Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Forward (+)

18211067 .. 18212270

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCTTTTGTGCTTGCTCAGGCTGAGTCCATCAAACAAAGGGAGAGGGTTCTGAAGCTTCATTGCGTTGACAATGATCCCTATGGGGGTTCCAAGAGTTGCATAGACCTCGTGCACCCTGCAACTTTCGAGACGATGGCAATGGATCCAGAGCTCAAGAAGATGGTTATGGATGACTTGGACAGGTTTGTGAGGAGAAGGGAGTTGTACAAGAAGGTTGGGAAGGCTTGGAAAAGAGGGTATTTGTTGTACGGTCCACCTGGTACTGGAAAATCGAGCTTGATTGCAGCCATGGCAAATTATCTCAAGTTTGATATATATGATCTGGAGCTTTCTAACATTCATGGCAACTCTGAATTGAGGAGGGTTTTACTTTCTACATCTAATCGTTCTATTGTGGTTGTGGAGGATATTGATTGCGGTGTGCAAATCAGAGGTAGGGAATCAGCTGAGCCTTCTAAAAGCTATGCACTTCATGTAGGCAAGTTCACCCTATCGGGTCTATTGAACTTCATGGATGGTCTGTGGTCGTGCTGCGGCGATGAGCGAATAATTGTGCTCACCACCAATCACAAGGAGAGATTAGACCCGGCATTGTTGCGTCCTGGTCATATGGACTTGCACATTCACCTGTCATATTGCACTCCAAGTGGGTTCAGAGTCTTGGCCTCTAACTACCTTGGCATTCATGAAAGCAGCCCTCATCACCTCTTTGGAGAAATTGAAAGCTTGATAAAGAGCACAGAGGTCACCCCTGCAGCTATAGCAGAGGAGCTTATGAAGAATGATGATGCAGATGTTGTTCTGGAAGGACTTGTCAAATTCCTCAAAGAAATGAAGGCTGCAGATGATAAAATGAAGTCAAAAAAGGCTGAAAAAGCTGAGCAGGAAAGGATTAAGAAAGCGGAAGAAGGGAGTAAAAAAGGAATTAAGGAGAGGACTAGCAAAGCAAAGGAGATAGGGACTGAGAAGGGAAAGGAGGAAGGGGCTAACAAAGCAAGTATTCAGGAAAGGGAAAATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

342

Amino Acids

38.31

Weight (kDa)

