RLG00000017007

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
12074709 .. 12076330
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017007

Sequence Viewer

Length: 1464 bp
ATGTTTCCTCTCAATCCCAAACATATGCCTAAATCAGTGGCCTCCCTAATATCAGACTATGCTTCCTCCCTAATCTCAGGCTATGCTTCCATTACAGCATTAGGGATGTTGTTCCGTGCAGTTGTCAAAGAACTCAAAGACCTCATTCCCCCCTGGGTTAGATCATACATATACTCGAAACTCCGGAACTACTTCTTTAGACCTCCTCCCCCAAATGATCGCCTAACATTTGTCATAAAAAAGAACACTGGCATGGAGCCCAACGAGGTCTATAAGAAGGTAGAGGTCTACCTCGGAGCCAAGATTAGTCCCTCCGATATGCGTCTCGAACTGAGCAAAACAAACCGGCAGAAGACAATCAGCCTTGCCATTGAAAAGAGAGGCCAAGTTGTCAAGGACACCTTTGATGACATTAAGCTCCGGTGGCGCTACATAGCCAAATCAAAGAAGTCATCCAAAACCAACAACAGTCCTGCTGATGATGATGAAGAAGAGAAACATAACTGTGGCTTTGAGTTAACTTTCAATAAGAAACACAAAGCCAAAGTGATGGACTCCTACTTGCCCTATGTGTTGGCTCAGGCTGATTCCATTAAGCAACAGCAAAAGGTTCTAAAGCTTTATTGCTCTGCCAATCATAGTTCTTCTAAAAGTAGCATAGATCTTGTGCACCCTGCTACTTTTGACACAGTGGCAATGGAACCAGAACTTAAGAAAATGATTATAGATGACTTGGATAGGTTTCTGGAGAGGAGAGAATTATATAAGAAGGTTGGGAAGGCATGGAAAAGAGGATATTTGTTATATGGTCCACCTGGAACTGGAAAATCTAGCTTAATTGCTGCTATGGCCAATTATCTCAAGTTTGATATATATGATTTGGAGCTTTCTACTATTTACAGCAACTCTGACCTGAGAAGGGTATTGCTGTCTACTACTAATCGTTCCATTGTGGTCATTGAGGATATTGATTGCAGTTTCACACTCTCGGGCCTACTGAACTTCAATGATGGTTTGTGGTCATGCTGCGGTGATGAGAGGATAATTGTGTTCACCACCAACCACAAGGACAAACTAGACCCTGCATTGTTGCGTCCAGGTCGAATGGACGTGCACATCCACTTGTCATATTGCACTCCAAGTGGATTCAGAACCTTAGCATCTAACTACCTTGGCATTCATGAAAGCAACCCTCATCACCTCTGTGGGGAAATTGAAAGCTTAATAGAGAGCACAGAGGTCACTCCTGCAGCTGTAGCTGAGGCTCTTATGAAGAGTGATGATGTAGATGTTGTTCTTGAAGAGCTTGTCAAATTCCTCAAAGAAAAGAAGGCAGCAGATGATAAAATAAAGCTAAAAAATGCTAAAAAGACCGAGGAGGAAAGGACTAAGGCAGAAGAGGAGGAAGGGGCTAACAAAGCTTTCCTGACTCTCTGGGATGAGGATTTGAGCACAAACTGCTAG

Protein Analysis

488

Amino Acids

55.29

Weight (kDa)

