Rroxscaffold_2G00141890

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
80102760 .. 80104133
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141890.1

Sequence Viewer

Length: 1284 bp
ATGGCGCCCAACGAGGTCTATAAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTAGTCCCTCCGATATGCGTCTCAAACTGAGCAAAACAAACCGGCAGAAGACAATCAGCCTTGCCATTGAAAAGAGAGGCCAAGTTGTCAAGGACACCTTTGATGACATTAAGCTCCAGTGGCGCTACATAGCCAAATCAAAAAAGTCGTCCAAAACCAACAACAGTCCTGCTGATGATGATGATGAAGAAGAGAAATATAACTGTGGCTTTGAGTTAACTTGCAATAAAAAACACAAAGCCAAAGTGATGGACTCCTACATGCCCTATGTGTTTGCTCAGGCTGATTCCATTAAGCAACGGCAAAAGGTTCTAAAGCTTTATTGCTCTGCCAATTATAGTTCTTCTAAAAGTAGCATAGATCTTGTGCACCCTGCTACTTTTGACACAGTGGCAATGGAACCAAAACTTAAGAAAATGATTATAGATGACTTGGATAGGTTTCTGGAGAGGAGAGAATTATATAAGAAGGTTGGGAAGGCATGGAAAAGAGGATATTGGTTATATGGTCCACCTGGAACTGGAAAATCTAGCTTAATTGCTGCTATGGCCAATTATCTCAAGTTTGATATATATGATTTGGAGCTTTCCACTATTTACAGCAACTCTGACCTGAGAAGGGTATTGCTGTCTACTACTAATCGTTCCATTGTGGTCATTGAGGATATTGATTGCAGTGTGAAGATCAATAATCGGGAATCAGCTATGTCATCTAAAACTGCAACACCCGGTATTCCTGCAAGCAAGTTCACACTCTCGGGCCTACTGAACTTCATTGATGGTTTGTGGTCATGCTGCGGTGATGAGAGGATAATTGTGTTCACCACCAACCACAAGGACAAACTAGACCCTGCATTGTTGCGTCCAGGTCGAATGGACGTGCACATCCACTTGTCATATTGCACTCCAAGTGGATTCAGAACCTTAGCATCTAACTACCTTGGCATTCATGAAAGCAACCCTCATCACCTCTGTGGGGAAATTGAAAGCTTAATAGAGAGCACAGAGGTCACTCCTGCAGCTGTAGCTGAGGCGCTTATGAAGAGTGATGATGTAGATGTTGTTCTTGAAGGGCTTGTCAAATTCCTCAAAGAAAAGAAGGCAGCAGATGATAAAATAAAGTTAAAAAATGCTAAAAAGACCGAGGAGGAAAGGACTAAGGCAGCAGAGGAGGAAGGGGCTAACAAAGCTTTCCTGCCTCTCTGGGATGGGGATTTGAGCACAAACTGCTAG

Protein Analysis

427

Amino Acids

48.09

Weight (kDa)

