Rw2G011070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009081
Physical Location & Seq
Reverse (-)
11234935 .. 11236003
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011070.1

Sequence Viewer

Length: 777 bp
ATGGACTCGTGCAGTTTCGACAACGTCAAGGCGGAGAAAGCCAGCGCCATGCGGAGGTACAACCGTCTCCGCACCATCGCCAGGCTTTTCCGCCTCGCCGAGCTCTGCGTCGCCGCCGTCTTGCTCTCCTGGACCTTCACTCGCCTCCCCTTCGCCCTCCGCATCTCCCTCGACTACCTCCGCCTCTTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTCGCCAAGTCCCGCAACGTCACCGCCTCCGCCTCCGCCTCGCCTCAGGATCCGAAGGACGACGTGGAGACTCAACTTTACGATGAGTTCACCAACAACTGCGGCGGAAAGATGTCGAACTCCGGTGACGACGTCCTCTCCAATGTGAAAGAGGAGGTTGTGTATCAGGACAAGCAGATCATCTCCGAGGTGAACGCCGCCGATCCTAAACCTGAAACCGACTCGAACTCCGGCGCTGGGTCAGACTCGGACTCGGACTCTGGTTTGGAGTTTCCGAAAGCTATCCGGAGGACGAAATCGGAGAAGTTCGAGAGAGTTGTTCCGGCGAAGCTAAAAAGGTCGGACACCGAGGATTGCCGGAAAATGCTGAGGTCCGGCGAGGAAACTGTGCCGGAAGATTTCGATCCAGAGGACGACTTGAGCAATGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATTGAGAAGCAGAAGAGGTTTCGTCATCAGGAAGAGTCTCTGGCCATTGTGCTTCAAAACCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

258

Amino Acids

29.0

Weight (kDa)

