Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Reverse (-)

11911552 .. 11912298

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1143400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGGTCGTGGGATTTTGACACCGTGAAGGCAGAGAAAACCAGCGCCATGCGGAGGTACAACCGCCTCCGCACTGCCGCTAAGCTCTTTCGCTTCGCTGAAATTGGCGCGGGCATCCTCTTCCTCTCCTGGACCTTCGCCCGCCTCCCCTTCGCCCTCACCATCTCCCGCGACTACTTCCTTCTCCTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCCTCTGTCACGTTATCATCGCCTCTTTAGTCCTCAAGTCCCGTCACGTCAGCTCGACCGATCGTAGTAACGACGCCGTGGAGGCCGAACTCTACGCGGAATTCGTCGAAAGCAGCGCCGGAGGAGCCGATAGTAAGTCTCAGCTACAAGACAACGTCGTTCCGCGCGAGGCAGAGGAGGTTGTGTACCAGGACAAGCAGATCGTTTCGGAGGTGAACTCGGCGGACCCTAAACCGGAAACTGAGTCGAACTCGGACTCTGACTCGGAGATCACGAAGATCATTCGGAGGACGAAATCGGAGAAGTTCGAGAAAAAGCCTGTACCGGCAAAGCTGCGGAGATCGGAGACGGAGCTTTGCCGGAAAACGGTGAGGTCCAGAAAGGAATGTGCGGCCGAAGATACGGAGGAGGAGGACGATTTGAGCAACGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATAGAGAAGCAGCTGAAGTTTCGTCACCAGGAGTCTCAGGCCATTGTTCTGAAGAACCAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

249

Amino Acids

28.17

Weight (kDa)