7.64

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	81 - 212	8.7e-18	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	214 - 286	8.3e-24	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	420, 537, 905
AclWI	GGATC	3 cut(s)	71, 140, 153
AcsI	RAATTY	1 cut(s)	821
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	3 cut(s)	209, 251, 265
AfiI	CCNNNNNNNGG	2 cut(s)	86, 266
AgsI	TTSAA	2 cut(s)	508, 725
AjnI	CCWGG	2 cut(s)	259, 604
Alw21I	GWGCWC	4 cut(s)	117, 156, 561, 743
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	71, 140, 153
AoxI	GGCC	1 cut(s)	666
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	5 cut(s)	287, 534, 696, 758, 842
ApoI	RAATTY	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	5 cut(s)	481, 553, 620, 698, 742
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	110
Bbv12I	GWGCWC	4 cut(s)	117, 156, 561, 743
BbvI	GCAGC	5 cut(s)	299, 521, 708, 770, 829
BccI	CCATC	4 cut(s)	38, 130, 157, 512
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	2 cut(s)	261, 606
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	942
BfmI	CTRYAG	3 cut(s)	756, 762, 843
BisI	GCNGC	6 cut(s)	288, 535, 538, 697, 759, 843
BlpI	GCTNAGC	2 cut(s)	450, 882
BlsI	GCNGC	6 cut(s)	289, 536, 539, 698, 760, 844
Bme1390I	CCNGG	3 cut(s)	261, 590, 606
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	91, 147
BmrFI	CCNGG	3 cut(s)	261, 590, 606
BmsI	GCATC	1 cut(s)	781
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu1102I	GCTNAGC	2 cut(s)	450, 882
BpuEI	CTTGAG	2 cut(s)	140, 290
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	291, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 266
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	2 cut(s)	61, 147
BseBI	CCWGG	2 cut(s)	261, 606
BseDI	CCNNGG	2 cut(s)	291, 679
BseGI	GGATG	2 cut(s)	178, 523
BseLI	CCNNNNNNNGG	2 cut(s)	86, 266
BseMI	GCAATG	2 cut(s)	61, 147
BseMII	CTCAG	5 cut(s)	15, 32, 441, 873, 957
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	3 cut(s)	208, 376, 785
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	5 cut(s)	299, 521, 708, 770, 829
BshFI	GGCC	1 cut(s)	668
BsiHKAI	GWGCWC	4 cut(s)	117, 156, 561, 743
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	976
BslI	CCNNNNNNNGG	2 cut(s)	86, 266
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	976
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	668
Bsp1286I	GDGCHC	4 cut(s)	117, 156, 561, 743
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	76, 145, 322
Bsp1720I	GCTNAGC	2 cut(s)	450, 882
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	3 cut(s)	420, 537, 905
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	5 cut(s)	16, 31, 442, 874, 958
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	91, 147
BspMAI	CTGCAG	2 cut(s)	760, 847
BspPI	GGATC	3 cut(s)	71, 140, 153
BsrDI	GCAATG	2 cut(s)	61, 147
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	291, 679
BssMI	GATC	3 cut(s)	76, 145, 322
BssSI	CACGAG	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	291, 679
Bst2BI	CACGAG	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	261, 606
Bst4CI	ACNGT	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	5 cut(s)	18, 24, 450, 882, 966
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	2 cut(s)	178, 523
BstKTI	GATC	3 cut(s)	79, 148, 325
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	76, 145, 322
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 293, 764, 878, 995
BstNI	CCWGG	2 cut(s)	261, 606
BstPI	GGTNACC	1 cut(s)	748
BstSCI	CCNGG	3 cut(s)	259, 588, 604
BstSFI	CTRYAG	3 cut(s)	756, 762, 843
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	5 cut(s)	299, 521, 708, 770, 829
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	668
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	178, 523
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	590
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	208, 250, 264
CviAII	CATG	5 cut(s)	292, 344, 476, 514, 689
CviQI	GTAC	3 cut(s)	208, 250, 264
DdeI	CTNAG	5 cut(s)	18, 24, 450, 882, 966
DpnI	GATC	3 cut(s)	78, 147, 324
DpnII	GATC	3 cut(s)	76, 145, 322
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	291, 679
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	259, 604
EcoT14I	CCWWGG	2 cut(s)	291, 679
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	291, 679
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	5 cut(s)	295, 347, 479, 517, 692
FaqI	GGGAC	1 cut(s)	976
FatI	CATG	5 cut(s)	291, 343, 475, 513, 688
FauNDI	CATATG	1 cut(s)	612
Fnu4HI	GCNGC	6 cut(s)	288, 535, 538, 697, 759, 843
FokI	GGATG	2 cut(s)	185, 530
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	6 cut(s)	288, 535, 538, 697, 759, 843
FspBI	CTAG	1 cut(s)	942
GluI	GCNGC	6 cut(s)	288, 535, 538, 697, 759, 843
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	590
Hin1II	CATG	5 cut(s)	295, 347, 479, 517, 692
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	2 cut(s)	56, 727
HinfI	GANTC	3 cut(s)	26, 443, 660
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	5 cut(s)	481, 553, 620, 698, 742
Hpy166II	GTNNAC	4 cut(s)	70, 115, 257, 489
Hpy188I	TCNGA	4 cut(s)	54, 355, 434, 659
Hpy188III	TCNNGA	7 cut(s)	130, 149, 157, 326, 689, 806, 1007
Hpy8I	GTNNAC	4 cut(s)	70, 115, 257, 489
HpyAV	CCTTC	9 cut(s)	192, 208, 217, 465, 803, 832, 905, 964, 977
HpyCH4III	ACNGT	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 293, 764, 878, 995
HpyF3I	CTNAG	5 cut(s)	18, 24, 450, 882, 966
Hsp92II	CATG	5 cut(s)	295, 347, 479, 517, 692
Kzo9I	GATC	3 cut(s)	76, 145, 322
LmnI	GCTCC	2 cut(s)	328, 772
Lsp1109I	GCAGC	5 cut(s)	299, 521, 708, 770, 829
LweI	GCATC	1 cut(s)	781
MabI	ACCWGGT	1 cut(s)	259
MaeI	CTAG	1 cut(s)	942
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	3 cut(s)	78, 147, 324
MboI	GATC	3 cut(s)	76, 145, 322
MboII	GAAGA	3 cut(s)	172, 793, 920
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	4 cut(s)	117, 156, 561, 743
MluCI	AATT	7 cut(s)	298, 356, 552, 720, 821, 927, 1018
MlyI	GAGTC	2 cut(s)	35, 669
MseI	TTAA	2 cut(s)	897, 930
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	3 cut(s)	261, 590, 606
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	261, 606
MwoI	GCNNNNNNNGC	5 cut(s)	10, 293, 764, 878, 995
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	3 cut(s)	76, 145, 322
NlaIII	CATG	5 cut(s)	295, 347, 479, 517, 692
NlaIV	GGNNCC	2 cut(s)	91, 147
NmuCI	GTSAC	1 cut(s)	748
PagI	TCATGA	1 cut(s)	688
PctI	GAATGC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	6 cut(s)	289, 536, 539, 698, 760, 844
PleI	GAGTC	2 cut(s)	34, 668
PpsI	GAGTC	2 cut(s)	34, 668
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	259, 604
PspEI	GGTNACC	1 cut(s)	748
PspGI	CCWGG	2 cut(s)	259, 604
PspN4I	GGNNCC	2 cut(s)	91, 147
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	2 cut(s)	760, 847
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	3 cut(s)	209, 251, 265
RsaNI	GTAC	3 cut(s)	208, 250, 264
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	897, 930
SatI	GCNGC	6 cut(s)	288, 535, 538, 697, 759, 843
Sau3AI	GATC	3 cut(s)	76, 145, 322
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	35, 669
ScrFI	CCNGG	3 cut(s)	261, 590, 606
SduI	GDGCHC	4 cut(s)	117, 156, 561, 743
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	3 cut(s)	756, 762, 843
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	155, 305
SmoI	CTYRAG	2 cut(s)	155, 305
Sse9I	AATT	7 cut(s)	298, 356, 552, 720, 821, 927, 1018
SsiI	CCGC	3 cut(s)	420, 537, 905
SspMI	CTAG	1 cut(s)	942
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	3 cut(s)	259, 588, 604
StyI	CCWWGG	2 cut(s)	291, 679
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	129, 275
TasI	AATT	7 cut(s)	298, 356, 552, 720, 821, 927, 1018
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	897, 930
Tru9I	TTAA	2 cut(s)	897, 930
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	5 cut(s)	287, 534, 696, 758, 842
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	9 cut(s)	50, 332, 464, 502, 677, 705, 794, 851, 872
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	821
XspI	CTAG	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.