4.99

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccII CGCG 1 cut(s) 693
AccIII TCCGGA 1 cut(s) 537
AclWI GGATC 4 cut(s) 296, 309, 449, 650
AcoI YGGCCR 1 cut(s) 750
AcyI GRCGYC 2 cut(s) 195, 384
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 54, 81, 489
AgsI TTSAA 2 cut(s) 701, 764
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 2 cut(s) 80, 128
AluBI AGCT 5 cut(s) 103, 533, 583, 704, 774
AluI AGCT 5 cut(s) 103, 533, 583, 704, 774
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 4 cut(s) 71, 250, 314, 750
AlwI GGATC 4 cut(s) 296, 309, 449, 650
Aor13HI TCCGGA 1 cut(s) 537
AoxI GGCC 1 cut(s) 750
AspLEI GCGC 4 cut(s) 47, 488, 693, 695
AspS9I GGNCC 2 cut(s) 132, 624
AsuHPI GGTGA 4 cut(s) 265, 334, 389, 454
AvaII GGWCC 2 cut(s) 132, 624
AxyI CCTNAGG 1 cut(s) 297
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BalI TGGCCA 1 cut(s) 752
BamHI GGATCC 1 cut(s) 301
BanII GRGCYC 2 cut(s) 105, 209
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 620
BccI CCATC 2 cut(s) 83, 245
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 2 cut(s) 82, 130
BcoDI GTCTC 4 cut(s) 71, 250, 314, 750
BfoI RGCGCY 2 cut(s) 48, 489
BisI GCNGC 3 cut(s) 114, 355, 450
BlsI GCNGC 3 cut(s) 115, 356, 451
Bme1390I CCNGG 2 cut(s) 82, 130
Bme18I GGWCC 2 cut(s) 132, 624
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 132, 624
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 82, 130
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 691
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 2 cut(s) 195, 384
BsaJI CCNNGG 2 cut(s) 438, 600
BsaWI WCCGGW 2 cut(s) 374, 537
BsaXI ACNNNNNCTCC 6 cut(s) 374, 398, 404, 428, 464, 494
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 81, 489
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 682
Bse8I GATNNNNATC 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 537
BseBI CCWGG 2 cut(s) 82, 130
BseDI CCNNGG 2 cut(s) 438, 600
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 3 cut(s) 54, 81, 489
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 2 cut(s) 311, 611
BsePI GCGCGC 1 cut(s) 691
BseRI GAGGAG 2 cut(s) 419, 695
BseYI CCCAGC 1 cut(s) 488
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 8 cut(s) 192, 375, 483, 538, 575, 610, 627, 644
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 54, 81, 489
BsmAI GTCTC 4 cut(s) 71, 250, 314, 750
BsmBI CGTCTC 2 cut(s) 71, 250
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 105, 209
Bsp13I TCCGGA 1 cut(s) 537
Bsp143I GATC 4 cut(s) 301, 429, 454, 655
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 2 cut(s) 310, 612
BspEI TCCGGA 1 cut(s) 537
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 4 cut(s) 296, 309, 449, 650
BsrDI GCAATG 1 cut(s) 682
BssECI CCNNGG 2 cut(s) 438, 600
BssHII GCGCGC 1 cut(s) 691
BssMI GATC 4 cut(s) 301, 429, 454, 655
BssNI GRCGYC 2 cut(s) 195, 384
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 82, 130
Bst4CI ACNGT 2 cut(s) 65, 640
Bst6I CTCTTC 5 cut(s) 191, 218, 257, 716, 735
BstACI GRCGYC 2 cut(s) 195, 384
BstC8I GCNNGC 2 cut(s) 43, 693
BstDEI CTNAG 2 cut(s) 297, 620
BstFNI CGCG 1 cut(s) 693
BstH2I RGCGCY 2 cut(s) 48, 489
BstHHI GCGC 4 cut(s) 47, 488, 693, 695
BstKTI GATC 4 cut(s) 304, 432, 457, 658
BstMAI GTCTC 4 cut(s) 71, 250, 314, 750
BstMBI GATC 4 cut(s) 301, 429, 454, 655
BstMWI GCNNNNNNNGC 2 cut(s) 38, 701
BstNI CCWGG 2 cut(s) 82, 130
BstSCI CCNGG 2 cut(s) 80, 128
BstUI CGCG 1 cut(s) 693
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 1 cut(s) 752
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 43, 693
CfoI GCGC 4 cut(s) 47, 488, 693, 695
Cfr13I GGNCC 2 cut(s) 132, 624
CseI GACGC 2 cut(s) 97, 184
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 49
CviJI RGCY 9 cut(s) 41, 85, 103, 207, 533, 583, 704, 752, 774
CviKI_1 RGCY 9 cut(s) 41, 85, 103, 207, 533, 583, 704, 752, 774
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 297, 620
DpnI GATC 4 cut(s) 303, 431, 456, 657
DpnII GATC 4 cut(s) 301, 429, 454, 655
