RchiOBHm_Chr2g0100901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009081
Physical Location & Seq
Reverse (-)
12713146 .. 12714341
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47552

Sequence Viewer

Length: 993 bp
ATGGTCCAGCACAGAGAAAAACTTCACTTCTCTCCAAGTAATAGCCTTCACCACCAAACACACACTCCCCCAAAACTCTCTCCCAGACTCCCACGCACTCACTCTGTACGGTCCAATCCACACTATTCCATATCGATCTTCAATCCAAATCCCATCTCTCCTTCCATATATCGATCTTCCTCCACTTCATTTCACTTCCTCTGTAAACATATTCTCTCTTTAATGGACTCGTGCAGTTTCGACAACGTCAAGGCGGAGAAAGCCAGCGCCATGCGGAGGTACAACCGTCTCCGCACCATCGCCAGGCTTTTCCGCCTCGCCGAGCTCTGCGTCGCCGCCGTCTTGCTCTCCTGGACCTTCACTCGCCTCCCCTTCGCCCTCCGCATCTCCCTCGACTACCTCCGCCTCTTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTCGCCAAGTCCCGCAACGTCACCGCCTCCGCCTCGCCTCAGGATCCGAAGGACGACGTGGAGACTCAACTTTACGATGAGTTCACCAACAACTGCGGCGGAAAGATGTCGAACTCCGGTGACGACGTCCTCTCCAGTGTGAAAGAGGAGGTTGTGTATCAGGACAAGCAGATCATCTCCGAGGTGAACGCCGCCGATCCTAAACCTGAAACCGACCCGAACTCCGGCGCTGAGTCAGACTCGGACTCGGATTCGGGTTTGGAGTTTCCGAAAGCTATCCGGAGGACGAAGTCGGAGAAGTTCGAGAGAGTTGTTCCGGCGAAGCTAAAAAGGTCGGACACGGAGCATTGCCGGAAAATGCTGAGGTCCGGCGAGGAAACTGTGCCGGAAGATTTCGATCCAGAGGACGACTTGAGCAACGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATTGAGAAGCAGAAGAGGTTTCGTCATCAGGAAGAGTCTCTGGCCATTGTGCTTCAAAACCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

330

Amino Acids

37.45

Weight (kDa)

