Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Reverse (-)

12621756 .. 12622538

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACTCGTGCGGTTTCGACAACGTCAAGGCGGAGAAAGCCAGCGCCATGCGGAGGTACAACCGTCTCCGCACCATCGCCAGGCTTTTCCGCCTCGCCGAGCTCTGCGTCGCAGCCGTCTTGCTCTCCTGGACCTTCACTCGCCTCCCCTTCGCCCTCCGCATCTCCCTCGACTACCTCCGCCTCTTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTGGCCAAGTCCCGCAACGTCACCGCCTCCGCCTCCGCCTCCGCCTCGCCTCAGGATCCGAAGGACGACGTGGAGACTCAACTTTACGATGAGTTCACCAACAACTGCGGCGGAAAGATGTCGAACTCCGGTGACGACGTCCTCTCCAGTGTGAAAGAGGAGGTTGCGTATCAGGACAAGCAGATCATCTCCGAGGTGAACGCCGCCGATCCTAAACCTGAAACCGACCCGAACTCCGGCGCTGAGTCAGACTCGGACTCGGATTCGGGTTTGGAGTTTCCGAAAGCTATCCGGAGGACGAAGTCGGAGAAGTTCGAGAGAGTTGTTCCGGCGAAGCTAAAAAGGTCGGACACGGAGGATTGCCGGAAAATGCTGAGGTCCGGCGAGGAAACTGTGCCGGAAGATTTCGATCCAGAGGACGACTTGAGCAACGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATTGAGAAGCAGAAGAGGTTTCGTCATCAGGAAGAGTCTCTGGCCATTGTGCTTCAAAACCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

260

Amino Acids

29.12

Weight (kDa)

