Rroxscaffold_2G00141880

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
80100003 .. 80101544
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141880.1

Sequence Viewer

Length: 1368 bp
ATGGCGCTGAACGAGGTCTATGAGAAGGTAGAGGTCTACCTTGGAGCCAAGATTACTCCCTCCGATAAGCGTCTCGTACTGAGCAAAACAAATAAGCAAAATACTGTGAGCCTAGCCATTGAAAAAAGAGGCCAAGTTGTCATTGATACCTTTGATGACATTGAGCTCCAGTGGCGTTACCTGACCAAACAAAATAAGTCCAAAAACAAGCAGAGTCCTGCTTCTGCTGCTGATGATGAAGAAGAGTTAGAGTGGTTCTTTGAGTTAACATTCAATGAGAAACACAGAGCCAAAGTGATAGACTCCTACATGCCATATGTGTTTGCTCAGGCTGATTCCATTCAACAAGGGAAAAGGGTTCTAAAGCTTTATTCCTCTGCCACTTATGGTTCTCCTAGAAGTAGCATAGATCTTGTGCACCCGGCTACTTTTGATACAGTGGCAATGGATCCAGAACTTAAGAAAATGATTATAGATGACTTGGATAGGTTCATAAAGAGGAGGGAATTATATAAGAAGGTTGGGAAGGCATGGAAAAGAGGATATTTGTTATATGGTCCACCTGGTACTGGAAAATCTAGCTTGATTGCTGCCATGGCTAATTATCTCCAGTTTGATATATTTGATTTGGAGCTTTCTAATATATATAGCAACTCTGACTTGAGGAAGGTATTGATGTCCACTTCAAATCGTTCTATTCTGGTCATTGAGGATATTGATTGCAGTGTGAAAATAGACAATCGGGAATCAGTTCAGCCTTCCATACCCTGTAGAACTTCAGTTTCTATTCCTGCAACCAAGTTCACACTCTCGGGCCTACTGAACTTCATAGATGGTTTGTGGTCATGCTGCGGCGATGAGAGGATAATTGTGTTCACCACCAACCACAAGGACAAACTAGACCCTGCATTGTTGCGTCCAGGTCGAATGGACGTGCACATCCTCTTGTCATACTGCACTCCGAGTGCGTTCAGAACCTTAGCCTCTAATTACCTTGGCATTCATGAAAGCAATCCTCATCACCTGTGTGGGGAAATTGAAAGCTTAATAGAGAGCACAGAGGTTACCCCTGCAGCTGTAGCTGGGGAGCTTATGAAGGGTGATGATGCAGATGTTGTTCTTGAAGGGCTTGTCAAATTCCTCAAAGAAAAGAAGGCTGCTAATGATAAGATAAAATTAGAACAGGCTAAAAGAGCCAGAGAGGAAGGGAATAAGAAAGCAGAGCTGGAAGGGACTAACAAACAAGAGAAGCAGGAAAGGGATGAGGATGCAAACAAAAAACAGCTAGAAGAGTTGGAAGAGAGAAGCCACAATTTGATTAGGGGAAAAGCTATGTTTAGTAGGCTGTCTTCACAAGTCGATCAGTGA

Protein Analysis

455

Amino Acids

51.53

Weight (kDa)