8.37

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 49 - 145 3.5e-18 Domain associated at C-terminal with AAA
AAA PF00004 266 - 376 3.9e-17 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 378 - 447 1.4e-21 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 288, 932
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 1 cut(s) 1029
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 1 cut(s) 1313
AfiI CCNNNNNNNGG 3 cut(s) 821, 919, 1207
AflII CTTAAG 1 cut(s) 710
AgsI TTSAA 5 cut(s) 374, 526, 1006, 1217, 1301
AjiI CACGTC 1 cut(s) 1111
AjnI CCWGG 3 cut(s) 152, 814, 1096
AleI CACNNNNGTG 1 cut(s) 1203
Alw21I GWGCWC 4 cut(s) 672, 1116, 1235, 1454
Alw26I GTCTC 1 cut(s) 329
Alw44I GTGCAC 2 cut(s) 668, 1112
Ama87I CYCGRG 1 cut(s) 988
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 4 cut(s) 39, 382, 849, 991
ApaLI GTGCAC 2 cut(s) 668, 1112
ApeKI GCWGC 4 cut(s) 842, 1026, 1250, 1334
ApoI RAATTY 1 cut(s) 1313
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 809, 991
AsuHPI GGTGA 3 cut(s) 1043, 1045, 1190
AvaI CYCGRG 1 cut(s) 988
AvaII GGWCC 1 cut(s) 809
BaeGI GKGCMC 2 cut(s) 672, 1116
BalI TGGCCA 1 cut(s) 851
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 4 cut(s) 672, 1116, 1235, 1454
BbvCI CCTCAGC 1 cut(s) 1260
BbvI GCAGC 4 cut(s) 829, 1013, 1262, 1346
BccI CCATC 2 cut(s) 544, 1004
BciT130I CCWGG 3 cut(s) 154, 816, 1098
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 3 cut(s) 831, 1076, 1462
BfmI CTRYAG 2 cut(s) 1248, 1254
BfoI RGCGCY 1 cut(s) 430
BfrI CTTAAG 1 cut(s) 710
BglII AGATCT 1 cut(s) 661
BisI GCNGC 4 cut(s) 843, 1027, 1251, 1335
BlsI GCNGC 4 cut(s) 844, 1028, 1252, 1336
Bme1390I CCNGG 3 cut(s) 154, 816, 1098
Bme18I GGWCC 1 cut(s) 809
BmeT110I CYCGRG 1 cut(s) 988
BmgBI CACGTC 1 cut(s) 1111
BmgT120I GGNCC 2 cut(s) 809, 991
BmiI GGNNCC 3 cut(s) 258, 298, 702
BmrFI CCNGG 3 cut(s) 154, 816, 1098
BmsI GCATC 1 cut(s) 1169
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 767
Bpu10I CCTNAGC 3 cut(s) 579, 1156, 1260
BpuEI CTTGAG 1 cut(s) 845
BsaJI CCNNGG 5 cut(s) 152, 153, 292, 1171, 1374
BsaWI WCCGGW 2 cut(s) 183, 420
Bsc4I CCNNNNNNNGG 3 cut(s) 821, 919, 1207
Bse118I RCCGGY 1 cut(s) 345
Bse1I ACTGG 2 cut(s) 253, 826
Bse3DI GCAATG 1 cut(s) 702
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 3 cut(s) 154, 816, 1098
BseDI CCNNGG 5 cut(s) 152, 153, 292, 1171, 1374
BseGI GGATG 4 cut(s) 111, 452, 1116, 1444
BseLI CCNNNNNNNGG 3 cut(s) 821, 919, 1207
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 5 cut(s) 90, 323, 593, 905, 1251
BseNI ACTGG 2 cut(s) 253, 826
BseRI GAGGAG 4 cut(s) 195, 766, 1391, 1415
BseSI GKGCMC 2 cut(s) 672, 1116
BseXI GCAGC 4 cut(s) 829, 1013, 1262, 1346
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 4 cut(s) 41, 384, 851, 993
BsiHKAI GWGCWC 4 cut(s) 672, 1116, 1235, 1454
BsiHKCI CYCGRG 1 cut(s) 988
BsiSI CCGG 3 cut(s) 184, 346, 421
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 821, 919, 1207
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 1176
BsnI GGCC 4 cut(s) 41, 384, 851, 993
BsoBI CYCGRG 1 cut(s) 988
Bsp1286I GDGCHC 5 cut(s) 261, 672, 1116, 1235, 1454
Bsp13I TCCGGA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 161, 217, 661
BspACI CCGC 1 cut(s) 1029
BspANI GGCC 4 cut(s) 41, 384, 851, 993
BspCNI CTCAG 5 cut(s) 89, 324, 592, 906, 1252
BspEI TCCGGA 1 cut(s) 183
BspHI TCATGA 1 cut(s) 1180
BspLI GGNNCC 3 cut(s) 258, 298, 702
BspMAI CTGCAG 1 cut(s) 1252
