RLG00000017022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009081
Physical Location & Seq
Reverse (-)
12203273 .. 12204037
765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017022

Sequence Viewer

Length: 765 bp
ATGGACTCGCGCAGTTTCGACAACGTCAAGGCGGAGAAAGCCAGCGCCATGCGGAGGTACAACCGTCTCCGCACCATCGCCAGGCTTTTCCGCCTCGCCGAGCTCTGCGTCGCCGCCGTCTTGCTCTCCTGGACCTTCACTCGCCTCCCCTTCGCCCTCCGCATCTCCATCGACTACCTCCGCCTCTTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTCGCCAAGTCCCGCAACGCCTCCGCCTCGCCTCAGGATCCCAAGGACGACGTGGAGACTCAGCTTTACGATGACTTCACCAACAACTGCGGCGGAAAGATGTCGAACTCCGGTAACGACGTCGTCTCCACTGTGAAAGAGGAGGTTGTGTATCAGGACAAGCAGATCATCTCCGAGGTGAACGCCGCCGATCCTAAACCCGAAACCGACCCGAACTCCGGCGCTGGGTCAGACTCGGACTCGGATTCGGGTTTGGAGTTTCCGAAAGCTATCCGGAGGACGAAGTCGGAGAAGTTCGAGAGAGTTGTTCCGGCGAAGCTCAAAAGGTCGGACACCGAGGATTGCCGGAAAATGCTGAGGTCCGGCGAGGAAACTGTGCCGGAAGATTTCGATCCAGAGGACGACTTGAGCAACGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATTGAGAAGCAGAAGAGGTTTCGTCATCAGGAAGAGTCTCAGGCCATTGTGCTTCAAAACCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

255

Amino Acids

28.68

Weight (kDa)

