Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001659.1

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

52837 .. 53535

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001659.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgtttcctctcagtcccaaaaatatacatacaccagtatcctcagtgttctcagcctatgcctcctttactgcattcataatgttgttccgtgccattgtcaatgaactcaaagatctcatccccctcggggttcgatcatacatatactctaaattttggtactacttctttactcatccctctgatgatgacctaactcttgtcatcaacaagcactctggcatggtgcctaacgaggtctatgagaatgtagaggtctaccttggagccaagattagtccttccgacaagcgtctgatactgatgagcaagacgaatcaactgaagactgtcaccctcgccattgaaaaaagaggccaagttgtcagtgatacctttgatgacattgacctttggtggagttacgtggccaaaccaaagaagtccaaatccaagcagagttctactggagatgatgaagaagaagtagagtggtgctttgagttaatgttcaatgagaaacacaaagccaaaatgatagactcctacattccctatgtgtttactcaggccgaatccattaaacaaggggagaaagctctaaagcttcattgctctggaagggatcattatgggacttctaaaagttgcatagatcttgtacaccctgcaacttttgagacaatagcaatggattcagaactaaaaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

232

Amino Acids

26.62

Weight (kDa)

6.66

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	164, 645
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	350, 496
AluBI	AGCT	2 cut(s)	581, 589
AluI	AGCT	2 cut(s)	581, 589
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	3 cut(s)	358, 411, 552
ApoI	RAATTY	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BalI	TGGCCA	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	49
BglII	AGATCT	2 cut(s)	115, 637
BmeT110I	CYCGRG	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	231, 271
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	127, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	35, 454
Bse3DI	GCAATG	2 cut(s)	592, 678
BseDI	CCNNGG	2 cut(s)	127, 265
BseGI	GGATG	2 cut(s)	120, 178
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	592, 678
BseMII	CTCAG	4 cut(s)	25, 57, 66, 563
BseNI	ACTGG	2 cut(s)	35, 454
BshFI	GGCC	3 cut(s)	360, 413, 554
BshNI	GGYRCC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	360, 413, 554
BsoBI	CYCGRG	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	4 cut(s)	115, 137, 607, 637
BspANI	GGCC	3 cut(s)	360, 413, 554
BspCNI	CTCAG	4 cut(s)	24, 56, 65, 562
BspLI	GGNNCC	2 cut(s)	231, 271
BspPI	GGATC	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	592, 678
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	35, 454
BssECI	CCNNGG	2 cut(s)	127, 265
BssMI	GATC	4 cut(s)	115, 137, 607, 637
BssT1I	CCWWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	334
BstAUI	TGTACA	1 cut(s)	643
BstBAI	YACGTR	1 cut(s)	409
BstDEI	CTNAG	4 cut(s)	11, 43, 52, 549
BstF5I	GGATG	2 cut(s)	120, 178
BstKTI	GATC	4 cut(s)	118, 140, 610, 640
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	115, 137, 607, 637
BstPAI	GACNNNNGTC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	115, 637
BstYI	RGATCY	2 cut(s)	115, 637
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	360, 413, 554
BtsCI	GGATG	2 cut(s)	120, 178
BtsIMutI	CAGTG	2 cut(s)	51, 376
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	163, 644
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	8 cut(s)	56, 272, 360, 413, 512, 554, 581, 589
CviKI_1	RGCY	8 cut(s)	56, 272, 360, 413, 512, 554, 581, 589
CviQI	GTAC	2 cut(s)	163, 644
DdeI	CTNAG	4 cut(s)	11, 43, 52, 549
DpnI	GATC	4 cut(s)	117, 139, 609, 639
DpnII	GATC	4 cut(s)	115, 137, 607, 637
EaeI	YGGCCR	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	229
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	261
FokI	GGATG	2 cut(s)	107, 165
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	360, 413, 554
HgaI	GACGC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	4 cut(s)	319, 524, 557, 677
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	262, 546, 646
Hpy188I	TCNGA	4 cut(s)	187, 289, 300, 682
Hpy188III	TCNNGA	1 cut(s)	600
Hpy8I	GTNNAC	3 cut(s)	262, 546, 646
HpyAV	CCTTC	2 cut(s)	294, 597
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	74, 633, 653
HpyF3I	CTNAG	4 cut(s)	11, 43, 52, 549
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	115, 137, 607, 637
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	6 cut(s)	48, 207, 435, 536, 585, 663
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	334, 404
MalI	GATC	4 cut(s)	117, 139, 609, 639
MboI	GATC	4 cut(s)	115, 137, 607, 637
MboII	GAAGA	3 cut(s)	340, 473, 476
MflI	RGATCY	2 cut(s)	115, 637
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	18, 52, 73, 137, 193, 232, 250, 350, 350
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	2 cut(s)	488, 564
Msp20I	TGGCCA	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	74
NdeII	GATC	4 cut(s)	115, 137, 607, 637
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	2 cut(s)	231, 271
NmuCI	GTSAC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	319, 557, 677
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	409
PshAI	GACNNNNGTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	231, 271
PsuI	RGATCY	2 cut(s)	115, 637
RsaI	GTAC	2 cut(s)	164, 645
RsaNI	GTAC	2 cut(s)	163, 644
SaqAI	TTAA	2 cut(s)	488, 564
Sau3AI	GATC	4 cut(s)	115, 137, 607, 637
SchI	GAGTC	1 cut(s)	518
SetI	ASST	9 cut(s)	198, 243, 261, 267, 380, 396, 411, 583, 591
Sse9I	AATT	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	155
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	319, 557, 677
Tru1I	TTAA	2 cut(s)	488, 564
Tru9I	TTAA	2 cut(s)	488, 564
TscAI	CASTG	2 cut(s)	51, 376
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	67, 120, 474, 581
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	51, 376
XapI	RAATTY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.