Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

12500053 .. 12501160

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG145000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTTCCTCTCAATCCCAAACATATGCCTAAATCAGTGGCCTCCCTAATATCAGACCATGCTTCCTCCCTAATCTCAGGCTATGCTTCCATTACAGCAATAGGGATGTTGTTCCGTGCAGTTGTCAAAGAACTCAAAGACCTCATTCCCCCCTGGGTTAGATCATACATATACTCGAAACTCCGGAACTACTTCTTTAGACCTCCTCCCCCAAATAATCACCTAACATTTGTCATAAAAAAGAACACTGGCATGGAGCCCAACGAGGTCTATAAGAAGGTAGAGGTCTACCTCGGAGCCAAGATTAGTCCCTCCGATATGCGTCTCGAACTGAGCAAAACAAACCGGCAGAAGACAATCAGCCTTGCCATTGAAAAGAGAGGCCAAGTTGTCAAGGACACCTTTGATGACATTAAGCTCCAGTGGCGCTACATAGCCAAATCAAAGAAGTCATCCAAAACCAACAACAGTCCTGCTGATGATGATGAAGAAGAGAAATATAACTGTGGCTTTGAGTTAACTTTCAATAAGAAACACAAAGCCAAAGCATTGAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

186

Amino Acids

21.37

Weight (kDa)

9.78

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	49 - 145	2.7e-19	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	374, 526
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	2 cut(s)	39, 382
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	258, 298
BmrFI	CCNGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	404
BsaJI	CCNNGG	3 cut(s)	152, 153, 292
BsaWI	WCCGGW	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	253, 421
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	152, 153, 292
BseGI	GGATG	2 cut(s)	111, 452
BseMII	CTCAG	2 cut(s)	90, 323
BseNI	ACTGG	2 cut(s)	253, 421
BseRI	GAGGAG	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	41, 384
BsiSI	CCGG	2 cut(s)	184, 346
BslFI	GGGAC	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	41, 384
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	41, 384
BspCNI	CTCAG	2 cut(s)	89, 324
BspEI	TCCGGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	258, 298
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	253, 421
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	152, 153, 292
BssMI	GATC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	470, 506
Bst6I	CTCTTC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	76, 332
BstF5I	GGATG	2 cut(s)	111, 452
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	41, 384
BtsCI	GGATG	2 cut(s)	111, 452
BtsIMutI	CAGTG	3 cut(s)	42, 246, 428
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	345
CseI	GACGC	1 cut(s)	311
CviAII	CATG	2 cut(s)	59, 253
DdeI	CTNAG	2 cut(s)	76, 332
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	2 cut(s)	62, 256
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	58, 252
FauNDI	CATATG	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	2 cut(s)	118, 439
FriOI	GRGCYC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	41, 384
HapII	CCGG	2 cut(s)	184, 346
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	62, 256
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HpaI	GTTAAC	1 cut(s)	519
HpaII	CCGG	2 cut(s)	184, 346
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	289, 519
Hpy188I	TCNGA	3 cut(s)	55, 296, 316
Hpy188III	TCNNGA	2 cut(s)	184, 326
Hpy8I	GTNNAC	2 cut(s)	289, 519
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	470, 506
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	2 cut(s)	76, 332
Hsp92II	CATG	2 cut(s)	62, 256
HspAI	GCGC	1 cut(s)	427
Kpn2I	TCCGGA	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	256, 296, 423
LpnPI	CCDG	8 cut(s)	63, 139, 166, 197, 234, 359, 434, 486
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	364, 500, 503
MhlI	GDGCHC	1 cut(s)	261
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	414, 518
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	184, 346
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	424
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	2 cut(s)	62, 256
NlaIV	GGNNCC	2 cut(s)	258, 298
PasI	CCCWGGG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	258, 298
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	414, 518
Sau3AI	GATC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	470, 506
TaqI	TCGA	2 cut(s)	176, 327
Tru1I	TTAA	2 cut(s)	414, 518
Tru9I	TTAA	2 cut(s)	414, 518
TscAI	CASTG	3 cut(s)	42, 253, 428
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	42, 253, 428
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.