8.6

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 2 - 61 7.8e-12 Domain associated at C-terminal with AAA
AAA PF00004 185 - 316 1e-18 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 318 - 387 4.7e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 36, 683
AciI CCGC 1 cut(s) 849
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 1 cut(s) 1133
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 572, 670, 1027
AflII CTTAAG 1 cut(s) 461
AgsI TTSAA 3 cut(s) 122, 1037, 1121
AjiI CACGTC 1 cut(s) 931
AjnI CCWGG 2 cut(s) 565, 916
AleI CACNNNNGTG 1 cut(s) 1023
AluBI AGCT 9 cut(s) 166, 370, 585, 637, 755, 1041, 1073, 1079, 1241
AluI AGCT 9 cut(s) 166, 370, 585, 637, 755, 1041, 1073, 1079, 1241
Alw21I GWGCWC 4 cut(s) 423, 936, 1055, 1274
Alw26I GTCTC 1 cut(s) 77
Alw44I GTGCAC 2 cut(s) 419, 932
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 3 cut(s) 130, 600, 811
ApaLI GTGCAC 2 cut(s) 419, 932
ApeKI GCWGC 5 cut(s) 593, 846, 1070, 1154, 1214
ApoI RAATTY 1 cut(s) 1133
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 3 cut(s) 7, 177, 1087
AspS9I GGNCC 2 cut(s) 560, 811
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 3 cut(s) 863, 865, 1010
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 1 cut(s) 560
BaeGI GKGCMC 2 cut(s) 423, 936
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 4 cut(s) 423, 936, 1055, 1274
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 5 cut(s) 580, 833, 1082, 1166, 1226
BccI CCATC 3 cut(s) 295, 824, 1253
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 567, 918
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 3 cut(s) 582, 896, 1282
BfmI CTRYAG 2 cut(s) 1068, 1074
BfoI RGCGCY 3 cut(s) 8, 178, 1088
BfrI CTTAAG 1 cut(s) 461
BglII AGATCT 1 cut(s) 412
BisI GCNGC 5 cut(s) 594, 847, 1071, 1155, 1215
BlsI GCNGC 5 cut(s) 595, 848, 1072, 1156, 1216
Bme1390I CCNGG 3 cut(s) 567, 780, 918
Bme18I GGWCC 1 cut(s) 560
BmeT110I CYCGRG 1 cut(s) 808
BmgBI CACGTC 1 cut(s) 931
BmgT120I GGNCC 2 cut(s) 560, 811
BmiI GGNNCC 3 cut(s) 6, 46, 453
BmrFI CCNGG 3 cut(s) 567, 780, 918
BmsI GCATC 1 cut(s) 989
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 2 cut(s) 152, 518
Bpu10I CCTNAGC 3 cut(s) 330, 976, 1080
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 40, 991, 1194
Bsc4I CCNNNNNNNGG 3 cut(s) 572, 670, 1027
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 2 cut(s) 169, 577
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 567, 918
BseDI CCNNGG 3 cut(s) 40, 991, 1194
BseGI GGATG 2 cut(s) 936, 1264
BseLI CCNNNNNNNGG 3 cut(s) 572, 670, 1027
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 4 cut(s) 71, 344, 656, 1071
BseNI ACTGG 2 cut(s) 169, 577
BseRI GAGGAG 3 cut(s) 517, 1211, 1235
BseSI GKGCMC 2 cut(s) 423, 936
BseXI GCAGC 5 cut(s) 580, 833, 1082, 1166, 1226
BshFI GGCC 3 cut(s) 132, 602, 813
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 4 cut(s) 423, 936, 1055, 1274
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 2 cut(s) 94, 780
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 3 cut(s) 572, 670, 1027
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 3 cut(s) 132, 602, 813
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 4 cut(s) 423, 936, 1055, 1274
Bsp143I GATC 2 cut(s) 412, 735
BspACI CCGC 1 cut(s) 849
BspANI GGCC 3 cut(s) 132, 602, 813
BspCNI CTCAG 4 cut(s) 72, 343, 657, 1072
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 3 cut(s) 6, 46, 453