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 5 cut(s) 191, 218, 257, 716, 735
EarI CTCTTC 5 cut(s) 191, 218, 257, 716, 735
EciI GGCGGA 6 cut(s) 47, 80, 170, 271, 277, 372
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 105, 209
Eco47I GGWCC 2 cut(s) 132, 624
Eco53kI GAGCTC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 80, 128
EcoT38I GRGCYC 2 cut(s) 105, 209
Esp3I CGTCTC 2 cut(s) 71, 250
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 3 cut(s) 114, 355, 450
FriOI GRGCYC 2 cut(s) 105, 209
Fsp4HI GCNGC 3 cut(s) 114, 355, 450
GlaI GCGC 4 cut(s) 46, 487, 692, 694
GluI GCNGC 3 cut(s) 114, 355, 450
GsaI CCCAGC 1 cut(s) 492
HaeII RGCGCY 2 cut(s) 48, 489
HaeIII GGCC 1 cut(s) 752
HapII CCGG 8 cut(s) 192, 375, 483, 538, 575, 610, 627, 644
HgaI GACGC 2 cut(s) 97, 184
HhaI GCGC 4 cut(s) 47, 488, 693, 695
Hin1I GRCGYC 2 cut(s) 195, 384
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 4 cut(s) 45, 486, 691, 693
HinP1I GCGC 4 cut(s) 45, 486, 691, 693
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 7 cut(s) 5, 322, 473, 497, 503, 509, 743
HpaII CCGG 8 cut(s) 192, 375, 483, 538, 575, 610, 627, 644
HphI GGTGA 4 cut(s) 265, 334, 389, 454
Hpy166II GTNNAC 2 cut(s) 342, 445
Hpy188I TCNGA 8 cut(s) 306, 439, 496, 502, 508, 528, 553, 595
Hpy188III TCNNGA 6 cut(s) 299, 419, 538, 562, 659, 737
Hpy8I GTNNAC 2 cut(s) 342, 445
Hpy99I CGWCG 4 cut(s) 113, 200, 317, 386
HpyAV CCTTC 3 cut(s) 145, 160, 301
HpyCH4III ACNGT 2 cut(s) 65, 640
HpyCH4IV ACGT 4 cut(s) 24, 270, 315, 384
HpyCH4V TGCA 2 cut(s) 12, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 701
HpyF3I CTNAG 2 cut(s) 297, 620
HpySE526I ACGT 4 cut(s) 24, 270, 315, 384
Hsp92I GRCGYC 2 cut(s) 195, 384
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 4 cut(s) 45, 486, 691, 693
Kpn2I TCCGGA 1 cut(s) 537
Kzo9I GATC 4 cut(s) 301, 429, 454, 655
LweI GCATC 1 cut(s) 171
MaeII ACGT 4 cut(s) 24, 270, 315, 384
MaeIII GTNAC 2 cut(s) 271, 377
MalI GATC 4 cut(s) 303, 431, 456, 657
MboI GATC 4 cut(s) 301, 429, 454, 655
MboII GAAGA 7 cut(s) 178, 205, 211, 244, 659, 733, 752
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 2 cut(s) 105, 209
MlsI TGGCCA 1 cut(s) 752
MluNI TGGCCA 1 cut(s) 752
MlyI GAGTC 6 cut(s) 316, 467, 491, 497, 503, 752
MmeI TCCRAC 1 cut(s) 573
Mox20I TGGCCA 1 cut(s) 752
MroI TCCGGA 1 cut(s) 537
MscI TGGCCA 1 cut(s) 752
Msp20I TGGCCA 1 cut(s) 752
MspI CCGG 8 cut(s) 192, 375, 483, 538, 575, 610, 627, 644
MspR9I CCNGG 2 cut(s) 82, 130
MvaI CCWGG 2 cut(s) 82, 130
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 2 cut(s) 38, 701
NdeII GATC 4 cut(s) 301, 429, 454, 655
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 271, 377
PauI GCGCGC 1 cut(s) 691
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 240
PflFI GACNNNGTC 2 cut(s) 23, 383
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 3 cut(s) 115, 356, 451
PleI GAGTC 6 cut(s) 316, 467, 491, 497, 503, 751
PpsI GAGTC 6 cut(s) 316, 467, 491, 497, 503, 751
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 80, 128
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 2 cut(s) 80, 128
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 132, 624
PsuI RGATCY 1 cut(s) 301
PsyI GACNNNGTC 2 cut(s) 23, 383
PteI GCGCGC 1 cut(s) 691
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 3 cut(s) 114, 355, 450
Sau3AI GATC 4 cut(s) 301, 429, 454, 655
Sau96I GGNCC 2 cut(s) 132, 624
SchI GAGTC 6 cut(s) 316, 467, 491, 497, 503, 752
ScrFI CCNGG 2 cut(s) 82, 130
SduI GDGCHC 2 cut(s) 105, 209
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 2 cut(s) 132, 624
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 80, 128
TaaI ACNGT 2 cut(s) 65, 640
TaiI ACGT 4 cut(s) 27, 273, 318, 387
TaqI TCGA 7 cut(s) 18, 171, 203, 368, 476, 561, 654
TauI GCSGC 3 cut(s) 116, 357, 452
TseFI GTSAC 2 cut(s) 271, 377
Tsp45I GTSAC 2 cut(s) 271, 377
TspDTI ATGAA 1 cut(s) 697
Tth111I GACNNNGTC 2 cut(s) 23, 383
VpaK11BI GGWCC 2 cut(s) 132, 624
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.