6.32

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 3 - 60 1.1e-10 Domain associated at C-terminal with AAA
AAA PF00004 182 - 317 5.3e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 319 - 389 2.9e-21 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 852
AclWI GGATC 2 cut(s) 443, 456
AcsI RAATTY 1 cut(s) 1136
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 78, 568
AfiI CCNNNNNNNGG 2 cut(s) 569, 1030
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 6 cut(s) 122, 274, 344, 687, 1040, 1124
AjiI CACGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 562, 919
AleI CACNNNNGTG 1 cut(s) 1026
Alw21I GWGCWC 4 cut(s) 168, 420, 939, 1058
Alw26I GTCTC 1 cut(s) 77
Alw44I GTGCAC 2 cut(s) 416, 935
AlwI GGATC 2 cut(s) 443, 456
Ama87I CYCGRG 1 cut(s) 811
AoxI GGCC 2 cut(s) 130, 814
ApaLI GTGCAC 2 cut(s) 416, 935
ApeKI GCWGC 5 cut(s) 227, 590, 849, 1073, 1157
ApoI RAATTY 1 cut(s) 1136
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 557, 814
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 868, 1013, 1112
AvaI CYCGRG 1 cut(s) 811
AvaII GGWCC 1 cut(s) 557
BaeGI GKGCMC 2 cut(s) 420, 939
BamHI GGATCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 1333, 1365
BbsI GAAGAC 1 cut(s) 1341
Bbv12I GWGCWC 4 cut(s) 168, 420, 939, 1058
BbvI GCAGC 5 cut(s) 214, 577, 836, 1085, 1144
BccI CCATC 1 cut(s) 827
BciT130I CCWGG 2 cut(s) 564, 921
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 5 cut(s) 113, 396, 579, 899, 1286
BfmI CTRYAG 3 cut(s) 769, 1071, 1077
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 458
BglII AGATCT 1 cut(s) 409
BisI GCNGC 6 cut(s) 228, 591, 850, 853, 1074, 1158
BlsI GCNGC 6 cut(s) 229, 592, 851, 854, 1075, 1159
Bme1390I CCNGG 3 cut(s) 422, 564, 921
Bme18I GGWCC 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 811
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 2 cut(s) 557, 814
BmiI GGNNCC 2 cut(s) 46, 450
BmrFI CCNGG 3 cut(s) 422, 564, 921
BmsI GCATC 2 cut(s) 1096, 1258
BpiI GAAGAC 1 cut(s) 1341
BpmI CTGGAG 2 cut(s) 152, 593
Bpu10I CCTNAGC 2 cut(s) 327, 979
BpuEI CTTGAG 1 cut(s) 682
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 40, 594, 994
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 1030
Bse1I ACTGG 3 cut(s) 169, 574, 610
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 2 cut(s) 564, 921
BseDI CCNNGG 3 cut(s) 40, 594, 994
BseGI GGATG 3 cut(s) 939, 1267, 1273
BseLI CCNNNNNNNGG 2 cut(s) 569, 1030
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 71, 341
BseNI ACTGG 3 cut(s) 169, 574, 610
BseRI GAGGAG 1 cut(s) 514
BseSI GKGCMC 2 cut(s) 420, 939
BseXI GCAGC 5 cut(s) 214, 577, 836, 1085, 1144
BseYI CCCAGC 1 cut(s) 1082
BsgI GTGCAG 1 cut(s) 940
BshFI GGCC 2 cut(s) 132, 816
BsiHKAI GWGCWC 4 cut(s) 168, 420, 939, 1058
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 1246
BslI CCNNNNNNNGG 2 cut(s) 569, 1030
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 1246
BsmI GAATGC 1 cut(s) 999
BsnI GGCC 2 cut(s) 132, 816
BsoBI CYCGRG 1 cut(s) 811
Bsp1286I GDGCHC 4 cut(s) 168, 420, 939, 1058
Bsp143I GATC 3 cut(s) 409, 448, 1360
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 1 cut(s) 852
BspANI GGCC 2 cut(s) 132, 816
BspCNI CTCAG 2 cut(s) 72, 340
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 2 cut(s) 46, 450
BspMAI CTGCAG 1 cut(s) 1075
BspPI GGATC 2 cut(s) 443, 456
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 3 cut(s) 169, 574, 610
