Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Forward (+)

80115910 .. 80118358

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCCTCTCCCCTTGGAAGACAAATTTAAGAACTATGTCAAAGTTAAGAATGAAATTAAGGGAGAGTTAAACAGTCAATTAACCCCATTACATTTAGCACGCTATCTTTATAAAGGCCAAGTTGTCAGTGATACCTTTGATGACATTGACCTTCGGTGGAGTTACGTGACCAAACCAAAGAAGTCCAAATCCAGGCAGAGTTCTGTTGGAGATGATGAAGAAGAAGTAGAGTGGTGCTTTGAGTTAATGTTCAATGAGAAACACAAAGCCAAAGTGATAGACTCCTACATTCCCTATGTGTTTACTCAGGCCGAATCCATTAAACAAGGGGAGAAAGCTCTAAAGCTTCATTGCTCTGGTAGGGATCATTATGGGACTTCTAAAAGTTGCATAGATCTTGTACACCCTGCAACTTTTGAGACAATAGCAATGGATTCAGAACTTAAAAAAATGATCATAGATGACTTGGATATGTTCGTGAAGAGGAGAGAATTTTATAAGAAGGTTGGGAAGGCTTGGAAAAGAGGTTATTTGTTATATGGTCCACCTGGTACTGGAAAATCTAGCTTGATTGCTGCCATGGCTAATTATCTCCAGTTTGATATACATGATTTGGAGCTTTCTGGTATTCGTGACAACTCTGACTTGAGAAGGGTGTTGTTGTCTACTACAAATCGTTCTATTCTGGTTGTTGAGGACATTGATTGCAGTGAGAAACTAGACCCTGCATTGATGCGTCCAGGTCGAATGGATGTGCACGTTCACTTGTCATATTGCACTCCAAGTGGGTTCAGAACCTTGGCCTCTAACTACCTTGGCATTCATGAAACCAACACTCATCACCTCTGTGGAGAAATTGAAGGCTTAATAGAGAGTGCAGAGGTCACCTCTGCAGTTGTAGCCAAGGAGCTTATGAAGAGTAATGATACCGATGTTGTTCTTGATGGGCTCGTCAAGTTCCTCAAAGAAAAGAAGGTCAAGAATGATAAAGAGAAGTTAAAAAAGGCTAAAAAAGCCGATGAGGAAGGGACTAAGAAAGCAGAGAAGCAGGAAAGGGAGGAGGATACAAACAAAAACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

360

Amino Acids

41.08

Weight (kDa)