5.14

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
AccII CGCG 2 cut(s) 10, 681
AccIII TCCGGA 1 cut(s) 525
AclWI GGATC 4 cut(s) 284, 297, 437, 638
AcyI GRCGYC 2 cut(s) 195, 372
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 4 cut(s) 54, 81, 470, 477
AgsI TTSAA 2 cut(s) 689, 752
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 80, 128
AluBI AGCT 6 cut(s) 103, 316, 521, 571, 692, 762
AluI AGCT 6 cut(s) 103, 316, 521, 571, 692, 762
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 5 cut(s) 71, 250, 302, 382, 738
AlwI GGATC 4 cut(s) 284, 297, 437, 638
Aor13HI TCCGGA 1 cut(s) 525
AoxI GGCC 1 cut(s) 738
AspLEI GCGC 5 cut(s) 12, 47, 476, 681, 683
AspS9I GGNCC 2 cut(s) 132, 612
AsuHPI GGTGA 2 cut(s) 322, 442
AvaII GGWCC 2 cut(s) 132, 612
AxyI CCTNAGG 1 cut(s) 285
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BamHI GGATCC 1 cut(s) 289
BanII GRGCYC 2 cut(s) 105, 209
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 83, 176, 245
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 2 cut(s) 82, 130
BcoDI GTCTC 5 cut(s) 71, 250, 302, 382, 738
BfoI RGCGCY 2 cut(s) 48, 477
BisI GCNGC 3 cut(s) 114, 343, 438
BlsI GCNGC 3 cut(s) 115, 344, 439
Bme1390I CCNGG 2 cut(s) 82, 130
Bme18I GGWCC 2 cut(s) 132, 612
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 132, 612
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 2 cut(s) 82, 130
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 679
BsaBI GATNNNNATC 1 cut(s) 642
BsaHI GRCGYC 2 cut(s) 195, 372
BsaJI CCNNGG 3 cut(s) 294, 426, 588
BsaWI WCCGGW 2 cut(s) 362, 525
BsaXI ACNNNNNCTCC 6 cut(s) 362, 386, 392, 416, 452, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 81, 470, 477
Bse21I CCTNAGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 525
BseBI CCWGG 2 cut(s) 82, 130
BseDI CCNNGG 3 cut(s) 294, 426, 588
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 4 cut(s) 54, 81, 470, 477
BseMII CTCAG 4 cut(s) 299, 326, 599, 749
BsePI GCGCGC 1 cut(s) 679
BseRI GAGGAG 2 cut(s) 407, 683
BseYI CCCAGC 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 10, 681
BshFI GGCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 8 cut(s) 192, 363, 471, 526, 563, 598, 615, 632
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 4 cut(s) 54, 81, 470, 477
BsmAI GTCTC 5 cut(s) 71, 250, 302, 382, 738
BsmBI CGTCTC 3 cut(s) 71, 250, 382
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 1 cut(s) 740
Bsp1286I GDGCHC 2 cut(s) 105, 209
Bsp13I TCCGGA 1 cut(s) 525
Bsp143I GATC 4 cut(s) 289, 417, 442, 643
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 4 cut(s) 298, 325, 600, 748
BspEI TCCGGA 1 cut(s) 525
BspFNI CGCG 2 cut(s) 10, 681
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 4 cut(s) 284, 297, 437, 638
BssECI CCNNGG 3 cut(s) 294, 426, 588
BssHII GCGCGC 1 cut(s) 679
BssMI GATC 4 cut(s) 289, 417, 442, 643
BssNI GRCGYC 2 cut(s) 195, 372
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 82, 130
Bst4CI ACNGT 3 cut(s) 65, 385, 628
Bst6I CTCTTC 5 cut(s) 191, 218, 257, 704, 723
BstACI GRCGYC 2 cut(s) 195, 372
BstC8I GCNNGC 2 cut(s) 43, 681
BstDEI CTNAG 4 cut(s) 285, 312, 608, 735
BstFNI CGCG 2 cut(s) 10, 681
BstH2I RGCGCY 2 cut(s) 48, 477
BstHHI GCGC 5 cut(s) 12, 47, 476, 681, 683
BstKTI GATC 4 cut(s) 292, 420, 445, 646
BstMAI GTCTC 5 cut(s) 71, 250, 302, 382, 738
BstMBI GATC 4 cut(s) 289, 417, 442, 643
BstMWI GCNNNNNNNGC 2 cut(s) 38, 689
BstNI CCWGG 2 cut(s) 82, 130
BstSCI CCNGG 2 cut(s) 80, 128
BstUI CGCG 2 cut(s) 10, 681
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 43, 681
CfoI GCGC 5 cut(s) 12, 47, 476, 681, 683
Cfr13I GGNCC 2 cut(s) 132, 612
CseI GACGC 2 cut(s) 97, 184
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 49
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 4 cut(s) 285, 312, 608, 735
DpnI GATC 4 cut(s) 291, 419, 444, 645
DpnII GATC 4 cut(s) 289, 417, 442, 643
Eam1104I CTCTTC 5 cut(s) 191, 218, 257, 704, 723