4.94

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
AccII	CGCG	1 cut(s)	699
AccIII	TCCGGA	1 cut(s)	543
AclWI	GGATC	4 cut(s)	302, 315, 455, 656
AcoI	YGGCCR	2 cut(s)	255, 756
AcyI	GRCGYC	2 cut(s)	195, 390
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	54, 81, 488
AgsI	TTSAA	2 cut(s)	707, 770
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	80, 128
AluBI	AGCT	5 cut(s)	103, 539, 589, 710, 780
AluI	AGCT	5 cut(s)	103, 539, 589, 710, 780
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	4 cut(s)	71, 250, 320, 756
AlwI	GGATC	4 cut(s)	302, 315, 455, 656
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	2 cut(s)	255, 756
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	4 cut(s)	47, 494, 699, 701
AspS9I	GGNCC	2 cut(s)	132, 630
AsuHPI	GGTGA	4 cut(s)	265, 340, 395, 460
AvaII	GGWCC	2 cut(s)	132, 630
AxyI	CCTNAGG	1 cut(s)	303
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	2 cut(s)	257, 758
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	105, 209
BauI	CACGAG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	83, 245
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	2 cut(s)	82, 130
BcoDI	GTCTC	4 cut(s)	71, 250, 320, 756
BfoI	RGCGCY	2 cut(s)	48, 495
BisI	GCNGC	3 cut(s)	114, 361, 456
BlsI	GCNGC	3 cut(s)	115, 362, 457
Bme1390I	CCNGG	2 cut(s)	82, 130
Bme18I	GGWCC	2 cut(s)	132, 630
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	132, 630
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	82, 130
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	697
BsaBI	GATNNNNATC	1 cut(s)	660
BsaHI	GRCGYC	2 cut(s)	195, 390
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	2 cut(s)	380, 543
BsaXI	ACNNNNNCTCC	6 cut(s)	380, 404, 410, 434, 470, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 81, 488
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	660
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	82, 130
BseDI	CCNNGG	1 cut(s)	444
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	3 cut(s)	54, 81, 488
BseMII	CTCAG	3 cut(s)	317, 486, 617
BseNI	ACTGG	1 cut(s)	399
BsePI	GCGCGC	1 cut(s)	697
BseRI	GAGGAG	2 cut(s)	425, 701
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	257, 758
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	8 cut(s)	192, 381, 489, 544, 581, 616, 633, 650
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	54, 81, 488
BsmAI	GTCTC	4 cut(s)	71, 250, 320, 756
BsmBI	CGTCTC	2 cut(s)	71, 250
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	257, 758
Bsp1286I	GDGCHC	2 cut(s)	105, 209
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	307, 435, 460, 661
BspANI	GGCC	2 cut(s)	257, 758
BspCNI	CTCAG	3 cut(s)	316, 487, 618
BspEI	TCCGGA	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	4 cut(s)	302, 315, 455, 656
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	444
BssHII	GCGCGC	1 cut(s)	697
BssMI	GATC	4 cut(s)	307, 435, 460, 661
BssNI	GRCGYC	2 cut(s)	195, 390
BssSI	CACGAG	1 cut(s)	7
Bst2BI	CACGAG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	82, 130
Bst4CI	ACNGT	2 cut(s)	65, 646
Bst6I	CTCTTC	4 cut(s)	191, 218, 722, 741
BstACI	GRCGYC	2 cut(s)	195, 390
BstC8I	GCNNGC	2 cut(s)	43, 699
BstDEI	CTNAG	3 cut(s)	303, 495, 626
BstFNI	CGCG	1 cut(s)	699
BstH2I	RGCGCY	2 cut(s)	48, 495
BstHHI	GCGC	4 cut(s)	47, 494, 699, 701
BstKTI	GATC	4 cut(s)	310, 438, 463, 664
BstMAI	GTCTC	4 cut(s)	71, 250, 320, 756
BstMBI	GATC	4 cut(s)	307, 435, 460, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 707
BstNI	CCWGG	2 cut(s)	82, 130
BstSCI	CCNGG	2 cut(s)	80, 128
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	257, 758
BtgZI	GCGATG	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	43, 699
CfoI	GCGC	4 cut(s)	47, 494, 699, 701
Cfr13I	GGNCC	2 cut(s)	132, 630
CseI	GACGC	2 cut(s)	97, 184
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	303, 495, 626
DpnI	GATC	4 cut(s)	309, 437, 462, 663
DpnII	GATC	4 cut(s)	307, 435, 460, 661
EaeI	YGGCCR	2 cut(s)	255, 756
Eam1104I	CTCTTC	4 cut(s)	191, 218, 722, 741
EarI	CTCTTC	4 cut(s)	191, 218, 722, 741
EciI	GGCGGA	7 cut(s)	47, 80, 170, 271, 277, 283, 378
