Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

12490844 .. 12494902

Gene Structure 4059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTGAACACAATGTTTCCTCTCAGTCCCAAAAATATACCTACATCAGTATCCTCACTGTTCTCAGCCTATGCCTCCTTTACTGCATTCATAATGTTGTTCCGTGCCATTGTCAATGAACTCAAAGATCTCATCCCCCTTGGAGTTCGATCATACATATACTCTAAATTTCGGTACTACTTCTTTACTCATCCCTCTGATGATGACCTAACTCTTGTCATCAACAAGCACTTTGGCATGGCGCCTAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTAGTCCTTCCGACAAGCGTCTGATACTGAGCAAGACGAATCAACAGAAGACTGTCACCCTCGCCATTGAAAAAAGAGGCCAAGTTGTCAGTGATACCTTTGATGACATTGACCTTCGGTGGAGTTACGTGGCCAAACCAAAGAAGTCCAAATCCAAGCAGAGTTCTGCTGGAGATGATGAAGAAGAAGTAGAGTGGTGCTTTGAGTTAATGTTCAATGAGAAACACAAAGCCAAATTCCTCAAACAAAAGAAGGTCAAGAATGATAAAGAGAAGTTAAAAAAGGCTAAAAAAGCCGATGAGGAAGGGACTAAGAAAGCAGAGAAGCAGGAAAGGGAGGAGGATGCAAACAAAAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

216

Amino Acids

24.96

Weight (kDa)

9.14

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	45 - 140	4.1e-18	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	167, 524
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	359, 505
AoxI	GGCC	2 cut(s)	367, 420
ApoI	RAATTY	2 cut(s)	167, 524
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	337
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	243, 283
BmsI	GCATC	1 cut(s)	622
BoxI	GACNNNNGTC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	139, 277
BseDI	CCNNGG	2 cut(s)	139, 277
BseGI	GGATG	3 cut(s)	132, 190, 637
BseMII	CTCAG	3 cut(s)	37, 78, 308
BseRI	GAGGAG	1 cut(s)	641
BshFI	GGCC	2 cut(s)	369, 422
BshNI	GGYRCC	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	12, 610
BsmFI	GGGAC	2 cut(s)	12, 610
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	369, 422
Bsp143I	GATC	2 cut(s)	127, 149
BspANI	GGCC	2 cut(s)	369, 422
BspCNI	CTCAG	3 cut(s)	36, 77, 309
BspLI	GGNNCC	2 cut(s)	243, 283
BspT107I	GGYRCC	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	139, 277
BssMI	GATC	2 cut(s)	127, 149
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	2 cut(s)	139, 277
Bst4CI	ACNGT	2 cut(s)	60, 343
BstACI	GRCGYC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	418
BstDEI	CTNAG	4 cut(s)	23, 64, 317, 600
BstF5I	GGATG	3 cut(s)	132, 190, 637
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	130, 152
BstMBI	GATC	2 cut(s)	127, 149
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstPAI	GACNNNNGTC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	369, 422
BtsCI	GGATG	3 cut(s)	132, 190, 637
BtsIMutI	CAGTG	2 cut(s)	56, 385
CfoI	GCGC	1 cut(s)	244
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	7 cut(s)	68, 284, 369, 422, 521, 575, 584
CviKI_1	RGCY	7 cut(s)	68, 284, 369, 422, 521, 575, 584
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	4 cut(s)	23, 64, 317, 600
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	2 cut(s)	129, 151
DpnII	GATC	2 cut(s)	127, 149
EaeI	YGGCCR	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	139, 277
EcoT14I	CCWWGG	2 cut(s)	139, 277
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	139, 277
FaeI	CATG	1 cut(s)	241
FaiI	YATR	8 cut(s)	38, 72, 92, 154, 158, 160, 239, 258
FaqI	GGGAC	2 cut(s)	12, 610
FatI	CATG	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	273
FokI	GGATG	3 cut(s)	119, 177, 644
FspBI	CTAG	1 cut(s)	649
GlaI	GCGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	369, 422
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	199, 301, 312
Hpy188III	TCNNGA	1 cut(s)	547
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	5 cut(s)	256, 306, 413, 535, 587
HpyCH4III	ACNGT	2 cut(s)	60, 343
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	86, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	4 cut(s)	23, 64, 317, 600
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	242
KasI	GGCGCC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	127, 149
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	2 cut(s)	444, 602
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	1 cut(s)	649
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	343, 413
MalI	GATC	2 cut(s)	129, 151
MboI	GATC	2 cut(s)	127, 149
MboII	GAAGA	3 cut(s)	349, 482, 485
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	2 cut(s)	167, 524
MluNI	TGGCCA	1 cut(s)	422
Mly113I	GGCGCC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	2 cut(s)	497, 566
Msp20I	TGGCCA	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	581
NarI	GGCGCC	1 cut(s)	242
NdeII	GATC	2 cut(s)	127, 149
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	243, 283
NmuCI	GTSAC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	418
PshAI	GACNNNNGTC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	243, 283
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	497, 566
Sau3AI	GATC	2 cut(s)	127, 149
SfaNI	GCATC	1 cut(s)	622
SfoI	GGCGCC	1 cut(s)	243
Sse9I	AATT	2 cut(s)	167, 524
SspDI	GGCGCC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	649
StyI	CCWWGG	2 cut(s)	139, 277
TaaI	ACNGT	2 cut(s)	60, 343
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	167, 524
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	497, 566
Tru9I	TTAA	2 cut(s)	497, 566
TscAI	CASTG	2 cut(s)	63, 385
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	79, 132, 483
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	63, 385
XapI	RAATTY	2 cut(s)	167, 524
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.