Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

7004894 .. 7006831

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12719.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTTGCTCTCAATCCCAAACTTATGCCTACATCAGTGTCCTCACTGTTCTCAGCCTATGCCTCCTTCACTGCATTCATGATGTTGGTCCGTACTGTTCTCAAAGAACTCAAAGACTTCATCCCCCGCAGGGTTCGATCATACATATACTCCAAGTTTGAGTACTACTTCTTTGGACCTACTTCGAATCAGCTAACTCTTGTCATAAACAAGCACAGTGGCATGACCCTCAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTAGTCCCTCGGATAAGCGTCTTGTCCTGAGCAAAACAAAGAAGCAAAAGACTGTGAGCCTAGCCATTGAAAAGAGAGGCCAAGTTGTCATTGACACCTTTGATGGCATTGAGCTCCAATGGCAGTACCGGTACAGAGAAAAAAACAGGCAGAATAATGAGGTTGAGTCCGAGTGGTGGTTTGATTTAACGTTCAAAGAAAAATACAAAGCCAAAGTGATAGACTCCTACATTCCCTATGTGTTTGCTCAAGCTGATTCCATTCAACAAGGAGTAAGGGTTCTAAAGCTTTATGCCTTCAACAATACTTATAGTGGCACCACCACTTCAGGTAGTATAGATCTTGTGCACCCTGCTACATTTGATACAGTGGCAATGGATCCAGAACTTAAGAAAATGATTATAGAAGACTTGGATAGGTTTGTGGAGAGGAGAGAATTATATAAGAAGGTTGGGAAGGCATGGAAAAGAGGATATTTGTTATATGGTCCACCTGGGACTGGAAAATCTAGCTTAATTGCGGCCATGGCTAATTATCTCAAGTTTGATATCTACGATTTGGAGCTTGCTAATGTACATAGCAACGCTGATCTCAGGAAGGTATTGATGGCTACTACAAATCGTTCTATTCTGATCATCGAGGATATTGATTGCTGCGTGCATATAGAAAGGGAATCAAGTCAATCAACTCAGTCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

326

Amino Acids

37.46

Weight (kDa)

