278
MboII GAAGA 7 cut(s) 40, 163, 337, 488, 655, 754, 1333
MflI RGATCY 2 cut(s) 622, 694
MhlI GDGCHC 4 cut(s) 111, 234, 393, 666
MluCI AATT 4 cut(s) 413, 847, 905, 1092
MlyI GAGTC 4 cut(s) 291, 533, 581, 643
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 3 cut(s) 503, 579, 1271
MslI CAYNNNNRTG 2 cut(s) 224, 453
MspI CCGG 2 cut(s) 319, 810
MspR9I CCNGG 4 cut(s) 130, 453, 810, 1146
Mva1269I GAATGC 1 cut(s) 1224
MvaI CCWGG 3 cut(s) 130, 453, 1146
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 6 cut(s) 397, 556, 825, 842, 1020, 1304
NciI CCSGG 1 cut(s) 810
NcoI CCATGG 1 cut(s) 840
NdeII GATC 4 cut(s) 137, 622, 694, 1278
NlaIII CATG 5 cut(s) 229, 550, 844, 1074, 1232
NlaIV GGNNCC 4 cut(s) 134, 271, 624, 696
NmuCI GTSAC 1 cut(s) 1288
NruI TCGCGA 1 cut(s) 295
NspI RCATGY 1 cut(s) 550
NspV TTCGAA 1 cut(s) 160
PagI TCATGA 1 cut(s) 1228
PasI CCCWGGG 1 cut(s) 129
PceI AGGCCT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 1147
PctI GAATGC 1 cut(s) 1224
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 4 cut(s) 290, 992, 1200, 1362
PkrI GCNGC 6 cut(s) 838, 1076, 1079, 1238, 1300, 1384
PleI GAGTC 4 cut(s) 291, 533, 580, 642
PpsI GAGTC 4 cut(s) 291, 533, 580, 642
PsiI TTATAA 1 cut(s) 759
Psp124BI GAGCTC 3 cut(s) 111, 234, 393
Psp6I CCWGG 3 cut(s) 128, 451, 1144
PspEI GGTNACC 1 cut(s) 1288
PspGI CCWGG 3 cut(s) 128, 451, 1144
PspN4I GGNNCC 4 cut(s) 134, 271, 624, 696
PspPI GGNCC 2 cut(s) 133, 803
PstI CTGCAG 2 cut(s) 1300, 1387
PsuI RGATCY 2 cut(s) 622, 694
RruI TCGCGA 1 cut(s) 295
RsaI GTAC 3 cut(s) 545, 800, 814
RsaNI GTAC 3 cut(s) 544, 799, 813
RseI CAYNNNNRTG 2 cut(s) 224, 453
SacI GAGCTC 3 cut(s) 111, 234, 393
SaqAI TTAA 3 cut(s) 503, 579, 1271
SatI GCNGC 6 cut(s) 837, 1075, 1078, 1237, 1299, 1383
Sau3AI GATC 4 cut(s) 137, 622, 694, 1278
Sau96I GGNCC 2 cut(s) 133, 803
SchI GAGTC 4 cut(s) 291, 533, 581, 643
ScrFI CCNGG 4 cut(s) 130, 453, 810, 1146
SduI GDGCHC 4 cut(s) 111, 234, 393, 666
SfaNI GCATC 2 cut(s) 457, 1321
SfcI CTRYAG 3 cut(s) 1296, 1302, 1383
SfuI TTCGAA 1 cut(s) 160
SinI GGWCC 2 cut(s) 133, 803
SmiMI CAYNNNNRTG 2 cut(s) 224, 453
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
SpeI ACTAGT 1 cut(s) 884
Sse9I AATT 4 cut(s) 413, 847, 905, 1092
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 2 cut(s) 473, 1077
SspMI CTAG 2 cut(s) 885, 1346
SstI GAGCTC 3 cut(s) 111, 234, 393
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 4 cut(s) 128, 451, 808, 1144
StyI CCWWGG 2 cut(s) 840, 1219
TaaI ACNGT 1 cut(s) 803
TaqI TCGA 7 cut(s) 160, 300, 378, 510, 678, 1150, 1263
TasI AATT 4 cut(s) 413, 847, 905, 1092
TauI GCSGC 1 cut(s) 1080
TfiI GAWTC 4 cut(s) 290, 992, 1200, 1362
Tru1I TTAA 3 cut(s) 503, 579, 1271
Tru9I TTAA 3 cut(s) 503, 579, 1271
TscAI CASTG 3 cut(s) 494, 619, 976
TseFI GTSAC 1 cut(s) 1288
TseI GCWGC 5 cut(s) 836, 1074, 1236, 1298, 1382
Tsp45I GTSAC 1 cut(s) 1288
TspDTI ATGAA 6 cut(s) 109, 596, 1042, 1217, 1245, 1334
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 494, 619, 976
VneI GTGCAC 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 133, 803
XbaI TCTAGA 1 cut(s) 1345
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 926
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 2 cut(s) 885, 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.