Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Reverse (-)

7055649 .. 7056395

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATTCATGGAGCTTCGTCGACAACGTCAAGGCCGAGAAAGCCAGCGCCATGCGGAGGTACAACCGCCTCCGCGCCATCGCCAGGCTCTTCCGCCTTGCCGAGCTCTGCCTCGCTGCTGTCCTCCTCTCTTGGACCTTCACCCGCCTCCCCTGCGCCCTCCGCGTCTCCGTCGACTACCTCCGCCTCTTCTCCGGCGTCGTCTCCAGCCCCCTCTTTGTTTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTCGCCAAGTCCCACCACCTCGCCACCGCCCCTCCAAACATCGAAGTCGAGACTCACCTTTACGATCAGTTCACCGACGGAAAGAAGTCGAGCTCCAGTGACGACGTCGTCCCGAAAGAGGAGGTTGTGTATGAGGACAAGCAGATCATCTCCGAGGTGATGAGCACCGCCGGCGATCCTAAAGGTGAAGCGAACTTGGACTCCGGCGCGGAGTCAGAGTCGGACTCGGGTTTGGAGTTTACGAAAGCGATACGGAGGACGAAGTCAGAGAAGTTCGTTAGAGATGTTCCGGCGAAGCTAAAAAGGTCGGACACGGAGAATTGCCGGAAAATGCTGAAGTCCGGCGAGGAAACGGTGCCCGAAGATTTAGATCAGGAGGACGGCTTGAGCAACGAGGAGTTTCAACGCGCCATTGAAGCTTTCATTGAGAGGCAGAAGAGGTTTCGTCATGAAGAAGAGTCTATGGCCATTGTGCTTCAAAACCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

249

Amino Acids

28.03

Weight (kDa)

