Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

12191725 .. 12194822

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGTTTCCTCTCAATCCCAACCACTTGCCCAAATCAGTGTCCTCCCTCTTCTCAGCCTACGCTTCCTTCACAGCATTCAAGTTCTTGATCCAGACCGTTGTCAATGAGCTCAAAGAGTTCATTCCCCCCTGGGTTCGATCATACATATACTCAAAGCTTCGAAAATACTTCTTCAAACCTCGCCCAAACGATAAGCTCACTCTTGTCATCAACAAGAACATCGGCATGGCGCCCAACGAAGTCTACGACAAGGTGGAGGTCTACCTCGGATCCAAGATTAGTCCCTCCGATTCGCGACTCGAACTGAGCAAGACGAGCAAGCAGAAGAGTGTCAGCCTCGCCATTGAGAAAAGAGGCCAAGATGTCCAGGACACATTCGATGACATTGACCTCCGGTGGACCTACGTGGCCAAATCATCAAAGAAGTGCAGACCCAATAAGTTCAGGCCTCCTAGTCCTGGTGATGATGGAGAAGAGGAATCTCACTACTGGAGCTTTGAGTTAAGTTTCGATAGGAAACACAGAGCCCAAGTGATAGACTCCTACATGCCCTATGTCCTTGCTCAAGCTGAGTCCATTAAACAAGGGGAAAGGGTTCTGAAGCTTCATAGCACCGGCAGGGAACAATATGGGCCATCCAAGAGTTGCATAGATCTCGTGCACCCTGCAACTTTCGAGACGATGGCAATGGATCCAGAACTCAAGAAGATGATTATAGATGACTTGGATAGGTTCGTCAAGAGAAGGGAGTTGTATAAGAAGGTTGGCAAGGCTTGGAAGAGAGGGTATTTGTTGTATGGTCCACCCGGTACTGGAAAATCGAGCTTGATTGCAGCCATGGCAAATTATCTCAAGTTTGATATATATGATCTGGAGCTTTCTAGCATTTACGGCGACTCTGAATTGAGGAGGGTTTTACTTTCTACATCAAATCGTTCTATTGTGGTCGTGGAGGACATTGATTGCAGTGTGCAAATCAAAAATCGGGAATCAGCTCAGCCTTCTAAAATCCCACCAACTCATCCAAGCAGGGACTGCAAGTTCACCCTATCGGGTCTACTGAACTTCATAGATGGTCTGTGGTCGTGCTGCGGCGATGAACGAATAATTGTGTTCACCACCAATCACAAGGAGAGACTAGACCCTGCATTGTTGCGTCCTGGTCGAATGGACTTGCACATTCACTTGTCATATTGCACCCCAAGTGGGTTCAGAATCTTAGCCTCTAACTACCTTGGCATTCATGAAAGCAGCCCTCATCACCTCTTTGGAGAAATTGAAAGCTTAATAGAGAGCACAGAGGTCACCCCTGCAGCTGTAGCTGAGGAGCTTATGAAGAGTGATGATGCAGATGTTGTTCTAGAAGGGCTTGTCAAATTCCTCAAAGAAAAGAAGGCTGCAGATGATAAAATGAAGTCAAAAAAGGCTAAAAAAGCTGAGCAGGAAAGGATGAAGAAAGCAGAGGAGGAAGGGAGTAAAAGTGGAGAGGAGGAAGGAACTAATAAAGCAGAGGTTGGAGGGAGTAAAAAAGGAAATGAGGAAGCCACTAAGAAAGCAGAGGAGGTAGGGACTGAAAAAGGAAAGGAGGAAGGGACTAACAAAACAGAGAGTCAGGAAAGGGATGAGGATGTGAACACAAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

548

Amino Acids

62.03

Weight (kDa)

7.57

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	41 - 136	7.7e-19	Domain associated at C-terminal with AAA
AAA	PF00004	263 - 397	9.1e-17	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	399 - 471	4.6e-24	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	3 cut(s)	243, 261, 1057
AccII	CGCG	1 cut(s)	295
AciI	CCGC	1 cut(s)	1092
AclWI	GGATC	5 cut(s)	82, 264, 277, 686, 699
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	1376
AcuI	CTGAAG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	3 cut(s)	458, 812, 1206
AgsI	TTSAA	3 cut(s)	79, 175, 1280
AjnI	CCWGG	4 cut(s)	128, 366, 457, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	1025, 1057
Alw21I	GWGCWC	3 cut(s)	111, 663, 1298
Alw26I	GTCTC	2 cut(s)	671, 1129
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	5 cut(s)	82, 264, 277, 686, 699
AlwNI	CAGNNNCTG	1 cut(s)	1035
AoxI	GGCC	4 cut(s)	355, 408, 446, 632
ApaLI	GTGCAC	1 cut(s)	659
ApeKI	GCWGC	5 cut(s)	833, 1089, 1251, 1313, 1397
ApoI	RAATTY	1 cut(s)	1376
