Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002147

Physical Location & Seq

Genomic Coordinates Reverse (-)

12503245 .. 12503873

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTTCCTCTCAATCCCAAACATATACCTACATCAGTGTCCTCACTGTTCTCAGCCTATGCCTCCTTTACTACATTCATGATGTTGGTCCGTACTGTTGTCAAAGAACTCAAAGATCTCATCCCCCTCAAGGTTCGATCATACATATACTCCAAGCTTGAGTACTACTTCTTTACCCCTACCCCGAATGATCACCTAACTCTTGTCATAAACAAGAACATTGGCATGGCGCTGAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTACTCCCTCCGATAAGCGTCTTGTACTGAGCAAAACAAATAAGCAAAAAACTGTGAGCCTAGCCATTGAAAAAAGAGGCCAAGTTGTCATTGATACCTTCGATGACATTGAGCTCCGGTGGCGTTACCTGGCCAAACAAAATAAGTCCAAAAACAAGCAGAGTCCTGCTTCTGCTGCTGATGATGAAGAAGAGTTAGAGTGGTTCTTTGAGTTAACTTTCAATGAGAAACACAGAGCCAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

174

Amino Acids

20.25

Weight (kDa)

9.34

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	41 - 135	3.3e-18	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12713 FvH4_1g12717 FvH4_1g12718 FvH4_1g12719 FvH4_7g23320
rosa_chinensis	RchiOBHm_Chr2g0100731 RchiOBHm_Chr2g0100741 RchiOBHm_Chr2g0100751 RchiOBHm_Chr2g0100761 RchiOBHm_Chr2g0100771
rosa_laevigata	RLG00000017003 RLG00000017005 RLG00000017006 RLG00000017007 RLG00000017008
rosa_multiflora	Rmu_sc0001659.1_g000011 Rmu_sc0001659.1_g000013 Rmu_sc0001659.1_g000014 Rmu_sc0001659.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141880 Rroxscaffold_2G00141890 Rroxscaffold_2G00141900 Rroxscaffold_2G00141910 Rroxscaffold_2G00141920
rosa_rugosa	Rorug02G0092200 Rorug02G0092300 Rorug02G0092400 Rorug02G0092500
rosa_samantha	Rh2BG144600 Rh2BG144700 Rh2BG145000 Rh2BG145200 Rh2CG145600 Rh2CG145800 Rh2CG145900 Rh2CG146000 Rh2CG146100 Rh2DG145100 Rh2DG145300 Rh2DG145400 Rh2DG145500 Rh2DG145600
rosa_wichuraiana	Rw2G010960 Rw2G010970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	408
AfaI	GTAC	3 cut(s)	94, 164, 303
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	347, 499
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	157, 391
AluI	AGCT	2 cut(s)	157, 391
Alw21I	GWGCWC	1 cut(s)	393
AoxI	GGCC	2 cut(s)	355, 408
ApeKI	GCWGC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	233
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	113, 179
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	66, 296
BseXI	GCAGC	1 cut(s)	439
BshFI	GGCC	2 cut(s)	357, 410
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	130
BsnI	GGCC	2 cut(s)	357, 410
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	115, 137, 190
BspANI	GGCC	2 cut(s)	357, 410
BspCNI	CTCAG	2 cut(s)	65, 297
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	115, 137, 190
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	48, 97, 331
Bst6I	CTCTTC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	52, 305
BstF5I	GGATG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	3 cut(s)	118, 140, 193
BstMBI	GATC	3 cut(s)	115, 137, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 452
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	357, 410
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	42, 44
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	93, 163, 302
CviAII	CATG	2 cut(s)	79, 226
CviJI	RGCY	9 cut(s)	56, 157, 272, 336, 341, 357, 391, 410, 515
CviKI_1	RGCY	9 cut(s)	56, 157, 272, 336, 341, 357, 391, 410, 515
CviQI	GTAC	3 cut(s)	93, 163, 302
DdeI	CTNAG	2 cut(s)	52, 305
DpnI	GATC	3 cut(s)	117, 139, 192
DpnII	GATC	3 cut(s)	115, 137, 190
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	82, 229
FatI	CATG	2 cut(s)	78, 225
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	357, 410
HapII	CCGG	1 cut(s)	394
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	82, 229
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	439
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	262, 492
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	262, 492
HpyAV	CCTTC	2 cut(s)	244, 385
HpyCH4III	ACNGT	3 cut(s)	48, 97, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 452
HpyF3I	CTNAG	2 cut(s)	52, 305
Hsp92II	CATG	2 cut(s)	82, 229
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	115, 137, 190
LmnI	GCTCC	2 cut(s)	269, 396
LpnPI	CCDG	4 cut(s)	392, 407, 419, 456
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	3 cut(s)	117, 139, 192
MboI	GATC	3 cut(s)	115, 137, 190
MboII	GAAGA	2 cut(s)	476, 479
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	8 cut(s)	18, 52, 73, 137, 232, 250, 295, 347
Mox20I	TGGCCA	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	397, 452
NdeII	GATC	3 cut(s)	115, 137, 190
NlaIII	CATG	2 cut(s)	82, 229
NlaIV	GGNNCC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	94, 164, 303
RsaNI	GTAC	3 cut(s)	93, 163, 302
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	115, 137, 190
Sau96I	GGNCC	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	393
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	128, 158
SmoI	CTYRAG	2 cut(s)	128, 158
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	48, 97, 331
TaqI	TCGA	2 cut(s)	136, 378
TatI	WGTACW	2 cut(s)	162, 301
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	2 cut(s)	42, 51
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	67, 477
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	42, 51
VpaK11BI	GGWCC	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	338
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.