Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

12068180 .. 12068765

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAACTCAAAGATCTCATCCCCCTCGGGATCATACATATACTCTAAATTTCGGTACTACTTCTTTACTCATCCCTCTGATGATGACCTAACTCTTGTTATCAACAAGCACTCTGGCATGGCACCTAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTAGTCCTTCCGACAAGCGTCTGATACTGAGCAAGACGAATCAACAGAAGACTGTCACCCTCACCATTGAAAAAAGAGGCCAAGTTGTCAGTGATACCTTTGATGACATTGACCTTCGGTGGAGTTACGTGGCCAAACCAAAGAAGTCCAAATCCAAGCAGATTTCTACTGGAGATGATGAAGAAGAAGCCGAATCCATTAAACAAGGGGAGAAAGCTCTAAAGCTTCATTGCTCTGGTAGGGATCATTATGGGACTTCTAAAAGTTGCATAGATCTTGTACACCCTGCAACTTTTGAGACAATAGCAAATGGATTCAGAACTTCAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

8.91

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	11 - 100	5.3e-18	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	37, 420
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	2 cut(s)	56, 450
AgsI	TTSAA	2 cut(s)	239, 495
AluBI	AGCT	2 cut(s)	386, 394
AluI	AGCT	2 cut(s)	386, 394
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	37, 420
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	247, 300
ApoI	RAATTY	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	217, 223
AvaI	CYCGRG	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	461
BglII	AGATCT	2 cut(s)	12, 442
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	123, 163
BoxI	GACNNNNGTC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	2 cut(s)	24, 157
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	24, 157
BseGI	GGATG	2 cut(s)	17, 70
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	249, 302
BshNI	GGYRCC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	249, 302
BsoBI	CYCGRG	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	12, 29, 412, 442
BspANI	GGCC	2 cut(s)	249, 302
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	123, 163
BspPI	GGATC	2 cut(s)	37, 420
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	397
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	24, 157
BssMI	GATC	4 cut(s)	12, 29, 412, 442
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	17, 70
BstKTI	GATC	4 cut(s)	15, 32, 415, 445
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	12, 29, 412, 442
BstPAI	GACNNNNGTC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	12, 442
BstYI	RGATCY	2 cut(s)	12, 442
BsuRI	GGCC	2 cut(s)	249, 302
BtsCI	GGATG	2 cut(s)	17, 70
BtsIMutI	CAGTG	1 cut(s)	265
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	55, 449
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	164, 249, 302, 359, 386, 394
CviKI_1	RGCY	6 cut(s)	164, 249, 302, 359, 386, 394
CviQI	GTAC	2 cut(s)	55, 449
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	4 cut(s)	14, 31, 414, 444
DpnII	GATC	4 cut(s)	12, 29, 412, 442
EaeI	YGGCCR	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	121
FaiI	YATR	7 cut(s)	34, 38, 40, 119, 138, 420, 440
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	2 cut(s)	4, 57
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	249, 302
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	208, 362, 483
HphI	GGTGA	2 cut(s)	217, 223
Hpy166II	GTNNAC	2 cut(s)	154, 451
Hpy188I	TCNGA	4 cut(s)	79, 181, 192, 488
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	2 cut(s)	154, 451
HpyAV	CCTTC	3 cut(s)	136, 186, 293
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	438, 458
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	12, 29, 412, 442
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	99, 324, 390, 468
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	223, 293
MalI	GATC	4 cut(s)	14, 31, 414, 444
MboI	GATC	4 cut(s)	12, 29, 412, 442
MboII	GAAGA	3 cut(s)	229, 362, 365
MflI	RGATCY	2 cut(s)	12, 442
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	34, 85, 124, 142, 239, 239
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	302
NdeII	GATC	4 cut(s)	12, 29, 412, 442
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	123, 163
NmuCI	GTSAC	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	208, 362, 483
Ppu21I	YACGTR	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	123, 163
PsuI	RGATCY	2 cut(s)	12, 442
RsaI	GTAC	2 cut(s)	56, 450
RsaNI	GTAC	2 cut(s)	55, 449
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	12, 29, 412, 442
Sse9I	AATT	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	300
TasI	AATT	1 cut(s)	47
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	208, 362, 483
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	17, 363, 386
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.