Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Forward (+)

80113164 .. 80114029

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAACCAGAACTTAAGAAAATGATTATAGATGACTTGGATAGGTTTCTGGAGAGGAGAGAATTATATAAGAAGGTTGGGAAGGCATGGAAAAGAGGATATTTGTTATACGGTCCACCTGGAACTGGAAAGTCTAACTTAATTGCGGCCATAGCCAATTATCCCAAGTTTGATATATATGATTTGGAGCTTTCTAGTATTTTCAGCAACTCTGACCTGAGAAGGGTATTGTTGTCTACTACTAATCGTTCTATTGTGGTCATTGAGGATATTGATTGCAGTGTGAAGATCAACAATCGGGAAACAGCTATGTCATCTAAAACAGCAACACCCGGTTATCCTGCAAGCAAGTTCACACTCTTGGGCCTACTGAACTTCATAGATGGTCTGTGGTCATGCTGCGGTGATGAGAGAATAATTATCTTGACCACCAACCACAAGGACAAATTAGACCCTGCACTGTTGCATCCAGGTCGAATGGACGTGCACATTCACTTGTCATATTGCACTCCAAATGGATTCAGGACCTTAGCATCTAATTACCTTGGCATTCATGAAAGCAACCCTCATCACCTGTGTGGGGAAATTGAAAGCTTAATAGAGAGCACAGAGGTCACCCCTGCAGCCGTAGCTGAGGCGCTTATGAAGAGTGATGATGCGGATGTTGTTCTTGAAGGCTTGTCAAATTCGTCAAAGAGAAGAAGGCCGCAGATGATGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

240

Amino Acids

26.86

Weight (kDa)