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 209
Eco47I	GGWCC	2 cut(s)	132, 630
Eco53kI	GAGCTC	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	80, 128
EcoT38I	GRGCYC	2 cut(s)	105, 209
Esp3I	CGTCTC	2 cut(s)	71, 250
FaeI	CATG	1 cut(s)	52
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	48
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	114, 361, 456
FriOI	GRGCYC	2 cut(s)	105, 209
Fsp4HI	GCNGC	3 cut(s)	114, 361, 456
GlaI	GCGC	4 cut(s)	46, 493, 698, 700
GluI	GCNGC	3 cut(s)	114, 361, 456
GsuI	CTGGAG	1 cut(s)	382
HaeII	RGCGCY	2 cut(s)	48, 495
HaeIII	GGCC	2 cut(s)	257, 758
HapII	CCGG	8 cut(s)	192, 381, 489, 544, 581, 616, 633, 650
HgaI	GACGC	2 cut(s)	97, 184
HhaI	GCGC	4 cut(s)	47, 494, 699, 701
Hin1I	GRCGYC	2 cut(s)	195, 390
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	4 cut(s)	45, 492, 697, 699
HinP1I	GCGC	4 cut(s)	45, 492, 697, 699
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	7 cut(s)	5, 328, 497, 503, 509, 515, 749
HpaII	CCGG	8 cut(s)	192, 381, 489, 544, 581, 616, 633, 650
HphI	GGTGA	4 cut(s)	265, 340, 395, 460
Hpy166II	GTNNAC	2 cut(s)	348, 451
Hpy188I	TCNGA	8 cut(s)	312, 445, 502, 508, 514, 534, 559, 601
Hpy188III	TCNNGA	6 cut(s)	305, 425, 544, 568, 665, 743
Hpy8I	GTNNAC	2 cut(s)	348, 451
Hpy99I	CGWCG	4 cut(s)	113, 200, 323, 392
HpyAV	CCTTC	3 cut(s)	145, 160, 307
HpyCH4III	ACNGT	2 cut(s)	65, 646
HpyCH4IV	ACGT	4 cut(s)	24, 270, 321, 390
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 707
HpyF3I	CTNAG	3 cut(s)	303, 495, 626
HpySE526I	ACGT	4 cut(s)	24, 270, 321, 390
Hsp92I	GRCGYC	2 cut(s)	195, 390
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	4 cut(s)	45, 492, 697, 699
Kpn2I	TCCGGA	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	307, 435, 460, 661
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	4 cut(s)	24, 270, 321, 390
MaeIII	GTNAC	2 cut(s)	271, 383
MalI	GATC	4 cut(s)	309, 437, 462, 663
MboI	GATC	4 cut(s)	307, 435, 460, 661
MboII	GAAGA	6 cut(s)	178, 205, 211, 665, 739, 758
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	105, 209
MlsI	TGGCCA	2 cut(s)	257, 758
MluNI	TGGCCA	2 cut(s)	257, 758
MlyI	GAGTC	5 cut(s)	322, 497, 503, 506, 758
MmeI	TCCRAC	2 cut(s)	537, 579
Mox20I	TGGCCA	2 cut(s)	257, 758
MroI	TCCGGA	1 cut(s)	543
MscI	TGGCCA	2 cut(s)	257, 758
Msp20I	TGGCCA	2 cut(s)	257, 758
MspI	CCGG	8 cut(s)	192, 381, 489, 544, 581, 616, 633, 650
MspR9I	CCNGG	2 cut(s)	82, 130
MvaI	CCWGG	2 cut(s)	82, 130
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	2 cut(s)	38, 707
NdeII	GATC	4 cut(s)	307, 435, 460, 661
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	271, 383
PauI	GCGCGC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 240
PfeI	GAWTC	1 cut(s)	515
PflFI	GACNNNGTC	3 cut(s)	23, 389, 553
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	115, 362, 457
PleI	GAGTC	5 cut(s)	322, 497, 503, 505, 757
PpsI	GAGTC	5 cut(s)	322, 497, 503, 505, 757
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	80, 128
PspGI	CCWGG	2 cut(s)	80, 128
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	132, 630
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	3 cut(s)	23, 389, 553
PteI	GCGCGC	1 cut(s)	697
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	3 cut(s)	114, 361, 456
Sau3AI	GATC	4 cut(s)	307, 435, 460, 661
Sau96I	GGNCC	2 cut(s)	132, 630
SchI	GAGTC	5 cut(s)	322, 497, 503, 506, 758
ScrFI	CCNGG	2 cut(s)	82, 130
SduI	GDGCHC	2 cut(s)	105, 209
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	2 cut(s)	132, 630
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	80, 128
TaaI	ACNGT	2 cut(s)	65, 646
TaiI	ACGT	4 cut(s)	27, 273, 324, 393
TaqI	TCGA	6 cut(s)	18, 171, 203, 374, 567, 660
TauI	GCSGC	2 cut(s)	363, 458
TfiI	GAWTC	1 cut(s)	515
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	2 cut(s)	271, 383
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	271, 383
TspDTI	ATGAA	1 cut(s)	703
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	406
Tth111I	GACNNNGTC	3 cut(s)	23, 389, 553
VpaK11BI	GGWCC	2 cut(s)	132, 630
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.