5.33

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	610
AccI	GTMKAC	2 cut(s)	21, 174
AccII	CGCG	4 cut(s)	75, 165, 464, 663
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	611
AcyI	GRCGYC	2 cut(s)	198, 360
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	57, 84, 373
AgsI	TTSAA	3 cut(s)	659, 671, 734
AjnI	CCWGG	1 cut(s)	83
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	6 cut(s)	15, 106, 348, 553, 674, 744
AluI	AGCT	6 cut(s)	15, 106, 348, 553, 674, 744
Alw21I	GWGCWC	3 cut(s)	108, 350, 422
Alw26I	GTCTC	4 cut(s)	172, 208, 253, 299
AlwI	GGATC	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	2 cut(s)	33, 720
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	5 cut(s)	50, 77, 158, 464, 665
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	5 cut(s)	133, 302, 319, 424, 452
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	615
BalI	TGGCCA	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	2 cut(s)	108, 350
Bbv12I	GWGCWC	3 cut(s)	108, 350, 422
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	86, 248
BceAI	ACGGC	1 cut(s)	652
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	4 cut(s)	172, 208, 253, 299
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	2 cut(s)	190, 334
BpuEI	CTTGAG	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	2 cut(s)	198, 360
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	8 cut(s)	271, 301, 368, 398, 440, 458, 470, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 84, 373
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	3 cut(s)	57, 84, 373
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	3 cut(s)	116, 389, 665
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	4 cut(s)	75, 165, 464, 663
BshFI	GGCC	2 cut(s)	35, 722
BshNI	GGYRCC	1 cut(s)	610
BsiHKAI	GWGCWC	3 cut(s)	108, 350, 422
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	6 cut(s)	195, 426, 459, 545, 580, 597
BslFI	GGGAC	2 cut(s)	250, 350
BslI	CCNNNNNNNGG	3 cut(s)	57, 84, 373
BsmAI	GTCTC	4 cut(s)	172, 208, 253, 299
BsmBI	CGTCTC	3 cut(s)	172, 208, 253
BsmFI	GGGAC	2 cut(s)	250, 350
BsnI	GGCC	2 cut(s)	35, 722
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	4 cut(s)	108, 350, 422, 615
Bsp143I	GATC	4 cut(s)	319, 399, 430, 625
BspANI	GGCC	2 cut(s)	35, 722
BspFNI	CGCG	4 cut(s)	75, 165, 464, 663
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	319, 399, 430, 625
BssNI	GRCGYC	2 cut(s)	198, 360
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	5 cut(s)	95, 194, 260, 686, 705
BstACI	GRCGYC	2 cut(s)	198, 360
BstC8I	GCNNGC	2 cut(s)	46, 427
BstFNI	CGCG	4 cut(s)	75, 165, 464, 663
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	5 cut(s)	50, 77, 158, 464, 665
BstKTI	GATC	4 cut(s)	322, 402, 433, 628
BstMAI	GTCTC	4 cut(s)	172, 208, 253, 299
BstMBI	GATC	4 cut(s)	319, 399, 430, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 153, 162, 426, 671
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	4 cut(s)	75, 165, 464, 663
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	35, 722
BtgZI	GCGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	46, 427
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	5 cut(s)	50, 77, 158, 464, 665
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	2 cut(s)	154, 187
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	9, 52, 704
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	4 cut(s)	321, 401, 432, 627
DpnII	GATC	4 cut(s)	319, 399, 430, 625
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	5 cut(s)	95, 194, 260, 686, 705
EarI	CTCTTC	5 cut(s)	95, 194, 260, 686, 705
EciI	GGCGGA	2 cut(s)	83, 173
Ecl136II	GAGCTC	2 cut(s)	106, 348
Eco24I	GRGCYC	2 cut(s)	108, 350
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	2 cut(s)	106, 348
Eco57I	CTGAAG	1 cut(s)	611
Eco88I	CYCGRG	1 cut(s)	481
EcoICRI	GAGCTC	2 cut(s)	106, 348
EcoRII	CCWGG	1 cut(s)	83
EcoT38I	GRGCYC	2 cut(s)	108, 350
Esp3I	CGTCTC	3 cut(s)	172, 208, 253
FaeI	CATG	3 cut(s)	12, 55, 707
FaiI	YATR	5 cut(s)	10, 53, 387, 705, 719
FaqI	GGGAC	2 cut(s)	250, 350
FatI	CATG	3 cut(s)	8, 51, 703
FauI	CCCGC	1 cut(s)	152
FblI	GTMKAC	2 cut(s)	21, 174
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	2 cut(s)	108, 350
Fsp4HI	GCNGC	1 cut(s)	117
GlaI	GCGC	5 cut(s)	49, 76, 157, 463, 664
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	2 cut(s)	190, 334
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	35, 722
HapII	CCGG	6 cut(s)	195, 426, 459, 545, 580, 597
HgaI	GACGC	2 cut(s)	154, 187
HhaI	GCGC	5 cut(s)	50, 77, 158, 464, 665
Hin1I	GRCGYC	2 cut(s)	198, 360
Hin1II	CATG	3 cut(s)	12, 55, 707
Hin6I	GCGC	5 cut(s)	48, 75, 156, 462, 663
HinP1I	GCGC	5 cut(s)	48, 75, 156, 462, 663
HincII	GTYRAC	2 cut(s)	22, 175
HindII	GTYRAC	2 cut(s)	22, 175
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	7 cut(s)	5, 307, 455, 467, 473, 479, 713
HpaII	CCGG	6 cut(s)	195, 426, 459, 545, 580, 597
HphI	GGTGA	5 cut(s)	133, 302, 319, 424, 452
Hpy166II	GTNNAC	4 cut(s)	22, 175, 327, 495
Hpy188I	TCNGA	5 cut(s)	409, 472, 478, 523, 565
Hpy188III	TCNNGA	4 cut(s)	304, 367, 629, 704
Hpy8I	GTNNAC	4 cut(s)	22, 175, 327, 495
Hpy99I	CGWCG	6 cut(s)	23, 176, 203, 335, 362, 365
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	2 cut(s)	27, 360
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 153, 162, 426, 671
HpySE526I	ACGT	2 cut(s)	27, 360
Hsp92I	GRCGYC	2 cut(s)	198, 360
Hsp92II	CATG	3 cut(s)	12, 55, 707
HspAI	GCGC	5 cut(s)	48, 75, 156, 462, 663
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	319, 399, 430, 625
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	12, 353
Lsp1109I	GCAGC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	27, 360
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	321, 401, 432, 627
MboI	GATC	4 cut(s)	319, 399, 430, 625
MboII	GAAGA	7 cut(s)	82, 181, 247, 629, 703, 719, 722
MhlI	GDGCHC	4 cut(s)	108, 350, 422, 615
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	1 cut(s)	574
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	6 cut(s)	301, 449, 473, 476, 482, 722
MmeI	TCCRAC	2 cut(s)	456, 543
Mox20I	TGGCCA	1 cut(s)	722
MreI	CGCCGGCG	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	722
MspI	CCGG	6 cut(s)	195, 426, 459, 545, 580, 597
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	4 cut(s)	75, 165, 464, 663
MwoI	GCNNNNNNNGC	5 cut(s)	41, 153, 162, 426, 671
NaeI	GCCGGC	1 cut(s)	427
NdeII	GATC	4 cut(s)	319, 399, 430, 625
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	3 cut(s)	12, 55, 707
NlaIV	GGNNCC	1 cut(s)	612
NmeAIII	GCCGAG	2 cut(s)	61, 127
NmuCI	GTSAC	1 cut(s)	353
PagI	TCATGA	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 33, 243
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	5
PflFI	GACNNNGTC	4 cut(s)	26, 359, 362, 517
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	6 cut(s)	301, 449, 473, 475, 481, 721
PpsI	GAGTC	6 cut(s)	301, 449, 473, 475, 481, 721
Psp124BI	GAGCTC	2 cut(s)	108, 350
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	135
PsyI	GACNNNGTC	4 cut(s)	26, 359, 362, 517
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	2 cut(s)	108, 350
SalI	GTCGAC	2 cut(s)	20, 173
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	4 cut(s)	319, 399, 430, 625
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	6 cut(s)	301, 449, 473, 476, 482, 722
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	4 cut(s)	108, 350, 422, 615
SgrAI	CRCCGGYG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
Sse9I	AATT	1 cut(s)	574
SstI	GAGCTC	2 cut(s)	108, 350
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	2 cut(s)	30, 363
TaqI	TCGA	5 cut(s)	21, 174, 297, 303, 344
TasI	AATT	1 cut(s)	574
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	667, 720
TspGWI	ACGGA	4 cut(s)	160, 348, 523, 584
TspRI	CASTG	1 cut(s)	358
Tth111I	GACNNNGTC	4 cut(s)	26, 359, 362, 517
VpaK11BI	GGWCC	1 cut(s)	135
XmiI	GTMKAC	2 cut(s)	21, 174
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.