BspMAI CTGCAG 1 cut(s) 1072
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 2 cut(s) 169, 577
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 40, 991, 1194
BssMI GATC 2 cut(s) 412, 735
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 40, 991
Bst2UI CCWGG 2 cut(s) 567, 918
Bst4CI ACNGT 3 cut(s) 218, 257, 442
Bst6I CTCTTC 2 cut(s) 237, 1088
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 1278
BstC8I GCNNGC 1 cut(s) 793
BstDEI CTNAG 6 cut(s) 80, 330, 665, 976, 1080, 1209
BstF5I GGATG 2 cut(s) 936, 1264
BstH2I RGCGCY 3 cut(s) 8, 178, 1088
BstHHI GCGC 3 cut(s) 7, 177, 1087
BstKTI GATC 2 cut(s) 415, 738
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 412, 735
BstMWI GCNNNNNNNGC 5 cut(s) 172, 599, 1076, 1238, 1278
BstNI CCWGG 2 cut(s) 567, 918
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 3 cut(s) 565, 778, 916
BstSFI CTRYAG 2 cut(s) 1068, 1074
BstSLI GKGCMC 2 cut(s) 423, 936
BstV1I GCAGC 5 cut(s) 580, 833, 1082, 1166, 1226
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 3 cut(s) 132, 602, 813
BtrI CACGTC 1 cut(s) 931
BtsCI GGATG 2 cut(s) 936, 1264
BtsI GCAGTG 1 cut(s) 733
BtsIMutI CAGTG 3 cut(s) 176, 447, 733
Cac8I GCNNGC 1 cut(s) 793
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 3 cut(s) 7, 177, 1087
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 560, 811
CseI GACGC 2 cut(s) 59, 902
CviAII CATG 4 cut(s) 313, 534, 843, 1001
DdeI CTNAG 6 cut(s) 80, 330, 665, 976, 1080, 1209
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 414, 737
DpnII GATC 2 cut(s) 412, 735
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 2 cut(s) 237, 1088
EarI CTCTTC 2 cut(s) 237, 1088
Eco130I CCWWGG 2 cut(s) 40, 991
Eco47I GGWCC 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 565, 916
EcoT14I CCWWGG 2 cut(s) 40, 991
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 40, 991
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 4 cut(s) 316, 537, 846, 1004
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 312, 533, 842, 1000
FblI GTMKAC 2 cut(s) 36, 683
Fnu4HI GCNGC 5 cut(s) 594, 847, 1071, 1155, 1215
FokI GGATG 2 cut(s) 923, 1271
Fsp4HI GCNGC 5 cut(s) 594, 847, 1071, 1155, 1215
FspBI CTAG 3 cut(s) 582, 896, 1282
GlaI GCGC 3 cut(s) 6, 176, 1086
GluI GCNGC 5 cut(s) 594, 847, 1071, 1155, 1215
GsuI CTGGAG 2 cut(s) 152, 518
HaeII RGCGCY 3 cut(s) 8, 178, 1088
HaeIII GGCC 3 cut(s) 132, 602, 813
HapII CCGG 2 cut(s) 94, 780
HgaI GACGC 2 cut(s) 59, 902
HhaI GCGC 3 cut(s) 7, 177, 1087
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 316, 537, 846, 1004
Hin6I GCGC 3 cut(s) 5, 175, 1085
HinP1I GCGC 3 cut(s) 5, 175, 1085
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 3 cut(s) 368, 1039, 1239
HinfI GANTC 4 cut(s) 305, 338, 749, 966
HpaI GTTAAC 1 cut(s) 270
HpaII CCGG 2 cut(s) 94, 780
HphI GGTGA 3 cut(s) 863, 865, 1010
Hpy166II GTNNAC 8 cut(s) 37, 270, 421, 563, 684, 801, 873, 934
Hpy188I TCNGA 3 cut(s) 64, 661, 971
Hpy188III TCNNGA 4 cut(s) 497, 746, 1001, 1118
Hpy8I GTNNAC 8 cut(s) 37, 270, 421, 563, 684, 801, 873, 934
HpyAV CCTTC 7 cut(s) 19, 514, 523, 663, 1115, 1144, 1220
HpyCH4III ACNGT 3 cut(s) 218, 257, 442
HpyCH4IV ACGT 1 cut(s) 930
HpyCH4V TGCA 9 cut(s) 276, 421, 726, 773, 791, 905, 934, 954, 1070
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 599, 1076, 1238, 1278
HpyF3I CTNAG 6 cut(s) 80, 330, 665, 976, 1080, 1209
HpySE526I ACGT 1 cut(s) 930