6.84

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 603
AccII CGCG 1 cut(s) 909
AccIII TCCGGA 1 cut(s) 753
AclWI GGATC 4 cut(s) 512, 525, 665, 866
AcoI YGGCCR 1 cut(s) 966
AcyI GRCGYC 2 cut(s) 417, 600
AfaI GTAC 2 cut(s) 108, 281
AfiI CCNNNNNNNGG 3 cut(s) 276, 303, 698
AgsI TTSAA 3 cut(s) 142, 917, 980
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 2 cut(s) 302, 350
AluBI AGCT 5 cut(s) 325, 749, 799, 920, 990
AluI AGCT 5 cut(s) 325, 749, 799, 920, 990
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 4 cut(s) 293, 472, 530, 966
AlwI GGATC 4 cut(s) 512, 525, 665, 866
Aor13HI TCCGGA 1 cut(s) 753
AoxI GGCC 1 cut(s) 966
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 4 cut(s) 269, 704, 909, 911
AspS9I GGNCC 4 cut(s) 4, 111, 354, 840
AsuHPI GGTGA 5 cut(s) 41, 487, 550, 605, 670
AvaII GGWCC 4 cut(s) 4, 111, 354, 840
AxyI CCTNAGG 1 cut(s) 513
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BalI TGGCCA 1 cut(s) 968
BamHI GGATCC 1 cut(s) 517
BanII GRGCYC 2 cut(s) 327, 431
BauI CACGAG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 836
BccI CCATC 3 cut(s) 161, 305, 467
BceAI ACGGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 2 cut(s) 304, 352
BcoDI GTCTC 4 cut(s) 293, 472, 530, 966
BfoI RGCGCY 2 cut(s) 270, 705
BisI GCNGC 3 cut(s) 336, 571, 666
BlsI GCNGC 3 cut(s) 337, 572, 667
Bme1390I CCNGG 2 cut(s) 304, 352
Bme18I GGWCC 4 cut(s) 4, 111, 354, 840
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 4 cut(s) 4, 111, 354, 840
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 2 cut(s) 304, 352
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 433
BplI GAGNNNNNCTC 2 cut(s) 698, 730
BpmI CTGGAG 1 cut(s) 592
Bpu10I CCTNAGC 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 907
Bsa29I ATCGAT 2 cut(s) 134, 172
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 2 cut(s) 417, 600
BsaJI CCNNGG 1 cut(s) 654
BsaWI WCCGGW 2 cut(s) 590, 753
BsaXI ACNNNNNCTCC 8 cut(s) 49, 79, 590, 614, 620, 644, 680, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 303, 698
Bse1I ACTGG 1 cut(s) 609
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 870
BseAI TCCGGA 1 cut(s) 753
BseBI CCWGG 2 cut(s) 304, 352
BseCI ATCGAT 2 cut(s) 134, 172
BseDI CCNNGG 1 cut(s) 654
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 3 cut(s) 276, 303, 698
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 3 cut(s) 527, 696, 827
BseNI ACTGG 1 cut(s) 609
BsePI GCGCGC 1 cut(s) 907
BseRI GAGGAG 2 cut(s) 635, 911
BsgI GTGCAG 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 909
BshFI GGCC 1 cut(s) 968
BshVI ATCGAT 2 cut(s) 134, 172
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 8 cut(s) 414, 591, 699, 754, 791, 826, 843, 860
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 276, 303, 698
BsmAI GTCTC 4 cut(s) 293, 472, 530, 966
BsmBI CGTCTC 2 cut(s) 293, 472
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 1 cut(s) 968
Bsp1286I GDGCHC 2 cut(s) 327, 431
Bsp13I TCCGGA 1 cut(s) 753
Bsp143I GATC 6 cut(s) 135, 173, 517, 645, 670, 871
BspANI GGCC 1 cut(s) 968
BspCNI CTCAG 3 cut(s) 526, 697, 828
BspDI ATCGAT 2 cut(s) 134, 172
BspEI TCCGGA 1 cut(s) 753
BspFNI CGCG 1 cut(s) 909
BspLI GGNNCC 1 cut(s) 519
BspPI GGATC 4 cut(s) 512, 525, 665, 866
BsrDI GCAATG 1 cut(s) 820
BsrI ACTGG 1 cut(s) 609
BssECI CCNNGG 1 cut(s) 654
BssHII GCGCGC 1 cut(s) 907
BssMI GATC 6 cut(s) 135, 173, 517, 645, 670, 871
BssNI GRCGYC 2 cut(s) 417, 600
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 304, 352
Bst4CI ACNGT 3 cut(s) 111, 287, 856
Bst6I CTCTTC 5 cut(s) 413, 440, 479, 932, 951
BstACI GRCGYC 2 cut(s) 417, 600
BstC8I GCNNGC 2 cut(s) 265, 909
BstDEI CTNAG 3 cut(s) 513, 705, 836
BstFNI CGCG 1 cut(s) 909
BstH2I RGCGCY 2 cut(s) 270, 705
BstHHI GCGC 4 cut(s) 269, 704, 909, 911
BstKTI GATC 6 cut(s) 138, 176, 520, 648, 673, 874
BstMAI GTCTC 4 cut(s) 293, 472, 530, 966
BstMBI GATC 6 cut(s) 135, 173, 517, 645, 670, 871
BstMWI GCNNNNNNNGC 2 cut(s) 260, 917
BstNI CCWGG 2 cut(s) 304, 352
BstSCI CCNGG 2 cut(s) 302, 350
BstUI CGCG 1 cut(s) 909
BstV2I GAAGAC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 2 cut(s) 134, 172
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 1 cut(s) 968
BsuTUI ATCGAT 2 cut(s) 134, 172
BtgZI GCGATG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 265, 909
CfoI GCGC 4 cut(s) 269, 704, 909, 911
Cfr13I GGNCC 4 cut(s) 4, 111, 354, 840
ClaI ATCGAT 2 cut(s) 134, 172
CseI GACGC 2 cut(s) 319, 406
Csp6I GTAC 2 cut(s) 107, 280
CviAII CATG 1 cut(s) 271
CviQI GTAC 2 cut(s) 107, 280
DdeI CTNAG 3 cut(s) 513, 705, 836
DpnI GATC 6 cut(s) 137, 175, 519, 647, 672, 873
DpnII GATC 6 cut(s) 135, 173, 517, 645, 670, 871
EaeI YGGCCR 1 cut(s) 966