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	3 cut(s)	399, 632, 800
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	5 cut(s)	473, 1036, 1108, 1253, 1297
AsuII	TTCGAA	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	399, 800
BaeGI	GKGCMC	1 cut(s)	663
BalI	TGGCCA	1 cut(s)	410
BamHI	GGATCC	2 cut(s)	269, 691
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	111, 529
BauI	CACGAG	1 cut(s)	656
Bbv12I	GWGCWC	3 cut(s)	111, 663, 1298
BbvCI	CCTCAGC	1 cut(s)	1323
BbvI	GCAGC	5 cut(s)	845, 1076, 1263, 1325, 1384
BccI	CCATC	4 cut(s)	461, 643, 676, 1067
BceAI	ACGGC	1 cut(s)	907
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	4 cut(s)	130, 368, 459, 1161
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	2 cut(s)	671, 1129
BfaI	CTAG	5 cut(s)	453, 882, 1139, 1361, 1645
BfmI	CTRYAG	3 cut(s)	1311, 1317, 1398
BfoI	RGCGCY	1 cut(s)	233
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	6 cut(s)	834, 1090, 1093, 1252, 1314, 1398
BlpI	GCTNAGC	2 cut(s)	996, 1437
BlsI	GCNGC	6 cut(s)	835, 1091, 1094, 1253, 1315, 1399
Bme1390I	CCNGG	5 cut(s)	130, 368, 459, 807, 1161
Bme18I	GGWCC	2 cut(s)	399, 800
BmgT120I	GGNCC	3 cut(s)	399, 632, 800
BmiI	GGNNCC	3 cut(s)	231, 271, 693
BmrFI	CCNGG	5 cut(s)	130, 368, 459, 807, 1161
BmsI	GCATC	1 cut(s)	1336
BoxI	GACNNNNGTC	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	511, 893
Bpu10I	CCTNAGC	1 cut(s)	1323
Bpu1102I	GCTNAGC	2 cut(s)	996, 1437
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	3 cut(s)	549, 686, 836
BpuMI	CCSGG	1 cut(s)	807
BsaAI	YACGTR	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	128, 129, 265, 837, 1234
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	1465, 1495
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 812, 1206
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	494, 817
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	4 cut(s)	130, 368, 459, 1161
BseDI	CCNNGG	5 cut(s)	128, 129, 265, 837, 1234
BseGI	GGATG	5 cut(s)	635, 1021, 1455, 1627, 1633
BseLI	CCNNNNNNNGG	3 cut(s)	458, 812, 1206
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	6 cut(s)	66, 296, 561, 1010, 1314, 1428
BseNI	ACTGG	2 cut(s)	494, 817
BseRI	GAGGAG	5 cut(s)	922, 1340, 1478, 1502, 1574
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	5 cut(s)	845, 1076, 1263, 1325, 1384
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	357, 410, 448, 634
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	3 cut(s)	111, 663, 1298
BsiSI	CCGG	3 cut(s)	394, 615, 807
BslFI	GGGAC	4 cut(s)	267, 1046, 1582, 1606
BslI	CCNNNNNNNGG	3 cut(s)	458, 812, 1206
BsmAI	GTCTC	2 cut(s)	671, 1129
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	4 cut(s)	267, 1046, 1582, 1606
BsmI	GAATGC	2 cut(s)	74, 1239
BsnI	GGCC	4 cut(s)	357, 410, 448, 634
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	4 cut(s)	111, 529, 663, 1298
Bsp143I	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