BssECI CCNNGG 3 cut(s) 40, 594, 994
BssMI GATC 3 cut(s) 409, 448, 1360
BssT1I CCWWGG 3 cut(s) 40, 594, 994
Bst2UI CCWGG 2 cut(s) 564, 921
Bst4CI ACNGT 2 cut(s) 106, 439
Bst6I CTCTTC 3 cut(s) 237, 1284, 1293
BstAFI CTTAAG 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 80, 327, 979
BstDSI CCRYGG 1 cut(s) 594
BstEII GGTNACC 1 cut(s) 1063
BstF5I GGATG 3 cut(s) 939, 1267, 1273
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 412, 451, 1363
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 409, 448, 1360
BstMWI GCNNNNNNNGC 5 cut(s) 172, 227, 596, 1079, 1193
BstNI CCWGG 2 cut(s) 564, 921
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 1063
BstSCI CCNGG 3 cut(s) 420, 562, 919
BstSFI CTRYAG 3 cut(s) 769, 1071, 1077
BstSLI GKGCMC 2 cut(s) 420, 939
BstV1I GCAGC 5 cut(s) 214, 577, 836, 1085, 1144
BstV2I GAAGAC 1 cut(s) 1341
BstX2I RGATCY 2 cut(s) 409, 448
BstYI RGATCY 2 cut(s) 409, 448
BsuRI GGCC 2 cut(s) 132, 816
BtgI CCRYGG 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 870
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 3 cut(s) 939, 1267, 1273
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 3 cut(s) 176, 444, 730
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 557, 814
CseI GACGC 2 cut(s) 59, 905
CsiI ACCWGGT 1 cut(s) 562
Csp6I GTAC 2 cut(s) 77, 567
CviAII CATG 5 cut(s) 310, 531, 595, 846, 1004
CviQI GTAC 2 cut(s) 77, 567
DdeI CTNAG 3 cut(s) 80, 327, 979
DpnI GATC 3 cut(s) 411, 450, 1362
DpnII GATC 3 cut(s) 409, 448, 1360
Eam1104I CTCTTC 3 cut(s) 237, 1284, 1293
EarI CTCTTC 3 cut(s) 237, 1284, 1293
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 40, 594, 994
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 1063
EcoICRI GAGCTC 1 cut(s) 166
EcoO65I GGTNACC 1 cut(s) 1063
EcoRII CCWGG 2 cut(s) 562, 919
EcoT14I CCWWGG 3 cut(s) 40, 594, 994
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 3 cut(s) 40, 594, 994
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 5 cut(s) 313, 534, 598, 849, 1007
FaqI GGGAC 1 cut(s) 1246
FatI CATG 5 cut(s) 309, 530, 594, 845, 1003
FauNDI CATATG 1 cut(s) 316
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 6 cut(s) 228, 591, 850, 853, 1074, 1158
FokI GGATG 3 cut(s) 926, 1274, 1280
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 6 cut(s) 228, 591, 850, 853, 1074, 1158
FspBI CTAG 5 cut(s) 113, 396, 579, 899, 1286
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 228, 591, 850, 853, 1074, 1158
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 2 cut(s) 152, 593
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 132, 816
HapII CCGG 1 cut(s) 422
HgaI GACGC 2 cut(s) 59, 905
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 313, 534, 598, 849, 1007
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 2 cut(s) 365, 1042
HinfI GANTC 4 cut(s) 214, 302, 335, 746
HpaI GTTAAC 1 cut(s) 267
HpaII CCGG 1 cut(s) 422
HphI GGTGA 3 cut(s) 868, 1013, 1112
Hpy166II GTNNAC 8 cut(s) 37, 267, 418, 560, 681, 804, 876, 937
Hpy188I TCNGA 4 cut(s) 64, 658, 963, 974
Hpy188III TCNNGA 4 cut(s) 452, 743, 1004, 1121
Hpy8I GTNNAC 8 cut(s) 37, 267, 418, 560, 681, 804, 876, 937
HpyCH4III ACNGT 2 cut(s) 106, 439
HpyCH4IV ACGT 1 cut(s) 933
HpyCH4V TGCA 9 cut(s) 418, 723, 794, 908, 937, 957, 1073, 1109, 1271
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 227, 596, 1079, 1193
HpyF3I CTNAG 3 cut(s) 80, 327, 979