BspQI GCTCTTC 1 cut(s) 1296
BspTI CTTAAG 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 1 cut(s) 345
BsrI ACTGG 2 cut(s) 253, 826
BssAI RCCGGY 1 cut(s) 345
BssECI CCNNGG 5 cut(s) 152, 153, 292, 1171, 1374
BssMI GATC 3 cut(s) 161, 217, 661
BssT1I CCWWGG 1 cut(s) 1171
Bst2UI CCWGG 3 cut(s) 154, 816, 1098
Bst4CI ACNGT 3 cut(s) 470, 506, 691
Bst6I CTCTTC 4 cut(s) 486, 1268, 1296, 1392
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 1458
BstDEI CTNAG 7 cut(s) 76, 332, 579, 914, 1156, 1260, 1389
BstF5I GGATG 4 cut(s) 111, 452, 1116, 1444
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 3 cut(s) 164, 220, 664
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 3 cut(s) 161, 217, 661
BstMWI GCNNNNNNNGC 5 cut(s) 424, 848, 1256, 1418, 1458
BstNI CCWGG 3 cut(s) 154, 816, 1098
BstSCI CCNGG 3 cut(s) 152, 814, 1096
BstSFI CTRYAG 2 cut(s) 1248, 1254
BstSLI GKGCMC 2 cut(s) 672, 1116
BstV1I GCAGC 4 cut(s) 829, 1013, 1262, 1346
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 4 cut(s) 41, 384, 851, 993
BtrI CACGTC 1 cut(s) 1111
BtsCI GGATG 4 cut(s) 111, 452, 1116, 1444
BtsIMutI CAGTG 3 cut(s) 42, 246, 696
CciI TCATGA 1 cut(s) 1180
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 809, 991
CseI GACGC 2 cut(s) 311, 1082
CviAII CATG 4 cut(s) 253, 783, 1023, 1181
DdeI CTNAG 7 cut(s) 76, 332, 579, 914, 1156, 1260, 1389
DpnI GATC 3 cut(s) 163, 219, 663
DpnII GATC 3 cut(s) 161, 217, 661
EaeI YGGCCR 1 cut(s) 849
Eam1104I CTCTTC 4 cut(s) 486, 1268, 1296, 1392
EarI CTCTTC 4 cut(s) 486, 1268, 1296, 1392
Eco130I CCWWGG 1 cut(s) 1171
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 809
Eco88I CYCGRG 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 152, 814, 1096
EcoT14I CCWWGG 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 1171
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 4 cut(s) 256, 786, 1026, 1184
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 294
FatI CATG 4 cut(s) 252, 782, 1022, 1180
FauNDI CATATG 1 cut(s) 24
FblI GTMKAC 2 cut(s) 288, 932
Fnu4HI GCNGC 4 cut(s) 843, 1027, 1251, 1335
FokI GGATG 4 cut(s) 118, 439, 1103, 1451
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 843, 1027, 1251, 1335
FspBI CTAG 3 cut(s) 831, 1076, 1462
GlaI GCGC 1 cut(s) 428
GluI GCNGC 4 cut(s) 843, 1027, 1251, 1335
GsuI CTGGAG 1 cut(s) 767
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 4 cut(s) 41, 384, 851, 993
HapII CCGG 3 cut(s) 184, 346, 421
HgaI GACGC 2 cut(s) 311, 1082
HhaI GCGC 1 cut(s) 429
Hin1II CATG 4 cut(s) 256, 786, 1026, 1184
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 3 cut(s) 617, 1219, 1419
HinfI GANTC 4 cut(s) 554, 587, 1146, 1429
HpaI GTTAAC 1 cut(s) 519
HpaII CCGG 3 cut(s) 184, 346, 421
HphI GGTGA 3 cut(s) 1043, 1045, 1190
Hpy166II GTNNAC 7 cut(s) 289, 519, 670, 812, 933, 1053, 1114
Hpy188I TCNGA 5 cut(s) 55, 296, 316, 910, 1151
Hpy188III TCNNGA 6 cut(s) 184, 326, 746, 1181, 1298, 1426
Hpy8I GTNNAC 7 cut(s) 289, 519, 670, 812, 933, 1053, 1114
HpyAV CCTTC 6 cut(s) 271, 763, 772, 912, 1324, 1400
HpyCH4III ACNGT 3 cut(s) 470, 506, 691
HpyCH4IV ACGT 1 cut(s) 1110
HpyCH4V TGCA 7 cut(s) 119, 670, 975, 1085, 1114, 1134, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 424, 848, 1256, 1418, 1458
HpyF3I CTNAG 7 cut(s) 76, 332, 579, 914, 1156, 1260, 1389
HpySE526I ACGT 1 cut(s) 1110
Hsp92II CATG 4 cut(s) 256, 786, 1026, 1184
HspAI GCGC 1 cut(s) 427
Kpn2I TCCGGA 1 cut(s) 183