Bsp1720I	GCTNAGC	2 cut(s)	996, 1437
Bsp19I	CCATGG	1 cut(s)	837
Bsp68I	TCGCGA	1 cut(s)	295
BspACI	CCGC	1 cut(s)	1092
BspANI	GGCC	4 cut(s)	357, 410, 448, 634
BspCNI	CTCAG	6 cut(s)	65, 297, 562, 1009, 1315, 1429
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	3 cut(s)	231, 271, 693
BspMAI	CTGCAG	2 cut(s)	1315, 1402
BspPI	GGATC	5 cut(s)	82, 264, 277, 686, 699
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	494, 817
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	5 cut(s)	128, 129, 265, 837, 1234
BssMI	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
BssNI	GRCGYC	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	656
BssT1I	CCWWGG	2 cut(s)	837, 1234
Bst2BI	CACGAG	1 cut(s)	656
Bst2UI	CCWGG	4 cut(s)	130, 368, 459, 1161
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	5 cut(s)	53, 320, 468, 773, 1331
BstACI	GRCGYC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	1035
BstBAI	YACGTR	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	8 cut(s)	52, 305, 570, 996, 1219, 1323, 1437, 1548
BstDSI	CCRYGG	1 cut(s)	837
BstEII	GGTNACC	1 cut(s)	1303
BstF5I	GGATG	5 cut(s)	635, 1021, 1455, 1627, 1633
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	6 cut(s)	90, 140, 272, 655, 694, 871
BstMAI	GTCTC	2 cut(s)	671, 1129
BstMBI	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
BstMWI	GCNNNNNNNGC	6 cut(s)	315, 839, 891, 1035, 1319, 1433
BstNI	CCWGG	4 cut(s)	130, 368, 459, 1161
BstNSI	RCATGY	1 cut(s)	550
BstPAI	GACNNNNGTC	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	1303
BstSCI	CCNGG	5 cut(s)	128, 366, 457, 805, 1159
BstSFI	CTRYAG	3 cut(s)	1311, 1317, 1398
BstSLI	GKGCMC	1 cut(s)	663
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	5 cut(s)	845, 1076, 1263, 1325, 1384
BstX2I	RGATCY	3 cut(s)	269, 652, 691
BstYI	RGATCY	3 cut(s)	269, 652, 691
BsuRI	GGCC	4 cut(s)	357, 410, 448, 634
BtgI	CCRYGG	1 cut(s)	837
BtgZI	GCGATG	1 cut(s)	1110
BtsCI	GGATG	5 cut(s)	635, 1021, 1455, 1627, 1633
BtsI	GCAGTG	1 cut(s)	973
BtsIMutI	CAGTG	2 cut(s)	42, 973
BtuMI	TCGCGA	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	1035
CciI	TCATGA	1 cut(s)	1243
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	3 cut(s)	399, 632, 800
CseI	GACGC	1 cut(s)	1145
Csp6I	GTAC	1 cut(s)	810
CviAII	CATG	4 cut(s)	226, 547, 838, 1244
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	8 cut(s)	52, 305, 570, 996, 1219, 1323, 1437, 1548
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	6 cut(s)	89, 139, 271, 654, 693, 870
DpnII	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	5 cut(s)	53, 320, 468, 773, 1331
EarI	CTCTTC	5 cut(s)	53, 320, 468, 773, 1331
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	837, 1234
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	111, 529
Eco47I	GGWCC	2 cut(s)	399, 800
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	1303
EcoICRI	GAGCTC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	1303