9.15

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	41 - 134	6e-21	Domain associated at C-terminal with AAA
AAA	PF00004	250 - 318	3.2e-11	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	2 cut(s)	127, 794
AclI	AACGTT	1 cut(s)	464
AclWI	GGATC	2 cut(s)	647, 660
AcoI	YGGCCR	1 cut(s)	795
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	5 cut(s)	94, 164, 401, 407, 849
AfiI	CCNNNNNNNGG	4 cut(s)	130, 235, 450, 773
AflII	CTTAAG	1 cut(s)	662
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	344, 469, 539, 574
AjnI	CCWGG	1 cut(s)	766
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	6 cut(s)	193, 388, 527, 562, 786, 838
AluI	AGCT	6 cut(s)	193, 388, 527, 562, 786, 838
Alw21I	GWGCWC	2 cut(s)	390, 624
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	647, 660
AoxI	GGCC	2 cut(s)	352, 795
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	927
AsiGI	ACCGGT	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	88, 176, 761
AsuII	TTCGAA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	88, 176, 761
BaeGI	GKGCMC	1 cut(s)	624
BamHI	GGATCC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	687, 960
Bbv12I	GWGCWC	2 cut(s)	390, 624
BbvI	GCAGC	1 cut(s)	914
BccI	CCATC	2 cut(s)	371, 874
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	1 cut(s)	906
BfaI	CTAG	2 cut(s)	335, 783
BfrI	CTTAAG	1 cut(s)	662
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	2 cut(s)	795, 928
BlsI	GCNGC	2 cut(s)	796, 929
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	3 cut(s)	88, 176, 761
BmgT120I	GGNCC	3 cut(s)	88, 176, 761
BmiI	GGNNCC	3 cut(s)	268, 592, 654
BmrFI	CCNGG	1 cut(s)	768
BpiI	GAAGAC	2 cut(s)	687, 960
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	507, 797
BsaJI	CCNNGG	4 cut(s)	262, 282, 767, 798
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 537, 567
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 235, 450, 773
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	778
Bse3DI	GCAATG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	4 cut(s)	262, 282, 767, 798
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	4 cut(s)	130, 235, 450, 773
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	4 cut(s)	66, 293, 880, 977
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	718
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	1 cut(s)	914
BshFI	GGCC	2 cut(s)	354, 797
BshNI	GGYRCC	1 cut(s)	590
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	2 cut(s)	390, 624
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	2 cut(s)	264, 784
BslI	CCNNNNNNNGG	4 cut(s)	130, 235, 450, 773
BsmFI	GGGAC	2 cut(s)	264, 784
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	354, 797
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	390, 624
Bsp1407I	TGTACA	1 cut(s)	847
Bsp143I	GATC	5 cut(s)	137, 613, 652, 862, 906
Bsp19I	CCATGG	1 cut(s)	798
BspACI	CCGC	2 cut(s)	127, 794
BspANI	GGCC	2 cut(s)	354, 797
BspCNI	CTCAG	4 cut(s)	65, 294, 879, 976
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	268, 592, 654
BspPI	GGATC	2 cut(s)	647, 660
BspT104I	TTCGAA	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	590
BspTI	CTTAAG	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	847
BsrI	ACTGG	1 cut(s)	778
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	4 cut(s)	262, 282, 767, 798
BssMI	GATC	5 cut(s)	137, 613, 652, 862, 906
BssT1I	CCWWGG	2 cut(s)	262, 798
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	48, 97, 218, 328, 643
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	847
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	840, 932
BstDEI	CTNAG	4 cut(s)	52, 302, 866, 963
BstDSI	CCRYGG	1 cut(s)	798
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	5 cut(s)	140, 616, 655, 865, 909
BstMBI	GATC	5 cut(s)	137, 613, 652, 862, 906
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 800
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	914
BstV2I	GAAGAC	2 cut(s)	687, 960
BstX2I	RGATCY	2 cut(s)	613, 652
BstYI	RGATCY	2 cut(s)	613, 652
BsuRI	GGCC	2 cut(s)	354, 797
BtgI	CCRYGG	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	5 cut(s)	42, 44, 69, 223, 648
Cac8I	GCNNGC	2 cut(s)	840, 932
CciI	TCATGA	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	3 cut(s)	88, 176, 761
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	5 cut(s)	93, 163, 400, 406, 848
