Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005742.1

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Reverse (-)

72232 .. 72993

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005742.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggacttgtgcagtttcgacaacgtcaaggaggagaaagccagcgctatgcggaggtacaaccgtctccacaccatcaccaggcttttccgcctcaccgagctctgcatcgcagccgtcttgctctcctggaccttcactcgcctccccttcgccctctgcatctccctcgactacctctgcctcttctccggcgtcgtttcaaggcctctcttcgtcttcctcgtttgcaaagccatcatcgtctctctcttcgccaagtcccgcaacgtcaccgcctccgcctcgcctcgggattcgaaggacgacgtggagactcagctttacgatgagttcaccaacaactgcggtggaatgatgtcgaactccggtaacgacgtcctctccactgtgaaagaggaggttgtgtatcaggacaagcagatcatctccgaggcgctcccccattcgtctgtgctcttcacgctatgcctcttccgcttctgtctctgcgcgtcaccatatgacgtaagccacgttcttcatcattccatgctggcagtcggccaagcctgggcaagaaaaatgtcatgggcttggaatttttcttgcctagggtcatcaaaagccaaaacatggctgaacattattaggctggtggagttgcaaaaacagtcttgcccggtcaccacatcaacattccatgcttttgcccagtcaaatacataccactggacttgctctaagaaggttgaaggtaaaattctgatgaaggtcggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

253

Amino Acids

28.58

Weight (kDa)