6.39

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	34 - 167	2.7e-18	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	169 - 229	2.2e-19	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	236
AciI	CCGC	4 cut(s)	146, 402, 659, 707
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	685
AfiI	CCNNNNNNNGG	3 cut(s)	125, 223, 580
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	590, 674
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	118, 469
AleI	CACNNNNGTG	1 cut(s)	576
AluBI	AGCT	4 cut(s)	190, 308, 594, 632
AluI	AGCT	4 cut(s)	190, 308, 594, 632
Alw21I	GWGCWC	2 cut(s)	489, 608
Alw44I	GTGCAC	1 cut(s)	485
AoxI	GGCC	3 cut(s)	147, 364, 704
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	2 cut(s)	399, 623
ApoI	RAATTY	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	640
AspS9I	GGNCC	3 cut(s)	113, 364, 525
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	3 cut(s)	416, 563, 607
AvaII	GGWCC	2 cut(s)	113, 525
BaeGI	GKGCMC	1 cut(s)	489
Bbv12I	GWGCWC	2 cut(s)	489, 608
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	386, 635
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	120, 471
BcnI	CCSGG	1 cut(s)	333
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	641
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	4 cut(s)	147, 400, 624, 707
BlsI	GCNGC	4 cut(s)	148, 401, 625, 708
Bme1390I	CCNGG	3 cut(s)	120, 333, 471
Bme18I	GGWCC	2 cut(s)	113, 525
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	3 cut(s)	113, 364, 525
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	120, 333, 471
BmsI	GCATC	3 cut(s)	475, 542, 646
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	529, 633
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 223, 580
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	120, 471
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	466, 667
BseLI	CCNNNNNNNGG	3 cut(s)	125, 223, 580
BseMII	CTCAG	2 cut(s)	209, 624
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	2 cut(s)	386, 635
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	149, 366, 706
BsiHKAI	GWGCWC	2 cut(s)	489, 608
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	125, 223, 580
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	149, 366, 706
Bsp1286I	GDGCHC	2 cut(s)	489, 608
Bsp143I	GATC	1 cut(s)	288
BspACI	CCGC	4 cut(s)	146, 402, 659, 707
BspANI	GGCC	3 cut(s)	149, 366, 706
BspCNI	CTCAG	2 cut(s)	210, 625
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	625
BspTI	CTTAAG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	120, 471
Bst4CI	ACNGT	2 cut(s)	113, 462
Bst6I	CTCTTC	1 cut(s)	641
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	3 cut(s)	218, 529, 633
BstEII	GGTNACC	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	466, 667
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 629
BstNI	CCWGG	2 cut(s)	120, 471
BstPI	GGTNACC	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	118, 331, 469
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	386, 635
BsuRI	GGCC	3 cut(s)	149, 366, 706
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	466, 667
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	286, 458
Cac8I	GCNNGC	1 cut(s)	346
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	640
Cfr13I	GGNCC	3 cut(s)	113, 364, 525
CviAII	CATG	3 cut(s)	87, 396, 554
DdeI	CTNAG	3 cut(s)	218, 529, 633
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	113, 525
Eco91I	GGTNACC	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	118, 469
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	3 cut(s)	90, 399, 557
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	86, 395, 553
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	4 cut(s)	147, 400, 624, 707
FokI	GGATG	2 cut(s)	453, 674
Fsp4HI	GCNGC	4 cut(s)	147, 400, 624, 707
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	4 cut(s)	147, 400, 624, 707
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	3 cut(s)	149, 366, 706
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	3 cut(s)	90, 399, 557
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	416, 563, 607
Hpy166II	GTNNAC	4 cut(s)	116, 237, 354, 487
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	6 cut(s)	50, 299, 424, 523, 554, 671
Hpy8I	GTNNAC	4 cut(s)	116, 237, 354, 487
HpyAV	CCTTC	5 cut(s)	67, 76, 216, 668, 696
HpyCH4III	ACNGT	2 cut(s)	113, 462
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	7 cut(s)	279, 344, 458, 466, 487, 507, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 629
HpyF3I	CTNAG	3 cut(s)	218, 529, 633
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	90, 399, 557
HspAI	GCGC	1 cut(s)	638
Kzo9I	GATC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	386, 635
LweI	GCATC	3 cut(s)	475, 542, 646
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MboII	GAAGA	3 cut(s)	298, 658, 711
MhlI	GDGCHC	2 cut(s)	489, 608
MluCI	AATT	8 cut(s)	62, 141, 157, 417, 446, 538, 585, 685
MnlI	CCTC	6 cut(s)	48, 89, 259, 576, 604, 628
MseI	TTAA	4 cut(s)	15, 140, 596, 721
MslI	CAYNNNNRTG	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	3 cut(s)	120, 333, 471
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	120, 471
MwoI	GCNNNNNNNGC	2 cut(s)	152, 629
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	288
NlaIII	CATG	3 cut(s)	90, 399, 557
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	613
OliI	CACNNNNGTG	1 cut(s)	576
PagI	TCATGA	1 cut(s)	553
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	519
PkrI	GCNGC	4 cut(s)	148, 401, 625, 708
PpuMI	RGGWCCY	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	118, 469
PspEI	GGTNACC	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	118, 469
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	113, 364, 525
PspPPI	RGGWCCY	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	15, 140, 596, 721
SatI	GCNGC	4 cut(s)	147, 400, 624, 707
Sau3AI	GATC	1 cut(s)	288
Sau96I	GGNCC	3 cut(s)	113, 364, 525
ScrFI	CCNGG	3 cut(s)	120, 333, 471
SduI	GDGCHC	2 cut(s)	489, 608
SfaNI	GCATC	3 cut(s)	475, 542, 646
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	2 cut(s)	113, 525
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	8 cut(s)	62, 141, 157, 417, 446, 538, 585, 685
SsiI	CCGC	4 cut(s)	146, 402, 659, 707
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	118, 331, 469
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	113, 462
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	475
TasI	AATT	8 cut(s)	62, 141, 157, 417, 446, 538, 585, 685
TauI	GCSGC	2 cut(s)	149, 709
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	4 cut(s)	15, 140, 596, 721
Tru9I	TTAA	4 cut(s)	15, 140, 596, 721
TscAI	CASTG	2 cut(s)	286, 465
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	399, 623
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	367, 542, 570, 659
TspRI	CASTG	2 cut(s)	286, 465
Vha464I	CTTAAG	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	113, 525
XapI	RAATTY	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.