EcoRII	CCWGG	4 cut(s)	128, 366, 457, 1159
EcoT14I	CCWWGG	2 cut(s)	837, 1234
EcoT38I	GRGCYC	2 cut(s)	111, 529
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	837, 1234
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	4 cut(s)	229, 550, 841, 1247
FaqI	GGGAC	4 cut(s)	267, 1046, 1582, 1606
FatI	CATG	4 cut(s)	225, 546, 837, 1243
FblI	GTMKAC	3 cut(s)	243, 261, 1057
Fnu4HI	GCNGC	6 cut(s)	834, 1090, 1093, 1252, 1314, 1398
FokI	GGATG	5 cut(s)	622, 1008, 1462, 1634, 1640
FriOI	GRGCYC	2 cut(s)	111, 529
Fsp4HI	GCNGC	6 cut(s)	834, 1090, 1093, 1252, 1314, 1398
FspBI	CTAG	5 cut(s)	453, 882, 1139, 1361, 1645
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	6 cut(s)	834, 1090, 1093, 1252, 1314, 1398
GsuI	CTGGAG	2 cut(s)	511, 893
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	357, 410, 448, 634
HapII	CCGG	3 cut(s)	394, 615, 807
HgaI	GACGC	1 cut(s)	1145
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	229, 550, 841, 1247
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	3 cut(s)	155, 602, 1282
HinfI	GANTC	9 cut(s)	290, 297, 479, 539, 572, 896, 989, 1215, 1609
HpaII	CCGG	3 cut(s)	394, 615, 807
HphI	GGTGA	5 cut(s)	473, 1036, 1108, 1253, 1297
Hpy166II	GTNNAC	9 cut(s)	244, 262, 399, 661, 803, 1044, 1058, 1116, 1633
Hpy188I	TCNGA	5 cut(s)	269, 289, 600, 901, 1214
Hpy8I	GTNNAC	9 cut(s)	244, 262, 399, 661, 803, 1044, 1058, 1116, 1633
HpyAV	CCTTC	9 cut(s)	76, 738, 754, 1011, 1358, 1387, 1463, 1487, 1583
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	6 cut(s)	315, 839, 891, 1035, 1319, 1433
HpyF3I	CTNAG	8 cut(s)	52, 305, 570, 996, 1219, 1323, 1437, 1548
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	229, 550, 841, 1247
HspAI	GCGC	1 cut(s)	230
KasI	GGCGCC	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
LmnI	GCTCC	3 cut(s)	492, 874, 1327
Lsp1109I	GCAGC	5 cut(s)	845, 1076, 1263, 1325, 1384
LweI	GCATC	1 cut(s)	1336
MaeI	CTAG	5 cut(s)	453, 882, 1139, 1361, 1645
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	1303
MalI	GATC	6 cut(s)	89, 139, 271, 654, 693, 870
MboI	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
MboII	GAAGA	8 cut(s)	40, 163, 337, 485, 718, 790, 1348, 1465
MflI	RGATCY	3 cut(s)	269, 652, 691
MhlI	GDGCHC	4 cut(s)	111, 529, 663, 1298
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	5 cut(s)	844, 902, 1107, 1275, 1376
MluNI	TGGCCA	1 cut(s)	410
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	5 cut(s)	291, 533, 581, 890, 1618
MmeI	TCCRAC	1 cut(s)	1495
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	3 cut(s)	503, 579, 1286
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	1316
MspI	CCGG	3 cut(s)	394, 615, 807
MspR9I	CCNGG	5 cut(s)	130, 368, 459, 807, 1161
Mva1269I	GAATGC	2 cut(s)	74, 1239
MvaI	CCWGG	4 cut(s)	130, 368, 459, 1161
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	6 cut(s)	315, 839, 891, 1035, 1319, 1433
