Rmu_sc0000924.1_g000055

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000924.1
OG0009081
Physical Location & Seq
Forward (+)
191130 .. 191489
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000924.1_g000055.1.cds

Sequence Viewer

Length: 360 bp
atgagtgtcctcagaatctctcctccgacgaggacttctccgatcttatcactcttgcaggtctttcgtccccaaggccatgacaagtctggaaaccgaacctcgacaaaggcgcgaaggggagagatagaggaaagagaaagagagtcggcgccgagcctcaactacggcgcggtggagagagagagagagagagagagagaggaaagagacagtgcagaggaatcagaatcgggtttgaagtttctgaaagctattcgaaggacgaagtcgaaaaagttcgagagagttgctccggcgaagctaaaaaggtcggacaaatctgagagggatgagaggaagggggagagagagatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

119

Amino Acids

13.84

Weight (kDa)

10.11

Isoelectric Point (pI)

69.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 2 cut(s) 115, 173
AciI CCGC 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 152
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 2 cut(s) 254, 304
AluI AGCT 2 cut(s) 254, 304
Alw26I GTCTC 1 cut(s) 204
AoxI GGCC 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 3 cut(s) 115, 154, 173
AsuII TTCGAA 1 cut(s) 259
BanI GGYRCC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 272, 306
BcoDI GTCTC 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 153
BplI GAGNNNNNCTC 4 cut(s) 22, 54, 277, 309
Bpu14I TTCGAA 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 25, 315
BseRI GAGGAG 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 2 cut(s) 115, 173
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 78
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 2 cut(s) 42, 354
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 24, 316
BspFNI CGCG 2 cut(s) 115, 173
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 42, 354
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 11, 324
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 2 cut(s) 115, 173
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 3 cut(s) 115, 154, 173
BstKTI GATC 2 cut(s) 45, 357
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 42, 354
BstUI CGCG 2 cut(s) 115, 173
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 49
CfoI GCGC 3 cut(s) 115, 154, 173
CviAII CATG 1 cut(s) 80
CviJI RGCY 4 cut(s) 78, 159, 254, 304
CviKI_1 RGCY 4 cut(s) 78, 159, 254, 304
DdeI CTNAG 2 cut(s) 11, 324
DinI GGCGCC 1 cut(s) 153
DpnI GATC 2 cut(s) 44, 356
DpnII GATC 2 cut(s) 42, 354
Eco130I CCWWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 83
FaiI YATR 1 cut(s) 81
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 79
FokI GGATG 1 cut(s) 344
GlaI GCGC 3 cut(s) 114, 153, 172
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 296
HhaI GCGC 3 cut(s) 115, 154, 173
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 3 cut(s) 113, 152, 171
HinP1I GCGC 3 cut(s) 113, 152, 171
HinfI GANTC 4 cut(s) 15, 146, 224, 230
HpaII CCGG 1 cut(s) 296
Hpy188I TCNGA 8 cut(s) 14, 27, 42, 229, 249, 316, 325, 359
Hpy188III TCNNGA 2 cut(s) 90, 283
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 3 cut(s) 111, 255, 334
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 58, 218
HpyF3I CTNAG 2 cut(s) 11, 324
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 3 cut(s) 113, 152, 171
KasI GGCGCC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 42, 354
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 3 cut(s) 44, 75, 309
MalI GATC 2 cut(s) 44, 356
MboI GATC 2 cut(s) 42, 354
MflI RGATCY 1 cut(s) 354
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 2 cut(s) 50, 294
MroXI GAANNNNTTC 1 cut(s) 278
MspI CCGG 1 cut(s) 296
MvnI CGCG 2 cut(s) 115, 173
NarI GGCGCC 1 cut(s) 152
NdeII GATC 2 cut(s) 42, 354
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 180
NspV TTCGAA 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 3 cut(s) 15, 224, 230
PflFI GACNNNGTC 1 cut(s) 268
PleI GAGTC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 153
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 268
Sau3AI GATC 2 cut(s) 42, 354
SchI GAGTC 1 cut(s) 155
SetI ASST 5 cut(s) 63, 104, 256, 306, 314
SfoI GGCGCC 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 259
SsiI CCGC 1 cut(s) 173
SspDI GGCGCC 1 cut(s) 151
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 4 cut(s) 104, 259, 272, 282
TfiI GAWTC 3 cut(s) 15, 224, 230
TscAI CASTG 1 cut(s) 220
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.