Rroxscaffold_2G00141750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009081
Physical Location & Seq
Forward (+)
79988243 .. 79988965
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141750.1

Sequence Viewer

Length: 723 bp
ATGCGGAGGTATAACCGTGTCCGCACCATTGCCAGGCTTTTCCGCCTCGCCGAGCTCTGCGTAGCCGTCGTCTTGCTCTCCTGGACCTTCACTCGCCTCCCCTTCGCCCTCCGCATCTCCCTCGACTACCTCCGCCTCTTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTCGCCAAGTCCCGCAACGTCACCGCCTCCGCCTCGACTCAGGATCCGAAGGACGACTTGGAGACTCAGCTTTGCAATGAGTTCACCAACAACTGCGGCGGAAAGATGTCGAACTCCGGTAACGACGTCCTCTCCAGTGTGAAAGAGGAGGTTGTGTATCAGGACAAGCAGATCATCTCCGAGGTGAACGCCGCCGATCCTAAACCTGAAACCGACTCAAACTCCCGCGCTGGGTCAGACTCGGACTCGGACTCGGGTTTGGAGTTTCCGAAACCTATCCGGAGGACGAAATCGGAGAAGTTAGTGAGAGTCGTTCCGGCGAAGCTAAAAAGGTCGCACACCGAGGATTGCCGGAAAATGCTGAGATCCGGCGAGAAAACTGTGCCGGAAGATTTCGATCCAGAGGATGACTTGAGCAACGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATTGAGAAGCAGAAGAGGTTTCGTCATCAGGAAGAGTCTCTGGCCATTGTGCTTCAAAACCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

