Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

12201509 .. 12204895

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG145300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCTGAACACAATGTTTCCTCTCAGTCCCAAAAATATACCTACATCAGTATCCTCACTGTTCTCAGCCTATGCCTCCTTTACTGCATTCATAATGTTGTTCCGTGCCATTGTCAATGAACTCAAAGATCTCATCCCCCTTGGGGTTCGATCATACATATACTCTAAATTTCGGTACTACTTCTTTACTCATCCCTCTGATGATGACCTAACTCTTGTCATCAACAAGCACTTTGGCATGGCGCCTAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTAGTCCTTCCGACAAGCATCTGATACTGAGCAAGACGAATCAACAGAAGACTGTCACCCTCGCCATTGAAAAAAGAGGCCAAGTTGTCAGTGATACCTTTGATGGCATTGACCTTCGGTGGAGTTACGTGGCCAAACCAAAGAAGTCCAAATCCAAGCAGAGTTCTGCTGGAGATGATGAAGAAGTAGAGTGGTGCTTTGAGTTAATGTTCAATGAGAAACACAAAGCCAAAGTGATAGACTCCTACATTCCCTATGTGTTTACACAGGCCGAATCCATTAAACAAGGGGAGAAAGCTCTAAAGCTTCATTGCTCTGGTAGGGATCATTATGGGACTTCTAAAAGTTGCATAGATCTTGTACACCCTACAACTTTTGAGACAATAGCAATCGATTCAGAACTTAAAAAAATGATCATAGATGACTTGGATATGTTCGTGAAGAGGAGGGAATTTTATAAGAAGGTTGGGAAGGCTTGGAAAAGAGGTTATTTGTTATATGGTCCACCTGGTACTGGAAAATCTAGCTTGATTGCTGCCATGGCTAATTATCTCCAGTTTGATATACATGATTTAGAGCTTTCTGGTATTCGTGACAACTCTGACTTGAGAAGGGTGTTGTTGTCTACTACAAATCGTTCTATTCTGGTTGTTGAGGACATTGATTGCAGCGTGAAAATAAAAAATCGGGAATCAGCTCAGCCTTCCAAACCCTCTAATAGCCTAGATTGTAGTCCAACAAGCAAGGTCAGTACTGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

350

Amino Acids

39.68

Weight (kDa)