CspAI	ACCGGT	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	4 cut(s)	79, 223, 735, 799
CviQI	GTAC	5 cut(s)	93, 163, 400, 406, 848
DdeI	CTNAG	4 cut(s)	52, 302, 866, 963
DpnI	GATC	5 cut(s)	139, 615, 654, 864, 908
DpnII	GATC	5 cut(s)	137, 613, 652, 862, 906
EaeI	YGGCCR	1 cut(s)	795
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	262, 798
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	3 cut(s)	88, 176, 761
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	766
EcoRV	GATATC	1 cut(s)	823
EcoT14I	CCWWGG	2 cut(s)	262, 798
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	262, 798
FaeI	CATG	4 cut(s)	82, 226, 738, 802
FaqI	GGGAC	2 cut(s)	264, 784
FatI	CATG	4 cut(s)	78, 222, 734, 798
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	906
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	795, 928
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	795, 928
FspBI	CTAG	2 cut(s)	335, 783
GluI	GCNGC	2 cut(s)	795, 928
HaeIII	GGCC	2 cut(s)	354, 797
HapII	CCGG	1 cut(s)	403
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	82, 226, 738, 802
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	5 cut(s)	187, 440, 497, 530, 947
HpaII	CCGG	1 cut(s)	403
Hpy166II	GTNNAC	3 cut(s)	259, 622, 764
Hpy188I	TCNGA	3 cut(s)	286, 445, 906
Hpy188III	TCNNGA	4 cut(s)	79, 301, 656, 868
Hpy8I	GTNNAC	3 cut(s)	259, 622, 764
HpyAV	CCTTC	6 cut(s)	76, 241, 580, 715, 724, 865
HpyCH4III	ACNGT	5 cut(s)	48, 97, 218, 328, 643
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	3 cut(s)	74, 622, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 800
HpyF3I	CTNAG	4 cut(s)	52, 302, 866, 963
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	4 cut(s)	82, 226, 738, 802
Ksp22I	TGATCA	1 cut(s)	906
Kzo9I	GATC	5 cut(s)	137, 613, 652, 862, 906
LmnI	GCTCC	3 cut(s)	266, 393, 835
Lsp1109I	GCAGC	1 cut(s)	914
MaeI	CTAG	2 cut(s)	335, 783
MaeII	ACGT	1 cut(s)	464
MalI	GATC	5 cut(s)	139, 615, 654, 864, 908
MboI	GATC	5 cut(s)	137, 613, 652, 862, 906
MboII	GAAGA	2 cut(s)	692, 960
MflI	RGATCY	2 cut(s)	613, 652
MhlI	GDGCHC	2 cut(s)	390, 624
MluCI	AATT	3 cut(s)	710, 789, 805
MlyI	GAGTC	2 cut(s)	449, 491
MseI	TTAA	4 cut(s)	461, 663, 788, 976
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	394, 800
NcoI	CCATGG	1 cut(s)	798
NdeII	GATC	5 cut(s)	137, 613, 652, 862, 906
NlaIII	CATG	4 cut(s)	82, 226, 738, 802
NlaIV	GGNNCC	3 cut(s)	268, 592, 654
NspV	TTCGAA	1 cut(s)	185
PagI	TCATGA	1 cut(s)	78
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	187, 530, 947
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	796, 929
PleI	GAGTC	2 cut(s)	448, 491
PpsI	GAGTC	2 cut(s)	448, 491
Psp124BI	GAGCTC	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	3 cut(s)	268, 592, 654
PspPI	GGNCC	3 cut(s)	88, 176, 761
PsuI	RGATCY	2 cut(s)	613, 652
RsaI	GTAC	5 cut(s)	94, 164, 401, 407, 849
RsaNI	GTAC	5 cut(s)	93, 163, 400, 406, 848
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	461, 663, 788, 976
SatI	GCNGC	2 cut(s)	795, 928
Sau3AI	GATC	5 cut(s)	137, 613, 652, 862, 906
Sau96I	GGNCC	3 cut(s)	88, 176, 761
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	2 cut(s)	449, 491
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	390, 624
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	3 cut(s)	88, 176, 761
SmlI	CTYRAG	3 cut(s)	522, 662, 812
SmoI	CTYRAG	3 cut(s)	522, 662, 812
Sse9I	AATT	3 cut(s)	710, 789, 805
SsiI	CCGC	2 cut(s)	127, 794
SspMI	CTAG	2 cut(s)	335, 783
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	2 cut(s)	262, 798
TaaI	ACNGT	5 cut(s)	48, 97, 218, 328, 643
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	3 cut(s)	136, 185, 912
TasI	AATT	3 cut(s)	710, 789, 805
TatI	WGTACW	2 cut(s)	162, 847
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	3 cut(s)	187, 530, 947
Tru1I	TTAA	4 cut(s)	461, 663, 788, 976
Tru9I	TTAA	4 cut(s)	461, 663, 788, 976
TscAI	CASTG	5 cut(s)	42, 51, 76, 223, 648
TseI	GCWGC	1 cut(s)	927
TspDTI	ATGAA	2 cut(s)	67, 109
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	5 cut(s)	42, 51, 76, 223, 648
Vha464I	CTTAAG	1 cut(s)	662
VneI	GTGCAC	1 cut(s)	620
VpaK11BI	GGWCC	3 cut(s)	88, 176, 761
XagI	CCTNNNNNAGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	335, 783
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.