8.81

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB7I	CCANNNNNTGG	1 cut(s)	615
AccII	CGCG	1 cut(s)	494
AciI	CCGC	7 cut(s)	52, 91, 265, 276, 282, 348, 478
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	580, 741
AcyI	GRCGYC	2 cut(s)	195, 378
AfaI	GTAC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	46
AfiI	CCNNNNNNNGG	4 cut(s)	81, 291, 553, 615
AgsI	TTSAA	2 cut(s)	204, 734
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	3 cut(s)	80, 128, 551
AluBI	AGCT	2 cut(s)	103, 322
AluI	AGCT	2 cut(s)	103, 322
Alw21I	GWGCWC	2 cut(s)	105, 459
Alw26I	GTCTC	4 cut(s)	71, 250, 308, 491
Ama87I	CYCGRG	1 cut(s)	291
Aor51HI	AGCGCT	1 cut(s)	46
AoxI	GGCC	2 cut(s)	206, 544
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	2 cut(s)	580, 741
AspA2I	CCTAGG	1 cut(s)	592
AspLEI	GCGC	3 cut(s)	47, 439, 494
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	6 cut(s)	70, 88, 265, 328, 489, 658
AsuII	TTCGAA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	132
AvrII	CCTAGG	1 cut(s)	592
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	105, 459
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	83, 245
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	3 cut(s)	82, 130, 553
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	4 cut(s)	71, 250, 308, 491
BfaI	CTAG	1 cut(s)	593
BfoI	RGCGCY	2 cut(s)	48, 440
BisI	GCNGC	1 cut(s)	114
BlnI	CCTAGG	1 cut(s)	592
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	4 cut(s)	82, 130, 553, 662
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	132
BmrFI	CCNGG	4 cut(s)	82, 130, 553, 662
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	2 cut(s)	117, 171
BmuI	ACTGGG	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	211
Bpu14I	TTCGAA	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	662
BsaHI	GRCGYC	2 cut(s)	195, 378
BsaJI	CCNNGG	4 cut(s)	290, 432, 552, 592
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 392, 398, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 291, 553, 615
Bse1I	ACTGG	2 cut(s)	694, 716
BseBI	CCWGG	3 cut(s)	82, 130, 553
BseDI	CCNNGG	4 cut(s)	290, 432, 552, 592
BseLI	CCNNNNNNNGG	4 cut(s)	81, 291, 553, 615
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	694, 716
BseRI	GAGGAG	2 cut(s)	47, 413
BseXI	GCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	208, 546
BsiHKAI	GWGCWC	2 cut(s)	105, 459
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	192, 369, 662
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	4 cut(s)	81, 291, 553, 615
BsmAI	GTCTC	4 cut(s)	71, 250, 308, 491
BsmBI	CGTCTC	2 cut(s)	71, 250
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	208, 546
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	105, 459
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	7 cut(s)	52, 91, 265, 276, 282, 348, 478
BspANI	GGCC	2 cut(s)	208, 546
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	694, 716
BssECI	CCNNGG	4 cut(s)	290, 432, 552, 592
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	2 cut(s)	195, 378
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	3 cut(s)	82, 130, 553
Bst4CI	ACNGT	3 cut(s)	65, 391, 654
Bst6I	CTCTTC	5 cut(s)	191, 218, 257, 464, 479
BstACI	GRCGYC	2 cut(s)	195, 378
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	43, 537
BstDEI	CTNAG	2 cut(s)	318, 723
BstEII	GGTNACC	1 cut(s)	664
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	2 cut(s)	48, 440
BstHHI	GCGC	3 cut(s)	47, 439, 494
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	4 cut(s)	71, 250, 308, 491
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 477
BstNI	CCWGG	3 cut(s)	82, 130, 553
BstPI	GGTNACC	1 cut(s)	664
BstSCI	CCNGG	4 cut(s)	80, 128, 551, 660
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	208, 546
BtgZI	GCGATG	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	387, 709
Cac8I	GCNNGC	2 cut(s)	43, 537
CfoI	GCGC	3 cut(s)	47, 439, 494
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	2 cut(s)	184, 483
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	4 cut(s)	331, 366, 698, 733
CviAII	CATG	4 cut(s)	532, 570, 615, 683
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	318, 723
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	5 cut(s)	191, 218, 257, 464, 479
EarI	CTCTTC	5 cut(s)	191, 218, 257, 464, 479
EciI	GGCGGA	2 cut(s)	80, 271
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	132
Eco47III	AGCGCT	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	664
EcoRII	CCWGG	3 cut(s)	80, 128, 551
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	2 cut(s)	71, 250
FaeI	CATG	4 cut(s)	535, 573, 618, 686
FaiI	YATR	9 cut(s)	50, 469, 502, 504, 533, 571, 616, 684, 706
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	4 cut(s)	531, 569, 614, 682
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	3 cut(s)	46, 438, 493
GluI	GCNGC	1 cut(s)	114
HaeII	RGCGCY	2 cut(s)	48, 440
HaeIII	GGCC	2 cut(s)	208, 546
HapII	CCGG	3 cut(s)	192, 369, 662
HgaI	GACGC	2 cut(s)	184, 483
HhaI	GCGC	3 cut(s)	47, 439, 494
Hin1I	GRCGYC	2 cut(s)	195, 378
Hin1II	CATG	4 cut(s)	535, 573, 618, 686
Hin6I	GCGC	3 cut(s)	45, 437, 492
HinP1I	GCGC	3 cut(s)	45, 437, 492
HinfI	GANTC	2 cut(s)	296, 316
HpaII	CCGG	3 cut(s)	192, 369, 662
HphI	GGTGA	6 cut(s)	70, 88, 265, 328, 489, 658
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	3 cut(s)	433, 747, 758
Hpy188III	TCNNGA	2 cut(s)	293, 413
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	3 cut(s)	200, 311, 380
HpyAV	CCTTC	6 cut(s)	145, 160, 295, 721, 728, 745
HpyCH4III	ACNGT	3 cut(s)	65, 391, 654
HpyCH4IV	ACGT	6 cut(s)	24, 270, 309, 378, 507, 516
HpyCH4V	TGCA	5 cut(s)	12, 108, 162, 231, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 477
HpyF3I	CTNAG	2 cut(s)	318, 723
HpySE526I	ACGT	6 cut(s)	24, 270, 309, 378, 507, 516
Hsp92I	GRCGYC	2 cut(s)	195, 378
Hsp92II	CATG	4 cut(s)	535, 573, 618, 686
HspAI	GCGC	3 cut(s)	45, 437, 492
Kzo9I	GATC	1 cut(s)	423
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	444
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	2 cut(s)	117, 171
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	6 cut(s)	24, 270, 309, 378, 507, 516
MaeIII	GTNAC	4 cut(s)	271, 371, 495, 664
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	7 cut(s)	178, 205, 211, 244, 451, 466, 512
MhlI	GDGCHC	2 cut(s)	105, 459
MluCI	AATT	2 cut(s)	580, 741
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	736
MspI	CCGG	3 cut(s)	192, 369, 662
MspR9I	CCNGG	4 cut(s)	82, 130, 553, 662
MvaI	CCWGG	3 cut(s)	82, 130, 553
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	463, 477
NciI	CCSGG	1 cut(s)	662
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	4 cut(s)	535, 573, 618, 686
NmuCI	GTSAC	3 cut(s)	271, 495, 664
NspV	TTCGAA	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 513
PfeI	GAWTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	615
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	80, 128, 551
PspEI	GGTNACC	1 cut(s)	664
PspGI	CCWGG	3 cut(s)	80, 128, 551
PspPI	GGNCC	1 cut(s)	132
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	464
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	4 cut(s)	82, 130, 553, 662
SduI	GDGCHC	2 cut(s)	105, 459
SfaNI	GCATC	2 cut(s)	117, 171
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	2 cut(s)	580, 741
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	7 cut(s)	52, 91, 265, 276, 282, 348, 478
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	4 cut(s)	80, 128, 551, 660
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	3 cut(s)	65, 391, 654
TaiI	ACGT	6 cut(s)	27, 273, 312, 381, 510, 519
TaqI	TCGA	4 cut(s)	18, 171, 299, 362
TasI	AATT	2 cut(s)	580, 741
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	2 cut(s)	394, 716
TseFI	GTSAC	3 cut(s)	271, 495, 664
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	3 cut(s)	271, 495, 664
TspDTI	ATGAA	1 cut(s)	512
TspRI	CASTG	2 cut(s)	394, 716
Tth111I	GACNNNGTC	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	580, 741
XmaJI	CCTAGG	1 cut(s)	592
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.