5.64

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	110, 171, 320, 388, 390, 666
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	2 cut(s)	195, 297
AfaI	GTAC	3 cut(s)	59, 410, 546
AfiI	CCNNNNNNNGG	3 cut(s)	54, 457, 589
AgsI	TTSAA	1 cut(s)	674
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	128, 411, 708
AluBI	AGCT	8 cut(s)	85, 276, 367, 556, 577, 677, 694, 744
AluI	AGCT	8 cut(s)	85, 276, 367, 556, 577, 677, 694, 744
Alw26I	GTCTC	3 cut(s)	366, 563, 720
AoxI	GGCC	3 cut(s)	306, 615, 720
ApeKI	GCWGC	3 cut(s)	336, 556, 691
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	6 cut(s)	47, 110, 341, 390, 666, 668
AspS9I	GGNCC	3 cut(s)	132, 448, 597
AsuHPI	GGTGA	4 cut(s)	151, 448, 604, 698
AvaII	GGWCC	3 cut(s)	132, 448, 597
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	348, 543, 703
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	130, 413, 710
BcoDI	GTCTC	3 cut(s)	366, 563, 720
BfoI	RGCGCY	2 cut(s)	48, 342
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	5 cut(s)	78, 337, 557, 615, 692
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	5 cut(s)	79, 338, 558, 616, 693
Bme1390I	CCNGG	3 cut(s)	130, 413, 710
Bme18I	GGWCC	3 cut(s)	132, 448, 597
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	132, 448, 597
BmiI	GGNNCC	2 cut(s)	349, 450
BmrFI	CCNGG	3 cut(s)	130, 413, 710
BmsI	GCATC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	4 cut(s)	425, 457, 458, 490
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	195, 297
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 457, 589
Bse118I	RCCGGY	1 cut(s)	547
BseBI	CCWGG	3 cut(s)	130, 413, 710
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	54, 457, 589
BseMII	CTCAG	3 cut(s)	377, 456, 731
BsePI	GCGCGC	1 cut(s)	664
BseRI	GAGGAG	7 cut(s)	176, 215, 360, 413, 644, 647, 668
BseX3I	CGGCCG	1 cut(s)	615
BseXI	GCAGC	3 cut(s)	348, 543, 703
Bsh1236I	CGCG	6 cut(s)	110, 171, 320, 388, 390, 666
Bsh1285I	CGRYCG	3 cut(s)	282, 286, 618
BshFI	GGCC	3 cut(s)	308, 617, 722
BsiEI	CGRYCG	3 cut(s)	282, 286, 618
BsiSI	CCGG	5 cut(s)	192, 342, 458, 548, 583
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	54, 457, 589
BsmAI	GTCTC	3 cut(s)	366, 563, 720
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	308, 617, 722
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	5 cut(s)	283, 423, 492, 501, 563
Bsp1720I	GCTNAGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	308, 617, 722
BspCNI	CTCAG	3 cut(s)	376, 457, 730
BspFNI	CGCG	6 cut(s)	110, 171, 320, 388, 390, 666
BspLI	GGNNCC	2 cut(s)	349, 450
BsrFI	RCCGGY	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	300
BssHII	GCGCGC	1 cut(s)	664
BssMI	GATC	5 cut(s)	283, 423, 492, 501, 563
BssNI	GRCGYC	2 cut(s)	195, 297
Bst2UI	CCWGG	3 cut(s)	130, 413, 710
Bst4CI	ACNGT	2 cut(s)	25, 592
Bst6I	CTCTTC	2 cut(s)	125, 218
BstACI	GRCGYC	2 cut(s)	195, 297
BstC8I	GCNNGC	3 cut(s)	112, 142, 666
BstDEI	CTNAG	4 cut(s)	81, 363, 465, 717
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	6 cut(s)	110, 171, 320, 388, 390, 666
BstH2I	RGCGCY	2 cut(s)	48, 342
BstHHI	GCGC	6 cut(s)	47, 110, 341, 390, 666, 668
BstKTI	GATC	5 cut(s)	286, 426, 495, 504, 566
BstMAI	GTCTC	3 cut(s)	366, 563, 720
BstMBI	GATC	5 cut(s)	283, 423, 492, 501, 563
BstMCI	CGRYCG	3 cut(s)	282, 286, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 347, 674
BstNI	CCWGG	3 cut(s)	130, 413, 710
BstSCI	CCNGG	3 cut(s)	128, 411, 708
BstUI	CGCG	6 cut(s)	110, 171, 320, 388, 390, 666
BstV1I	GCAGC	3 cut(s)	348, 543, 703
BstV2I	GAAGAC	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	308, 617, 722
BtgI	CCRYGG	1 cut(s)	300
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	112, 142, 666
CfoI	GCGC	6 cut(s)	47, 110, 341, 390, 666, 668
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	132, 448, 597
CseI	GACGC	2 cut(s)	184, 305
Csp6I	GTAC	3 cut(s)	58, 409, 545
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	3 cut(s)	58, 409, 545
DdeI	CTNAG	4 cut(s)	81, 363, 465, 717
DpnI	GATC	5 cut(s)	285, 425, 494, 503, 565
DpnII	GATC	5 cut(s)	283, 423, 492, 501, 563
EaeI	YGGCCR	1 cut(s)	615
EagI	CGGCCG	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	125, 218
EarI	CTCTTC	2 cut(s)	125, 218