HpySE526I ACGT 1 cut(s) 933
Hsp92II CATG 5 cut(s) 313, 534, 598, 849, 1007
HspAI GCGC 1 cut(s) 5
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 3 cut(s) 409, 448, 1360
LmnI GCTCC 4 cut(s) 44, 171, 631, 1087
Lsp1109I GCAGC 5 cut(s) 214, 577, 836, 1085, 1144
LweI GCATC 2 cut(s) 1096, 1258
MabI ACCWGGT 1 cut(s) 562
MaeI CTAG 5 cut(s) 113, 396, 579, 899, 1286
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 2 cut(s) 176, 1063
MalI GATC 3 cut(s) 411, 450, 1362
MboI GATC 3 cut(s) 409, 448, 1360
MboII GAAGA 5 cut(s) 251, 254, 1301, 1310, 1341
MflI RGATCY 2 cut(s) 409, 448
MhlI GDGCHC 4 cut(s) 168, 420, 939, 1058
MluCI AATT 8 cut(s) 506, 601, 867, 988, 1035, 1136, 1175, 1312
MlyI GAGTC 2 cut(s) 223, 296
MmeI TCCRAC 1 cut(s) 1275
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 3 cut(s) 266, 459, 1046
MslI CAYNNNNRTG 1 cut(s) 1026
MspA1I CMGCKG 1 cut(s) 1076
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 422, 564, 921
Mva1269I GAATGC 1 cut(s) 999
MvaI CCWGG 2 cut(s) 564, 921
MwoI GCNNNNNNNGC 5 cut(s) 172, 227, 596, 1079, 1193
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 316
NdeII GATC 3 cut(s) 409, 448, 1360
NlaIII CATG 5 cut(s) 313, 534, 598, 849, 1007
NlaIV GGNNCC 2 cut(s) 46, 450
NspI RCATGY 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 1026
PagI TCATGA 1 cut(s) 1003
PctI GAATGC 1 cut(s) 999
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 2 cut(s) 335, 746
PkrI GCNGC 6 cut(s) 229, 592, 851, 854, 1075, 1159
PleI GAGTC 2 cut(s) 222, 296
PpsI GAGTC 2 cut(s) 222, 296
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 562, 919
PspEI GGTNACC 1 cut(s) 1063
PspFI CCCAGC 1 cut(s) 1082
PspGI CCWGG 2 cut(s) 562, 919
PspN4I GGNNCC 2 cut(s) 46, 450
PspPI GGNCC 2 cut(s) 557, 814
PstI CTGCAG 1 cut(s) 1075
PsuI RGATCY 2 cut(s) 409, 448
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 2 cut(s) 78, 568
RsaNI GTAC 2 cut(s) 77, 567
RseI CAYNNNNRTG 1 cut(s) 1026
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 266, 459, 1046
SatI GCNGC 6 cut(s) 228, 591, 850, 853, 1074, 1158
Sau3AI GATC 3 cut(s) 409, 448, 1360
Sau96I GGNCC 2 cut(s) 557, 814
SchI GAGTC 2 cut(s) 223, 296
ScrFI CCNGG 3 cut(s) 422, 564, 921
SduI GDGCHC 4 cut(s) 168, 420, 939, 1058
SexAI ACCWGGT 1 cut(s) 562
SfaNI GCATC 2 cut(s) 1096, 1258
SfcI CTRYAG 3 cut(s) 769, 1071, 1077
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 1026
SmlI CTYRAG 2 cut(s) 458, 661
SmoI CTYRAG 2 cut(s) 458, 661
Sse9I AATT 8 cut(s) 506, 601, 867, 988, 1035, 1136, 1175, 1312
SsiI CCGC 1 cut(s) 852
SspMI CTAG 5 cut(s) 113, 396, 579, 899, 1286
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 420, 562, 919
StyI CCWWGG 3 cut(s) 40, 594, 994
TaaI ACNGT 2 cut(s) 106, 439
TaiI ACGT 1 cut(s) 936
TaqI TCGA 2 cut(s) 925, 1359
TasI AATT 8 cut(s) 506, 601, 867, 988, 1035, 1136, 1175, 1312
TauI GCSGC 1 cut(s) 855
TfiI GAWTC 2 cut(s) 335, 746
Tru1I TTAA 3 cut(s) 266, 459, 1046
Tru9I TTAA 3 cut(s) 266, 459, 1046
TscAI CASTG 3 cut(s) 176, 444, 730
TseI GCWGC 5 cut(s) 227, 590, 849, 1073, 1157
TspDTI ATGAA 6 cut(s) 252, 481, 817, 992, 1020, 1109
TspRI CASTG 3 cut(s) 176, 444, 730
Vha464I CTTAAG 1 cut(s) 458
VneI GTGCAC 2 cut(s) 416, 935
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 1 cut(s) 1136
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 5 cut(s) 113, 396, 579, 899, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.