Eam1104I CTCTTC 5 cut(s) 413, 440, 479, 932, 951
EarI CTCTTC 5 cut(s) 413, 440, 479, 932, 951
EciI GGCGGA 5 cut(s) 269, 302, 392, 493, 588
Ecl136II GAGCTC 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 327, 431
Eco47I GGWCC 4 cut(s) 4, 111, 354, 840
Eco53kI GAGCTC 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 302, 350
EcoT38I GRGCYC 2 cut(s) 327, 431
Esp3I CGTCTC 2 cut(s) 293, 472
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 131, 167, 169, 210, 272
FaqI GGGAC 1 cut(s) 469
FatI CATG 1 cut(s) 270
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 3 cut(s) 336, 571, 666
FriOI GRGCYC 2 cut(s) 327, 431
Fsp4HI GCNGC 3 cut(s) 336, 571, 666
GlaI GCGC 4 cut(s) 268, 703, 908, 910
GluI GCNGC 3 cut(s) 336, 571, 666
GsuI CTGGAG 1 cut(s) 592
HaeII RGCGCY 2 cut(s) 270, 705
HaeIII GGCC 1 cut(s) 968
HapII CCGG 8 cut(s) 414, 591, 699, 754, 791, 826, 843, 860
HgaI GACGC 2 cut(s) 319, 406
HhaI GCGC 4 cut(s) 269, 704, 909, 911
Hin1I GRCGYC 2 cut(s) 417, 600
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 4 cut(s) 267, 702, 907, 909
HinP1I GCGC 4 cut(s) 267, 702, 907, 909
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 8 cut(s) 87, 227, 538, 707, 713, 719, 725, 959
HpaII CCGG 8 cut(s) 414, 591, 699, 754, 791, 826, 843, 860
HphI GGTGA 5 cut(s) 41, 487, 550, 605, 670
Hpy166II GTNNAC 3 cut(s) 206, 558, 661
Hpy188I TCNGA 8 cut(s) 522, 655, 712, 718, 724, 744, 769, 811
Hpy188III TCNNGA 6 cut(s) 515, 635, 754, 778, 875, 953
Hpy8I GTNNAC 3 cut(s) 206, 558, 661
Hpy99I CGWCG 4 cut(s) 335, 422, 533, 602
HpyAV CCTTC 5 cut(s) 56, 171, 367, 382, 517
HpyCH4III ACNGT 3 cut(s) 111, 287, 856
HpyCH4IV ACGT 4 cut(s) 246, 492, 531, 600
HpyCH4V TGCA 2 cut(s) 234, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 917
HpyF3I CTNAG 3 cut(s) 513, 705, 836
HpySE526I ACGT 4 cut(s) 246, 492, 531, 600
Hsp92I GRCGYC 2 cut(s) 417, 600
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 4 cut(s) 267, 702, 907, 909
Kpn2I TCCGGA 1 cut(s) 753
Kzo9I GATC 6 cut(s) 135, 173, 517, 645, 670, 871
LmnI GCTCC 1 cut(s) 817
LweI GCATC 1 cut(s) 393
MaeII ACGT 4 cut(s) 246, 492, 531, 600
MaeIII GTNAC 2 cut(s) 493, 593
MalI GATC 6 cut(s) 137, 175, 519, 647, 672, 873
MboI GATC 6 cut(s) 135, 173, 517, 645, 670, 871
MboII GAAGA 9 cut(s) 130, 168, 400, 427, 433, 466, 875, 949, 968
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 2 cut(s) 327, 431
MlsI TGGCCA 1 cut(s) 968
MluNI TGGCCA 1 cut(s) 968
MlyI GAGTC 7 cut(s) 81, 221, 532, 707, 713, 716, 968
MmeI TCCRAC 2 cut(s) 747, 789
Mox20I TGGCCA 1 cut(s) 968
MroI TCCGGA 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 968
MseI TTAA 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 968
MspI CCGG 8 cut(s) 414, 591, 699, 754, 791, 826, 843, 860
MspR9I CCNGG 2 cut(s) 304, 352
MvaI CCWGG 2 cut(s) 304, 352
MvnI CGCG 1 cut(s) 909
MwoI GCNNNNNNNGC 2 cut(s) 260, 917
NdeII GATC 6 cut(s) 135, 173, 517, 645, 670, 871
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 519
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 493, 593
PauI GCGCGC 1 cut(s) 907
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 462
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 725
PflFI GACNNNGTC 3 cut(s) 245, 599, 763
PfoI TCCNGGA 1 cut(s) 350
PkrI GCNGC 3 cut(s) 337, 572, 667
PleI GAGTC 7 cut(s) 81, 221, 532, 707, 713, 715, 967
PpsI GAGTC 7 cut(s) 81, 221, 532, 707, 713, 715, 967
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 302, 350
PspGI CCWGG 2 cut(s) 302, 350
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 4 cut(s) 4, 111, 354, 840
PsuI RGATCY 1 cut(s) 517
PsyI GACNNNGTC 3 cut(s) 245, 599, 763
PteI GCGCGC 1 cut(s) 907
RsaI GTAC 2 cut(s) 108, 281
RsaNI GTAC 2 cut(s) 107, 280
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 3 cut(s) 336, 571, 666
Sau3AI GATC 6 cut(s) 135, 173, 517, 645, 670, 871
Sau96I GGNCC 4 cut(s) 4, 111, 354, 840
SchI GAGTC 7 cut(s) 81, 221, 532, 707, 713, 716, 968
ScrFI CCNGG 2 cut(s) 304, 352
SduI GDGCHC 2 cut(s) 327, 431
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 4 cut(s) 4, 111, 354, 840
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 302, 350
TaaI ACNGT 3 cut(s) 111, 287, 856
TaiI ACGT 4 cut(s) 249, 495, 534, 603
TaqI TCGA 8 cut(s) 134, 172, 240, 393, 425, 584, 777, 870
TauI GCSGC 3 cut(s) 338, 573, 668
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 2 cut(s) 493, 593
Tsp45I GTSAC 2 cut(s) 493, 593
TspDTI ATGAA 2 cut(s) 177, 913
TspGWI ACGGA 1 cut(s) 830
TspRI CASTG 1 cut(s) 616
Tth111I GACNNNGTC 3 cut(s) 245, 599, 763
VpaK11BI GGWCC 4 cut(s) 4, 111, 354, 840
XmnI GAANNNNTTC 1 cut(s) 21
ZraI GACGTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.