EarI CTCTTC 5 cut(s) 191, 218, 257, 704, 723
EciI GGCGGA 5 cut(s) 47, 80, 170, 265, 360
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 105, 209
Eco47I GGWCC 2 cut(s) 132, 612
Eco53kI GAGCTC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 80, 128
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 105, 209
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 3 cut(s) 71, 250, 382
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 3 cut(s) 114, 343, 438
FriOI GRGCYC 2 cut(s) 105, 209
Fsp4HI GCNGC 3 cut(s) 114, 343, 438
GlaI GCGC 5 cut(s) 11, 46, 475, 680, 682
GluI GCNGC 3 cut(s) 114, 343, 438
GsaI CCCAGC 1 cut(s) 480
HaeII RGCGCY 2 cut(s) 48, 477
HaeIII GGCC 1 cut(s) 740
HapII CCGG 8 cut(s) 192, 363, 471, 526, 563, 598, 615, 632
HgaI GACGC 2 cut(s) 97, 184
HhaI GCGC 5 cut(s) 12, 47, 476, 681, 683
Hin1I GRCGYC 2 cut(s) 195, 372
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 5 cut(s) 10, 45, 474, 679, 681
HinP1I GCGC 5 cut(s) 10, 45, 474, 679, 681
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 6 cut(s) 5, 310, 485, 491, 497, 731
HpaII CCGG 8 cut(s) 192, 363, 471, 526, 563, 598, 615, 632
HphI GGTGA 2 cut(s) 322, 442
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 7 cut(s) 427, 484, 490, 496, 516, 541, 583
Hpy188III TCNNGA 6 cut(s) 287, 407, 526, 550, 647, 725
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 5 cut(s) 113, 200, 305, 374, 377
HpyAV CCTTC 2 cut(s) 145, 160
HpyCH4III ACNGT 3 cut(s) 65, 385, 628
HpyCH4IV ACGT 3 cut(s) 24, 303, 372
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 689
HpyF3I CTNAG 4 cut(s) 285, 312, 608, 735
HpySE526I ACGT 3 cut(s) 24, 303, 372
Hsp92I GRCGYC 2 cut(s) 195, 372
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 5 cut(s) 10, 45, 474, 679, 681
Kpn2I TCCGGA 1 cut(s) 525
Kzo9I GATC 4 cut(s) 289, 417, 442, 643
LweI GCATC 1 cut(s) 171
MaeII ACGT 3 cut(s) 24, 303, 372
MaeIII GTNAC 1 cut(s) 365
MalI GATC 4 cut(s) 291, 419, 444, 645
MboI GATC 4 cut(s) 289, 417, 442, 643
MboII GAAGA 7 cut(s) 178, 205, 211, 244, 647, 721, 740
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 105, 209
MlyI GAGTC 4 cut(s) 304, 479, 485, 740
MmeI TCCRAC 2 cut(s) 519, 561
MroI TCCGGA 1 cut(s) 525
MspI CCGG 8 cut(s) 192, 363, 471, 526, 563, 598, 615, 632
MspR9I CCNGG 2 cut(s) 82, 130
MvaI CCWGG 2 cut(s) 82, 130
MvnI CGCG 2 cut(s) 10, 681
MwoI GCNNNNNNNGC 2 cut(s) 38, 689
NdeII GATC 4 cut(s) 289, 417, 442, 643
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 291
NmeAIII GCCGAG 1 cut(s) 124
PauI GCGCGC 1 cut(s) 679
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 240
PfeI GAWTC 1 cut(s) 497
PflFI GACNNNGTC 3 cut(s) 23, 374, 535
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 3 cut(s) 115, 344, 439
PleI GAGTC 4 cut(s) 304, 479, 485, 739
PpsI GAGTC 4 cut(s) 304, 479, 485, 739
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 80, 128
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 2 cut(s) 80, 128
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 132, 612
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 3 cut(s) 23, 374, 535
PteI GCGCGC 1 cut(s) 679
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 3 cut(s) 114, 343, 438
Sau3AI GATC 4 cut(s) 289, 417, 442, 643
Sau96I GGNCC 2 cut(s) 132, 612
SchI GAGTC 4 cut(s) 304, 479, 485, 740
ScrFI CCNGG 2 cut(s) 82, 130
SduI GDGCHC 2 cut(s) 105, 209
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 2 cut(s) 132, 612
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 80, 128
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 65, 385, 628
TaiI ACGT 3 cut(s) 27, 306, 375
TaqI TCGA 6 cut(s) 18, 171, 203, 356, 549, 642
TauI GCSGC 3 cut(s) 116, 345, 440
TfiI GAWTC 1 cut(s) 497
TscAI CASTG 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 685
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 3 cut(s) 23, 374, 535
VpaK11BI GGWCC 2 cut(s) 132, 612
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.