Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Forward (+)

2651648 .. 2652046

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATTCTTGGAGCTTCGTCGACAACATAAAGGCTGAGAAAGCCAGCGCCATGCGGAGGTACAACCTCCTCCGCACCATCGCCAGGCTCTTCCGCCTCGCCGCCGTCCTCCTCTCTTGGACCTTCTCCCACCTCCCCTTCGCCCTCCGCGTCTCCGTCGACTACCTCCGCCTCTTCTCCGGCATCGTCTCCAGCCCCCTCTTTGTTTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTTGCCAAGTCCCGCCACCTCGCCACTGCCCCTCCAAACATCGAAGTCGAGACTCACCTTTACGATCCAGTGACGACGGAAAGAAGTCGAGCTCCAGTGACGACGTCGTCTCGAAAGAGGAAGTTGTGTATGAGGACAAGCAAATCATCTCCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

10.9

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AatII	GACGTC	1 cut(s)	347
AccI	GTMKAC	2 cut(s)	21, 159
AccII	CGCG	1 cut(s)	150
AciI	CCGC	7 cut(s)	55, 73, 94, 102, 148, 169, 253
AclWI	GGATC	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	57, 84
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	15, 332
AluI	AGCT	2 cut(s)	15, 332
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	5 cut(s)	157, 193, 238, 284, 354
AlwI	GGATC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BccI	CCATC	2 cut(s)	86, 233
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	5 cut(s)	157, 193, 238, 284, 354
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	175, 318
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 84
Bse1I	ACTGG	2 cut(s)	308, 335
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	392
BseLI	CCNNNNNNNGG	2 cut(s)	57, 84
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	308, 335
BseRI	GAGGAG	2 cut(s)	59, 101
Bsh1236I	CGCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	2 cut(s)	57, 84
BsmAI	GTCTC	5 cut(s)	157, 193, 238, 284, 354
BsmBI	CGTCTC	4 cut(s)	157, 193, 238, 354
BsmFI	GGGAC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	7 cut(s)	55, 73, 94, 102, 148, 169, 253
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	308, 335
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	95, 179
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	5 cut(s)	157, 193, 238, 284, 354
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstUI	CGCG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	3 cut(s)	264, 315, 342
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	6 cut(s)	15, 35, 44, 88, 195, 332
CviKI_1	RGCY	6 cut(s)	15, 35, 44, 88, 195, 332
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	95, 179
EarI	CTCTTC	2 cut(s)	95, 179
EciI	GGCGGA	2 cut(s)	83, 158
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	334
Esp3I	CGTCTC	4 cut(s)	157, 193, 238, 354
FaeI	CATG	1 cut(s)	55
FaiI	YATR	3 cut(s)	29, 53, 371
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	2 cut(s)	21, 159
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	102
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	175, 318
HaeII	RGCGCY	1 cut(s)	51
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	22, 160
HindII	GTYRAC	2 cut(s)	22, 160
HinfI	GANTC	2 cut(s)	5, 292
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	22, 160
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	289, 351
Hpy8I	GTNNAC	2 cut(s)	22, 160
Hpy99I	CGWCG	5 cut(s)	23, 161, 319, 346, 349
HpyAV	CCTTC	2 cut(s)	133, 148
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	344
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	12, 337
LpnPI	CCDG	7 cut(s)	58, 70, 97, 193, 205, 321, 348
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	310, 337
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	82, 166
MhlI	GDGCHC	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	286
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	310, 337
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 228
PfeI	GAWTC	1 cut(s)	5
PflFI	GACNNNGTC	2 cut(s)	343, 346
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	120
PsyI	GACNNNGTC	2 cut(s)	343, 346
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	334
SalI	GTCGAC	2 cut(s)	20, 158
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	120
SsiI	CCGC	7 cut(s)	55, 73, 94, 102, 148, 169, 253
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	83
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	6 cut(s)	21, 159, 282, 288, 328, 352
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	3 cut(s)	271, 315, 342
TseFI	GTSAC	2 cut(s)	310, 337
Tsp45I	GTSAC	2 cut(s)	310, 337
TspGWI	ACGGA	2 cut(s)	145, 332
TspRI	CASTG	3 cut(s)	271, 315, 342
Tth111I	GACNNNGTC	2 cut(s)	343, 346
VpaK11BI	GGWCC	1 cut(s)	120
XmiI	GTMKAC	2 cut(s)	21, 159
ZraI	GACGTC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.