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	807
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
NlaIII	CATG	4 cut(s)	229, 550, 841, 1247
NlaIV	GGNNCC	3 cut(s)	231, 271, 693
NmuCI	GTSAC	1 cut(s)	1303
NruI	TCGCGA	1 cut(s)	295
NspI	RCATGY	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	160
PagI	TCATGA	1 cut(s)	1243
PasI	CCCWGGG	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	2 cut(s)	74, 1239
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	4 cut(s)	290, 479, 989, 1215
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	6 cut(s)	835, 1091, 1094, 1253, 1315, 1399
PleI	GAGTC	5 cut(s)	291, 533, 580, 890, 1617
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	5 cut(s)	291, 533, 580, 890, 1617
Ppu21I	YACGTR	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	4 cut(s)	128, 366, 457, 1159
PspEI	GGTNACC	1 cut(s)	1303
PspGI	CCWGG	4 cut(s)	128, 366, 457, 1159
PspN4I	GGNNCC	3 cut(s)	231, 271, 693
PspPI	GGNCC	3 cut(s)	399, 632, 800
PstI	CTGCAG	2 cut(s)	1315, 1402
PstNI	CAGNNNCTG	1 cut(s)	1035
PsuI	RGATCY	3 cut(s)	269, 652, 691
PvuII	CAGCTG	1 cut(s)	1316
RruI	TCGCGA	1 cut(s)	295
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	503, 579, 1286
SatI	GCNGC	6 cut(s)	834, 1090, 1093, 1252, 1314, 1398
Sau3AI	GATC	6 cut(s)	87, 137, 269, 652, 691, 868
Sau96I	GGNCC	3 cut(s)	399, 632, 800
SchI	GAGTC	5 cut(s)	291, 533, 581, 890, 1618
ScrFI	CCNGG	5 cut(s)	130, 368, 459, 807, 1161
SduI	GDGCHC	4 cut(s)	111, 529, 663, 1298
SfaNI	GCATC	1 cut(s)	1336
SfcI	CTRYAG	3 cut(s)	1311, 1317, 1398
SfoI	GGCGCC	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	2 cut(s)	399, 800
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	564, 701, 851
SmoI	CTYRAG	3 cut(s)	564, 701, 851
Sse9I	AATT	5 cut(s)	844, 902, 1107, 1275, 1376
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	1092
SspDI	GGCGCC	1 cut(s)	229
SspMI	CTAG	5 cut(s)	453, 882, 1139, 1361, 1645
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	5 cut(s)	128, 366, 457, 805, 1159
StyI	CCWWGG	2 cut(s)	837, 1234
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	8 cut(s)	136, 160, 300, 378, 510, 675, 821, 1165
TasI	AATT	5 cut(s)	844, 902, 1107, 1275, 1376
TauI	GCSGC	1 cut(s)	1095
TfiI	GAWTC	4 cut(s)	290, 479, 989, 1215
Tru1I	TTAA	3 cut(s)	503, 579, 1286
Tru9I	TTAA	3 cut(s)	503, 579, 1286
TscAI	CASTG	2 cut(s)	42, 973
TseFI	GTSAC	1 cut(s)	1303
TseI	GCWGC	5 cut(s)	833, 1089, 1251, 1313, 1397
Tsp45I	GTSAC	1 cut(s)	1303
TspDTI	ATGAA	9 cut(s)	109, 596, 1057, 1113, 1232, 1260, 1349, 1427, 1466
TspRI	CASTG	2 cut(s)	42, 973
VneI	GTGCAC	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	399, 800
XapI	RAATTY	1 cut(s)	1376
XbaI	TCTAGA	1 cut(s)	1360
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	3 cut(s)	243, 261, 1057
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	5 cut(s)	453, 882, 1139, 1361, 1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.