KspAI GTTAAC 1 cut(s) 519
Kzo9I GATC 3 cut(s) 161, 217, 661
LguI GCTCTTC 1 cut(s) 1296
LmnI GCTCC 4 cut(s) 256, 296, 423, 883
Lsp1109I GCAGC 4 cut(s) 829, 1013, 1262, 1346
LweI GCATC 1 cut(s) 1169
MaeI CTAG 3 cut(s) 831, 1076, 1462
MaeII ACGT 1 cut(s) 1110
MaeIII GTNAC 1 cut(s) 1240
MalI GATC 3 cut(s) 163, 219, 663
MboI GATC 3 cut(s) 161, 217, 661
MboII GAAGA 7 cut(s) 364, 500, 503, 636, 1285, 1313, 1409
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 5 cut(s) 261, 672, 1116, 1235, 1454
MlsI TGGCCA 1 cut(s) 851
MluCI AATT 6 cut(s) 758, 837, 853, 1044, 1212, 1313
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 2 cut(s) 548, 1423
Mox20I TGGCCA 1 cut(s) 851
MroI TCCGGA 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 851
MseI TTAA 6 cut(s) 414, 518, 594, 711, 836, 1223
MslI CAYNNNNRTG 3 cut(s) 251, 504, 1203
Msp20I TGGCCA 1 cut(s) 851
MspA1I CMGCKG 1 cut(s) 1253
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 3 cut(s) 184, 346, 421
MspR9I CCNGG 3 cut(s) 154, 816, 1098
Mva1269I GAATGC 1 cut(s) 1176
MvaI CCWGG 3 cut(s) 154, 816, 1098
MwoI GCNNNNNNNGC 5 cut(s) 424, 848, 1256, 1418, 1458
NdeI CATATG 1 cut(s) 24
NdeII GATC 3 cut(s) 161, 217, 661
NlaIII CATG 4 cut(s) 256, 786, 1026, 1184
NlaIV GGNNCC 3 cut(s) 258, 298, 702
NmuCI GTSAC 1 cut(s) 1240
OliI CACNNNNGTG 1 cut(s) 1203
PagI TCATGA 1 cut(s) 1180
PasI CCCWGGG 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 1296
PctI GAATGC 1 cut(s) 1176
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 587, 1146
PkrI GCNGC 4 cut(s) 844, 1028, 1252, 1336
PleI GAGTC 2 cut(s) 548, 1423
PpsI GAGTC 2 cut(s) 548, 1423
Psp6I CCWGG 3 cut(s) 152, 814, 1096
PspGI CCWGG 3 cut(s) 152, 814, 1096
PspN4I GGNNCC 3 cut(s) 258, 298, 702
PspPI GGNCC 2 cut(s) 809, 991
PsrI GAACNNNNNNTAC 2 cut(s) 1278, 1310
PstI CTGCAG 1 cut(s) 1252
PsuI RGATCY 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 1253
RseI CAYNNNNRTG 3 cut(s) 251, 504, 1203
SapI GCTCTTC 1 cut(s) 1296
SaqAI TTAA 6 cut(s) 414, 518, 594, 711, 836, 1223
SatI GCNGC 4 cut(s) 843, 1027, 1251, 1335
Sau3AI GATC 3 cut(s) 161, 217, 661
Sau96I GGNCC 2 cut(s) 809, 991
SchI GAGTC 2 cut(s) 548, 1423
ScrFI CCNGG 3 cut(s) 154, 816, 1098
SduI GDGCHC 5 cut(s) 261, 672, 1116, 1235, 1454
SfaNI GCATC 1 cut(s) 1169
SfcI CTRYAG 2 cut(s) 1248, 1254
SinI GGWCC 1 cut(s) 809
SmiMI CAYNNNNRTG 3 cut(s) 251, 504, 1203
SmlI CTYRAG 2 cut(s) 710, 860
SmoI CTYRAG 2 cut(s) 710, 860
Sse9I AATT 6 cut(s) 758, 837, 853, 1044, 1212, 1313
SsiI CCGC 1 cut(s) 1029
SspMI CTAG 3 cut(s) 831, 1076, 1462
StyD4I CCNGG 3 cut(s) 152, 814, 1096
StyI CCWWGG 1 cut(s) 1171
TaaI ACNGT 3 cut(s) 470, 506, 691
TaiI ACGT 1 cut(s) 1113
TaqI TCGA 3 cut(s) 176, 327, 1102
TaqII GACCGA 1 cut(s) 1388
TasI AATT 6 cut(s) 758, 837, 853, 1044, 1212, 1313
TfiI GAWTC 2 cut(s) 587, 1146
Tru1I TTAA 6 cut(s) 414, 518, 594, 711, 836, 1223
Tru9I TTAA 6 cut(s) 414, 518, 594, 711, 836, 1223
TscAI CASTG 3 cut(s) 42, 253, 696
TseFI GTSAC 1 cut(s) 1240
TseI GCWGC 4 cut(s) 842, 1026, 1250, 1334
Tsp45I GTSAC 1 cut(s) 1240
TspDTI ATGAA 4 cut(s) 501, 1169, 1197, 1286
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 3 cut(s) 42, 253, 696
Vha464I CTTAAG 1 cut(s) 710
VneI GTGCAC 2 cut(s) 668, 1112
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 1 cut(s) 1313
XmiI GTMKAC 2 cut(s) 288, 932
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 831, 1076, 1462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.