EciI	GGCGGA	1 cut(s)	461
EclXI	CGGCCG	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	132, 448, 597
Eco52I	CGGCCG	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	128, 411, 708
EcoT38I	GRGCYC	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	1 cut(s)	52
FaiI	YATR	2 cut(s)	50, 683
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	48
FauI	CCCGC	3 cut(s)	103, 149, 176
Fnu4HI	GCNGC	5 cut(s)	78, 337, 557, 615, 692
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	5 cut(s)	78, 337, 557, 615, 692
GlaI	GCGC	6 cut(s)	46, 109, 340, 389, 665, 667
GluI	GCNGC	5 cut(s)	78, 337, 557, 615, 692
HaeII	RGCGCY	2 cut(s)	48, 342
HaeIII	GGCC	3 cut(s)	308, 617, 722
HapII	CCGG	5 cut(s)	192, 342, 458, 548, 583
HgaI	GACGC	2 cut(s)	184, 305
HhaI	GCGC	6 cut(s)	47, 110, 341, 390, 666, 668
Hin1I	GRCGYC	2 cut(s)	195, 297
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	6 cut(s)	45, 108, 339, 388, 664, 666
HinP1I	GCGC	6 cut(s)	45, 108, 339, 388, 664, 666
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	4 cut(s)	467, 479, 485, 713
HpaII	CCGG	5 cut(s)	192, 342, 458, 548, 583
HphI	GGTGA	4 cut(s)	151, 448, 604, 698
Hpy166II	GTNNAC	2 cut(s)	409, 439
Hpy188I	TCNGA	8 cut(s)	433, 478, 484, 490, 510, 523, 568, 732
Hpy188III	TCNNGA	3 cut(s)	496, 532, 600
Hpy8I	GTNNAC	2 cut(s)	409, 439
Hpy99I	CGWCG	4 cut(s)	200, 299, 332, 383
HpyAV	CCTTC	4 cut(s)	22, 145, 160, 191
HpyCH4III	ACNGT	2 cut(s)	25, 592
HpyCH4IV	ACGT	3 cut(s)	234, 270, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 347, 674
HpyF3I	CTNAG	4 cut(s)	81, 363, 465, 717
HpySE526I	ACGT	3 cut(s)	234, 270, 378
Hsp92I	GRCGYC	2 cut(s)	195, 297
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	6 cut(s)	45, 108, 339, 388, 664, 666
Kzo9I	GATC	5 cut(s)	283, 423, 492, 501, 563
LmnI	GCTCC	2 cut(s)	347, 574
Lsp1109I	GCAGC	3 cut(s)	348, 543, 703
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	3 cut(s)	234, 270, 378
MaeIII	GTNAC	4 cut(s)	230, 266, 290, 704
MalI	GATC	5 cut(s)	285, 425, 494, 503, 565
MboI	GATC	5 cut(s)	283, 423, 492, 501, 563
MboII	GAAGA	6 cut(s)	112, 205, 211, 511, 632, 745
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	2 cut(s)	102, 323
MlyI	GAGTC	4 cut(s)	473, 476, 479, 722
MspA1I	CMGCKG	1 cut(s)	694
MspI	CCGG	5 cut(s)	192, 342, 458, 548, 583
MspR9I	CCNGG	3 cut(s)	130, 413, 710
MvaI	CCWGG	3 cut(s)	130, 413, 710
MvnI	CGCG	6 cut(s)	110, 171, 320, 388, 390, 666
MwoI	GCNNNNNNNGC	3 cut(s)	305, 347, 674
NdeII	GATC	5 cut(s)	283, 423, 492, 501, 563
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	349, 450
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	3 cut(s)	230, 266, 704
PauI	GCGCGC	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 387, 494
PflFI	GACNNNGTC	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	79, 338, 558, 616, 693
Ple19I	CGATCG	1 cut(s)	286
PleI	GAGTC	4 cut(s)	473, 475, 479, 721
PpsI	GAGTC	4 cut(s)	473, 475, 479, 721
Psp6I	CCWGG	3 cut(s)	128, 411, 708
PspGI	CCWGG	3 cut(s)	128, 411, 708
PspN4I	GGNNCC	2 cut(s)	349, 450
PspPI	GGNCC	3 cut(s)	132, 448, 597
PsyI	GACNNNGTC	1 cut(s)	377
PteI	GCGCGC	1 cut(s)	664
PvuI	CGATCG	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	3 cut(s)	59, 410, 546
RsaNI	GTAC	3 cut(s)	58, 409, 545
SatI	GCNGC	5 cut(s)	78, 337, 557, 615, 692
Sau3AI	GATC	5 cut(s)	283, 423, 492, 501, 563
Sau96I	GGNCC	3 cut(s)	132, 448, 597
SchI	GAGTC	4 cut(s)	473, 476, 479, 722
ScrFI	CCNGG	3 cut(s)	130, 413, 710
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	123
SinI	GGWCC	3 cut(s)	132, 448, 597
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	102, 323
StyD4I	CCNGG	3 cut(s)	128, 411, 708
TaaI	ACNGT	2 cut(s)	25, 592
TaiI	ACGT	3 cut(s)	237, 273, 381
TaqI	TCGA	5 cut(s)	203, 278, 330, 470, 531
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	102, 323
TauI	GCSGC	2 cut(s)	80, 617
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	3 cut(s)	230, 266, 704
TseI	GCWGC	3 cut(s)	336, 556, 691
Tsp45I	GTSAC	3 cut(s)	230, 266, 704
TspDTI	ATGAA	1 cut(s)	670
TspGWI	ACGGA	2 cut(s)	587, 641
TspRI	CASTG	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	132, 448, 597
XapI	RAATTY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.