6.76

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccII CGCG 2 cut(s) 432, 639
AccIII TCCGGA 1 cut(s) 483
AclWI GGATC 5 cut(s) 242, 255, 395, 564, 596
AcoI YGGCCR 1 cut(s) 696
AcyI GRCGYC 2 cut(s) 147, 330
AfiI CCNNNNNNNGG 2 cut(s) 33, 435
AgsI TTSAA 2 cut(s) 647, 710
AjnI CCWGG 2 cut(s) 32, 80
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 55, 274, 529, 650, 720
AluI AGCT 5 cut(s) 55, 274, 529, 650, 720
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 3 cut(s) 202, 260, 696
AlwI GGATC 5 cut(s) 242, 255, 395, 564, 596
Ama87I CYCGRG 1 cut(s) 457
Aor13HI TCCGGA 1 cut(s) 483
AoxI GGCC 1 cut(s) 696
AspLEI GCGC 3 cut(s) 434, 639, 641
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 217, 280, 400
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 698
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 2 cut(s) 57, 161
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 34, 82
BcoDI GTCTC 3 cut(s) 202, 260, 696
BisI GCNGC 2 cut(s) 301, 396
BlsI GCNGC 2 cut(s) 302, 397
Bme1390I CCNGG 2 cut(s) 34, 82
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 34, 82
BmsI GCATC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 2 cut(s) 147, 330
BsaJI CCNNGG 2 cut(s) 384, 546
BsaWI WCCGGW 2 cut(s) 320, 483
BsaXI ACNNNNNCTCC 6 cut(s) 320, 344, 350, 374, 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 435
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 2 cut(s) 27, 286
Bse8I GATNNNNATC 1 cut(s) 600
BseAI TCCGGA 1 cut(s) 483
BseBI CCWGG 2 cut(s) 34, 82
BseDI CCNNGG 2 cut(s) 384, 546
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 2 cut(s) 33, 435
BseMI GCAATG 2 cut(s) 27, 286
BseMII CTCAG 3 cut(s) 257, 284, 557
BseNI ACTGG 1 cut(s) 339
BsePI GCGCGC 1 cut(s) 637
BseRI GAGGAG 2 cut(s) 365, 641
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 2 cut(s) 432, 639
BshFI GGCC 1 cut(s) 698
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 7 cut(s) 144, 321, 484, 521, 556, 573, 590
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 33, 435
BsmAI GTCTC 3 cut(s) 202, 260, 696
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 698
BsoBI CYCGRG 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 57, 161
Bsp13I TCCGGA 1 cut(s) 483
Bsp143I GATC 5 cut(s) 247, 375, 400, 569, 601
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 3 cut(s) 256, 283, 558
BspEI TCCGGA 1 cut(s) 483
BspFNI CGCG 2 cut(s) 432, 639
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 5 cut(s) 242, 255, 395, 564, 596
BsrDI GCAATG 2 cut(s) 27, 286
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 384, 546
BssHII GCGCGC 1 cut(s) 637
BssMI GATC 5 cut(s) 247, 375, 400, 569, 601
BssNI GRCGYC 2 cut(s) 147, 330
Bst2UI CCWGG 2 cut(s) 34, 82
Bst4CI ACNGT 2 cut(s) 17, 586
Bst6I CTCTTC 5 cut(s) 143, 170, 209, 662, 681
BstACI GRCGYC 2 cut(s) 147, 330
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 243, 270, 566
BstF5I GGATG 1 cut(s) 616
BstFNI CGCG 2 cut(s) 432, 639
BstHHI GCGC 3 cut(s) 434, 639, 641
BstKTI GATC 5 cut(s) 250, 378, 403, 572, 604
BstMAI GTCTC 3 cut(s) 202, 260, 696
BstMBI GATC 5 cut(s) 247, 375, 400, 569, 601
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 2 cut(s) 34, 82
BstSCI CCNGG 2 cut(s) 32, 80
BstUI CGCG 2 cut(s) 432, 639
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 2 cut(s) 247, 569
BstYI RGATCY 2 cut(s) 247, 569
BsuRI GGCC 1 cut(s) 698
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 639
CfoI GCGC 3 cut(s) 434, 639, 641
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 1 cut(s) 136
CviJI RGCY 9 cut(s) 37, 55, 65, 159, 274, 529, 650, 698, 720
CviKI_1 RGCY 9 cut(s) 37, 55, 65, 159, 274, 529, 650, 698, 720
DdeI CTNAG 3 cut(s) 243, 270, 566
DpnI GATC 5 cut(s) 249, 377, 402, 571, 603
DpnII GATC 5 cut(s) 247, 375, 400, 569, 601
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 5 cut(s) 143, 170, 209, 662, 681
EarI CTCTTC 5 cut(s) 143, 170, 209, 662, 681
EciI GGCGGA 4 cut(s) 32, 122, 223, 318
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 2 cut(s) 57, 161
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 32, 80
EcoT38I GRGCYC 2 cut(s) 57, 161
Esp3I CGTCTC 1 cut(s) 202
FaiI YATR 1 cut(s) 12
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 199
FauI CCCGC 2 cut(s) 224, 437
Fnu4HI GCNGC 2 cut(s) 301, 396
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 2 cut(s) 57, 161
Fsp4HI GCNGC 2 cut(s) 301, 396
GlaI GCGC 3 cut(s) 433, 638, 640
GluI GCNGC 2 cut(s) 301, 396
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 698
HapII CCGG 7 cut(s) 144, 321, 484, 521, 556, 573, 590
HgaI GACGC 1 cut(s) 136
HhaI GCGC 3 cut(s) 434, 639, 641
Hin1I GRCGYC 2 cut(s) 147, 330
Hin6I GCGC 3 cut(s) 432, 637, 639
HinP1I GCGC 3 cut(s) 432, 637, 639
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 8 cut(s) 241, 268, 419, 443, 449, 455, 513, 689
HpaII CCGG 7 cut(s) 144, 321, 484, 521, 556, 573, 590
HphI GGTGA 3 cut(s) 217, 280, 400
Hpy166II GTNNAC 2 cut(s) 288, 391
Hpy188I TCNGA 7 cut(s) 252, 385, 442, 448, 454, 474, 499
Hpy188III TCNNGA 5 cut(s) 245, 365, 484, 605, 683
Hpy8I GTNNAC 2 cut(s) 288, 391
Hpy99I CGWCG 3 cut(s) 71, 152, 332
HpyAV CCTTC 3 cut(s) 97, 112, 247
HpyCH4III ACNGT 2 cut(s) 17, 586
HpyCH4IV ACGT 2 cut(s) 222, 330
HpyCH4V TGCA 2 cut(s) 183, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 3 cut(s) 243, 270, 566
HpySE526I ACGT 2 cut(s) 222, 330
Hsp92I GRCGYC 2 cut(s) 147, 330
HspAI GCGC 3 cut(s) 432, 637, 639
Kpn2I TCCGGA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 247, 375, 400, 569, 601
LweI GCATC 1 cut(s) 123
MaeII ACGT 2 cut(s) 222, 330
MaeIII GTNAC 2 cut(s) 223, 323
MalI GATC 5 cut(s) 249, 377, 402, 571, 603
MboI GATC 5 cut(s) 247, 375, 400, 569, 601
MboII GAAGA 7 cut(s) 130, 157, 163, 196, 605, 679, 698
MflI RGATCY 2 cut(s) 247, 569
MhlI GDGCHC 2 cut(s) 57, 161
MlsI TGGCCA 1 cut(s) 698
MluNI TGGCCA 1 cut(s) 698
MlyI GAGTC 8 cut(s) 235, 262, 413, 437, 443, 449, 522, 698
Mox20I TGGCCA 1 cut(s) 698
MroI TCCGGA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 698
MspI CCGG 7 cut(s) 144, 321, 484, 521, 556, 573, 590
MspR9I CCNGG 2 cut(s) 34, 82
MvaI CCWGG 2 cut(s) 34, 82
MvnI CGCG 2 cut(s) 432, 639
MwoI GCNNNNNNNGC 1 cut(s) 647
NdeII GATC 5 cut(s) 247, 375, 400, 569, 601
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 223
PauI GCGCGC 1 cut(s) 637
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 192
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 2 cut(s) 302, 397
PleI GAGTC 8 cut(s) 235, 262, 413, 437, 443, 449, 521, 697
PpsI GAGTC 8 cut(s) 235, 262, 413, 437, 443, 449, 521, 697
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 32, 80
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 32, 80
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 247, 569
PteI GCGCGC 1 cut(s) 637
SacI GAGCTC 1 cut(s) 57
SatI GCNGC 2 cut(s) 301, 396
Sau3AI GATC 5 cut(s) 247, 375, 400, 569, 601
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 8 cut(s) 235, 262, 413, 437, 443, 449, 522, 698
ScrFI CCNGG 2 cut(s) 34, 82
SduI GDGCHC 2 cut(s) 57, 161
SfaNI GCATC 1 cut(s) 123
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 32, 80
TaaI ACNGT 2 cut(s) 17, 586
TaiI ACGT 2 cut(s) 225, 333
TaqI TCGA 5 cut(s) 123, 155, 239, 314, 600
TauI GCSGC 2 cut(s) 303, 398
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 643
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 84
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.