8.7

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	45 - 140	4.6e-18	Domain associated at C-terminal with AAA
AAA	PF00004	260 - 330	1e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	273, 914
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	3 cut(s)	167, 740, 1047
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	4 cut(s)	176, 651, 802, 1042
AfiI	CCNNNNNNNGG	2 cut(s)	142, 803
AgsI	TTSAA	2 cut(s)	359, 502
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	5 cut(s)	587, 595, 816, 868, 986
AluI	AGCT	5 cut(s)	587, 595, 816, 868, 986
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	3 cut(s)	367, 420, 558
ApeKI	GCWGC	2 cut(s)	824, 957
ApoI	RAATTY	3 cut(s)	167, 740, 1047
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	791
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	791
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	811, 969
BccI	CCATC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	798
BciVI	GTATCC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	813, 1013
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	61
BglII	AGATCT	2 cut(s)	127, 643
BisI	GCNGC	2 cut(s)	825, 958
BlpI	GCTNAGC	1 cut(s)	987
BlsI	GCNGC	2 cut(s)	826, 959
BmcAI	AGTACT	1 cut(s)	1042
Bme1390I	CCNGG	1 cut(s)	798
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	791
BmiI	GGNNCC	2 cut(s)	243, 283
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	344
BpmI	CTGGAG	2 cut(s)	480, 827
Bpu1102I	GCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	916
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	139, 277, 828
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 803
Bse1I	ACTGG	2 cut(s)	808, 844
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	798
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	139, 277, 828
BseGI	GGATG	2 cut(s)	132, 190
BseLI	CCNNNNNNNGG	2 cut(s)	142, 803
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	4 cut(s)	37, 78, 308, 1001
BseNI	ACTGG	2 cut(s)	808, 844
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	811, 969
BshFI	GGCC	3 cut(s)	369, 422, 560
BshNI	GGYRCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	681
BslFI	GGGAC	2 cut(s)	12, 637
BslI	CCNNNNNNNGG	2 cut(s)	142, 803
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	2 cut(s)	12, 637
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	369, 422, 560
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	5 cut(s)	127, 149, 613, 643, 702
Bsp1720I	GCTNAGC	1 cut(s)	987
Bsp19I	CCATGG	1 cut(s)	828
BspANI	GGCC	3 cut(s)	369, 422, 560
BspCNI	CTCAG	4 cut(s)	36, 77, 309, 1000
BspDI	ATCGAT	1 cut(s)	681
BspLI	GGNNCC	2 cut(s)	243, 283
BspPI	GGATC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	808, 844
BssECI	CCNNGG	3 cut(s)	139, 277, 828
BssMI	GATC	5 cut(s)	127, 149, 613, 643, 702
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	3 cut(s)	139, 277, 828
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	2 cut(s)	60, 343
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	418
BstDEI	CTNAG	4 cut(s)	23, 64, 317, 987
BstDSI	CCRYGG	1 cut(s)	828
BstF5I	GGATG	2 cut(s)	132, 190
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	5 cut(s)	130, 152, 616, 646, 705
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	5 cut(s)	127, 149, 613, 643, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	1 cut(s)	798
BstSCI	CCNGG	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	811, 969
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	127, 643
BstYI	RGATCY	2 cut(s)	127, 643
Bsu15I	ATCGAT	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	369, 422, 560
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	828
BtsCI	GGATG	2 cut(s)	132, 190
BtsIMutI	CAGTG	2 cut(s)	56, 385
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	791
ClaI	ATCGAT	1 cut(s)	681
CsiI	ACCWGGT	1 cut(s)	796
Csp6I	GTAC	4 cut(s)	175, 650, 801, 1041
CviAII	CATG	3 cut(s)	238, 829, 857
CviQI	GTAC	4 cut(s)	175, 650, 801, 1041
DdeI	CTNAG	4 cut(s)	23, 64, 317, 987
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	5 cut(s)	129, 151, 615, 645, 704
DpnII	GATC	5 cut(s)	127, 149, 613, 643, 702
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Eco130I	CCWWGG	3 cut(s)	139, 277, 828
Eco47I	GGWCC	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	796
EcoT14I	CCWWGG	3 cut(s)	139, 277, 828
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
ErhI	CCWWGG	3 cut(s)	139, 277, 828
FaeI	CATG	3 cut(s)	241, 832, 860
FaqI	GGGAC	2 cut(s)	12, 637
FatI	CATG	3 cut(s)	237, 828, 856
FbaI	TGATCA	1 cut(s)	702
FblI	GTMKAC	2 cut(s)	273, 914
Fnu4HI	GCNGC	2 cut(s)	825, 958
FokI	GGATG	2 cut(s)	119, 177
Fsp4HI	GCNGC	2 cut(s)	825, 958
FspBI	CTAG	2 cut(s)	813, 1013
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	825, 958
GsuI	CTGGAG	2 cut(s)	480, 827
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	369, 422, 560
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	241, 832, 860
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	5 cut(s)	328, 530, 563, 683, 980
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	5 cut(s)	274, 552, 652, 794, 915
Hpy188I	TCNGA	5 cut(s)	199, 301, 312, 688, 892
Hpy188III	TCNNGA	3 cut(s)	727, 881, 977
Hpy8I	GTNNAC	5 cut(s)	274, 552, 652, 794, 915
HpyAV	CCTTC	7 cut(s)	256, 306, 413, 745, 754, 894, 1002
HpyCH4III	ACNGT	2 cut(s)	60, 343
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	86, 639, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	4 cut(s)	23, 64, 317, 987
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	241, 832, 860
HspAI	GCGC	1 cut(s)	242
KasI	GGCGCC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	127, 149, 613, 643, 702
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	9 cut(s)	444, 542, 591, 783, 789, 810, 857, 858, 920
Lsp1109I	GCAGC	2 cut(s)	811, 969
LweI	GCATC	1 cut(s)	316
MabI	ACCWGGT	1 cut(s)	796
MaeI	CTAG	2 cut(s)	813, 1013
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	343, 413, 881
MalI	GATC	5 cut(s)	129, 151, 615, 645, 704
MboI	GATC	5 cut(s)	127, 149, 613, 643, 702
MboII	GAAGA	3 cut(s)	349, 482, 742
MflI	RGATCY	2 cut(s)	127, 643
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	4 cut(s)	167, 740, 835, 1047
MluNI	TGGCCA	1 cut(s)	422
Mly113I	GGCGCC	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	324, 1049
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	4 cut(s)	494, 570, 693, 1051
Msp20I	TGGCCA	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	798
MwoI	GCNNNNNNNGC	1 cut(s)	830
NarI	GGCGCC	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	828
NdeII	GATC	5 cut(s)	127, 149, 613, 643, 702
NlaIII	CATG	3 cut(s)	241, 832, 860
NlaIV	GGNNCC	2 cut(s)	243, 283
NmuCI	GTSAC	2 cut(s)	343, 881
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	328, 563, 683, 980
PkrI	GCNGC	2 cut(s)	826, 959
PleI	GAGTC	1 cut(s)	524
PluTI	GGCGCC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	2 cut(s)	243, 283
PspPI	GGNCC	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	127, 643
RsaI	GTAC	4 cut(s)	176, 651, 802, 1042
RsaNI	GTAC	4 cut(s)	175, 650, 801, 1041
SaqAI	TTAA	4 cut(s)	494, 570, 693, 1051
SatI	GCNGC	2 cut(s)	825, 958
Sau3AI	GATC	5 cut(s)	127, 149, 613, 643, 702
Sau96I	GGNCC	1 cut(s)	791
ScaI	AGTACT	1 cut(s)	1042
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	798
SexAI	ACCWGGT	1 cut(s)	796
SfaNI	GCATC	1 cut(s)	316
SfoI	GGCGCC	1 cut(s)	243
SinI	GGWCC	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	895
SmoI	CTYRAG	1 cut(s)	895
Sse9I	AATT	4 cut(s)	167, 740, 835, 1047
SspDI	GGCGCC	1 cut(s)	241
SspMI	CTAG	2 cut(s)	813, 1013
StyD4I	CCNGG	1 cut(s)	796
StyI	CCWWGG	3 cut(s)	139, 277, 828
TaaI	ACNGT	2 cut(s)	60, 343
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	148, 681
TasI	AATT	4 cut(s)	167, 740, 835, 1047
TatI	WGTACW	2 cut(s)	649, 1040
TfiI	GAWTC	4 cut(s)	328, 563, 683, 980
Tru1I	TTAA	4 cut(s)	494, 570, 693, 1051
Tru9I	TTAA	4 cut(s)	494, 570, 693, 1051
TscAI	CASTG	2 cut(s)	63, 385
TseFI	GTSAC	2 cut(s)	343, 881
TseI	GCWGC	2 cut(s)	824, 957
Tsp45I	GTSAC	2 cut(s)	343, 881
TspDTI	ATGAA	4 cut(s)	79, 132, 483, 587
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	63, 385
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	3 cut(s)	167, 740, 1047
XmiI	GTMKAC	2 cut(s)	273, 914
XspI	CTAG	2 cut(s)	813, 1013
ZrmI	AGTACT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.