6.84

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	177 - 236	1.8e-08	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	259 - 331	4.5e-18	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	111, 498
AccI	GTMKAC	1 cut(s)	665
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	23, 491
AfaI	GTAC	2 cut(s)	402, 553
AfiI	CCNNNNNNNGG	2 cut(s)	192, 554
AgsI	TTSAA	2 cut(s)	253, 860
AjnI	CCWGG	3 cut(s)	191, 547, 739
AleI	CACNNNNGTG	1 cut(s)	846
AluBI	AGCT	5 cut(s)	338, 346, 567, 619, 910
AluI	AGCT	5 cut(s)	338, 346, 567, 619, 910
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	3 cut(s)	115, 309, 801
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	2 cut(s)	23, 491
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	833, 877
AvaII	GGWCC	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	759
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanII	GRGCYC	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	1 cut(s)	938
BciT130I	CCWGG	3 cut(s)	193, 549, 741
BciVI	GTATCC	1 cut(s)	1057
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	564, 719
BfmI	CTRYAG	1 cut(s)	891
BfuI	GTATCC	1 cut(s)	1057
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
Bme1390I	CCNGG	3 cut(s)	193, 549, 741
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmrFI	CCNGG	3 cut(s)	193, 549, 741
BmsI	GCATC	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	166
BsaJI	CCNNGG	5 cut(s)	12, 579, 798, 814, 903
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 554
Bse1I	ACTGG	2 cut(s)	559, 595
Bse3DI	GCAATG	2 cut(s)	349, 435
BseBI	CCWGG	3 cut(s)	193, 549, 741
BseDI	CCNNGG	5 cut(s)	12, 579, 798, 814, 903
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	192, 554
BseMI	GCAATG	2 cut(s)	349, 435
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	2 cut(s)	559, 595
BseRI	GAGGAG	2 cut(s)	499, 1073
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	1 cut(s)	562
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	3 cut(s)	117, 311, 803
BsiHKAI	GWGCWC	1 cut(s)	759
BslFI	GGGAC	2 cut(s)	388, 1042
BslI	CCNNNNNNNGG	2 cut(s)	192, 554
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	2 cut(s)	388, 1042
BsmI	GAATGC	1 cut(s)	819
BsnI	GGCC	3 cut(s)	117, 311, 803
Bsp1286I	GDGCHC	2 cut(s)	759, 951
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	364, 394, 453
Bsp19I	CCATGG	1 cut(s)	579
BspANI	GGCC	3 cut(s)	117, 311, 803
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	823
BspMAI	CTGCAG	1 cut(s)	895
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	349, 435
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	559, 595
BssECI	CCNNGG	5 cut(s)	12, 579, 798, 814, 903
BssMI	GATC	3 cut(s)	364, 394, 453
BssT1I	CCWWGG	5 cut(s)	12, 579, 798, 814, 903
Bst2UI	CCWGG	3 cut(s)	193, 549, 741
Bst4CI	ACNGT	2 cut(s)	74, 1079
Bst6I	CTCTTC	2 cut(s)	476, 911
BstAUI	TGTACA	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	306, 1032
BstDSI	CCRYGG	1 cut(s)	579
BstEII	GGTNACC	1 cut(s)	883
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	3 cut(s)	367, 397, 456
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	3 cut(s)	364, 394, 453
BstMWI	GCNNNNNNNGC	3 cut(s)	581, 899, 1013
BstNI	CCWGG	3 cut(s)	193, 549, 741
BstPI	GGTNACC	1 cut(s)	883
BstSCI	CCNGG	3 cut(s)	191, 547, 739
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	1057
BsuRI	GGCC	3 cut(s)	117, 311, 803
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	2 cut(s)	133, 715
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	823
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	401, 552
CviAII	CATG	3 cut(s)	580, 608, 824
CviQI	GTAC	2 cut(s)	401, 552
DdeI	CTNAG	2 cut(s)	306, 1032
DpnI	GATC	3 cut(s)	366, 396, 455
DpnII	GATC	3 cut(s)	364, 394, 453
Eam1104I	CTCTTC	2 cut(s)	476, 911
EarI	CTCTTC	2 cut(s)	476, 911
Eco130I	CCWWGG	5 cut(s)	12, 579, 798, 814, 903
Eco24I	GRGCYC	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	883
EcoO65I	GGTNACC	1 cut(s)	883
EcoRII	CCWGG	3 cut(s)	191, 547, 739
EcoT14I	CCWWGG	5 cut(s)	12, 579, 798, 814, 903
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	5 cut(s)	12, 579, 798, 814, 903
FaeI	CATG	3 cut(s)	583, 611, 827
FaqI	GGGAC	2 cut(s)	388, 1042
FatI	CATG	3 cut(s)	579, 607, 823
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	665
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	2 cut(s)	564, 719
GluI	GCNGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	117, 311, 803
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	3 cut(s)	583, 611, 827
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	281, 314, 434
HphI	GGTGA	2 cut(s)	833, 877
Hpy166II	GTNNAC	6 cut(s)	303, 403, 545, 666, 757, 763
Hpy188I	TCNGA	3 cut(s)	439, 643, 794
Hpy188III	TCNNGA	5 cut(s)	478, 632, 824, 941, 979
Hpy8I	GTNNAC	6 cut(s)	303, 403, 545, 666, 757, 763
HpyAV	CCTTC	7 cut(s)	161, 496, 505, 645, 854, 967, 1019
HpyCH4III	ACNGT	2 cut(s)	74, 1079
HpyCH4IV	ACGT	2 cut(s)	165, 759
HpyCH4V	TGCA	8 cut(s)	390, 410, 708, 728, 757, 777, 878, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	581, 899, 1013
HpyF3I	CTNAG	2 cut(s)	306, 1032
HpySE526I	ACGT	2 cut(s)	165, 759
Hsp92II	CATG	3 cut(s)	583, 611, 827
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	364, 394, 453
LmnI	GCTCC	2 cut(s)	616, 907
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	1 cut(s)	723
MabI	ACCWGGT	1 cut(s)	547
MaeI	CTAG	2 cut(s)	564, 719
MaeII	ACGT	2 cut(s)	165, 759
MaeIII	GTNAC	4 cut(s)	161, 166, 632, 883
MalI	GATC	3 cut(s)	366, 396, 455
MboI	GATC	3 cut(s)	364, 394, 453
MboII	GAAGA	5 cut(s)	29, 230, 233, 493, 928
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	759, 951
MluCI	AATT	6 cut(s)	23, 54, 77, 491, 586, 855
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	187
MslI	CAYNNNNRTG	1 cut(s)	846
MspR9I	CCNGG	3 cut(s)	193, 549, 741
Mva1269I	GAATGC	1 cut(s)	819
MvaI	CCWGG	3 cut(s)	193, 549, 741
MwoI	GCNNNNNNNGC	3 cut(s)	581, 899, 1013
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	3 cut(s)	364, 394, 453
NlaIII	CATG	3 cut(s)	583, 611, 827
NmuCI	GTSAC	3 cut(s)	166, 632, 883
OliI	CACNNNNGTG	1 cut(s)	846
PagI	TCATGA	1 cut(s)	823
PctI	GAATGC	1 cut(s)	819
PfeI	GAWTC	2 cut(s)	314, 434
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	166
PsiI	TTATAA	2 cut(s)	111, 498
Psp6I	CCWGG	3 cut(s)	191, 547, 739
PspEI	GGTNACC	1 cut(s)	883
PspGI	CCWGG	3 cut(s)	191, 547, 739
PspPI	GGNCC	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	2 cut(s)	402, 553
RsaNI	GTAC	2 cut(s)	401, 552
RseI	CAYNNNNRTG	1 cut(s)	846
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	3 cut(s)	364, 394, 453
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	3 cut(s)	193, 549, 741
SduI	GDGCHC	2 cut(s)	759, 951
SexAI	ACCWGGT	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	891
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	6 cut(s)	23, 54, 77, 491, 586, 855
SspMI	CTAG	2 cut(s)	564, 719
StyD4I	CCNGG	3 cut(s)	191, 547, 739
StyI	CCWWGG	5 cut(s)	12, 579, 798, 814, 903
TaaI	ACNGT	2 cut(s)	74, 1079
TaiI	ACGT	2 cut(s)	168, 762
TaqI	TCGA	1 cut(s)	745
TasI	AATT	6 cut(s)	23, 54, 77, 491, 586, 855
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	314, 434
TscAI	CASTG	2 cut(s)	133, 715
TseFI	GTSAC	3 cut(s)	166, 632, 883
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	3 cut(s)	166, 632, 883
TspDTI	ATGAA	6 cut(s)	66, 231, 338, 812, 840, 929
TspRI	CASTG	2 cut(s)	133, 715
VneI	GTGCAC	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	2 cut(s)	23, 491
XmiI	GTMKAC	1 cut(s)	665
XspI	CTAG	2 cut(s)	564, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.