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 316, 537, 846, 1004
HspAI GCGC 3 cut(s) 5, 175, 1085
KasI GGCGCC 1 cut(s) 4
KspAI GTTAAC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 412, 735
LmnI GCTCC 3 cut(s) 44, 171, 634
Lsp1109I GCAGC 5 cut(s) 580, 833, 1082, 1166, 1226
LweI GCATC 1 cut(s) 989
MaeI CTAG 3 cut(s) 582, 896, 1282
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 1 cut(s) 1060
MalI GATC 2 cut(s) 414, 737
MboI GATC 2 cut(s) 412, 735
MboII GAAGA 6 cut(s) 112, 251, 254, 387, 745, 1105
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 4 cut(s) 423, 936, 1055, 1274
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 7 cut(s) 385, 509, 588, 604, 864, 1032, 1133
MluNI TGGCCA 1 cut(s) 602
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 299
Mox20I TGGCCA 1 cut(s) 602
MscI TGGCCA 1 cut(s) 602
MseI TTAA 7 cut(s) 162, 269, 345, 462, 587, 1043, 1175
MslI CAYNNNNRTG 1 cut(s) 1023
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 1073
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 2 cut(s) 94, 780
MspR9I CCNGG 3 cut(s) 567, 780, 918
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 2 cut(s) 567, 918
MwoI GCNNNNNNNGC 5 cut(s) 172, 599, 1076, 1238, 1278
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 780
NdeII GATC 2 cut(s) 412, 735
NlaIII CATG 4 cut(s) 316, 537, 846, 1004
NlaIV GGNNCC 3 cut(s) 6, 46, 453
NmuCI GTSAC 1 cut(s) 1060
NspI RCATGY 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 1023
PagI TCATGA 1 cut(s) 1000
PctI GAATGC 1 cut(s) 996
PfeI GAWTC 3 cut(s) 338, 749, 966
PkrI GCNGC 5 cut(s) 595, 848, 1072, 1156, 1216
PleI GAGTC 1 cut(s) 299
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 565, 916
PspGI CCWGG 2 cut(s) 565, 916
PspN4I GGNNCC 3 cut(s) 6, 46, 453
PspPI GGNCC 2 cut(s) 560, 811
PsrI GAACNNNNNNTAC 2 cut(s) 1098, 1130
PstI CTGCAG 1 cut(s) 1072
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 1073
RseI CAYNNNNRTG 1 cut(s) 1023
SaqAI TTAA 7 cut(s) 162, 269, 345, 462, 587, 1043, 1175
SatI GCNGC 5 cut(s) 594, 847, 1071, 1155, 1215
Sau3AI GATC 2 cut(s) 412, 735
Sau96I GGNCC 2 cut(s) 560, 811
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 567, 780, 918
SduI GDGCHC 4 cut(s) 423, 936, 1055, 1274
SfaNI GCATC 1 cut(s) 989
SfcI CTRYAG 2 cut(s) 1068, 1074
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 2 cut(s) 461, 611
SmoI CTYRAG 2 cut(s) 461, 611
Sse9I AATT 7 cut(s) 385, 509, 588, 604, 864, 1032, 1133
SsiI CCGC 1 cut(s) 849
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 3 cut(s) 582, 896, 1282
StyD4I CCNGG 3 cut(s) 565, 778, 916
StyI CCWWGG 2 cut(s) 40, 991
TaaI ACNGT 3 cut(s) 218, 257, 442
TaiI ACGT 1 cut(s) 933
TaqI TCGA 1 cut(s) 922
TaqII GACCGA 1 cut(s) 1208
TasI AATT 7 cut(s) 385, 509, 588, 604, 864, 1032, 1133
TfiI GAWTC 3 cut(s) 338, 749, 966
Tru1I TTAA 7 cut(s) 162, 269, 345, 462, 587, 1043, 1175
Tru9I TTAA 7 cut(s) 162, 269, 345, 462, 587, 1043, 1175
TscAI CASTG 3 cut(s) 176, 447, 733
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 5 cut(s) 593, 846, 1070, 1154, 1214
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 5 cut(s) 252, 814, 989, 1017, 1106
TspRI CASTG 3 cut(s) 176, 447, 733
Vha464I CTTAAG 1 cut(s) 461
VneI GTGCAC 2 cut(s) 419, 932
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 1 cut(s) 1133
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 36, 683
XspI CTAG 3 cut(s) 582, 896, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.