Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002601.1

Orthogroup ID

OG0009081

Physical Location & Seq

Genomic Coordinates Reverse (-)

19431 .. 23570

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002601.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgttaccctatcgggtacgagaggcatcaagtcctcatgctaccctatcgggtactagaggtatcaagccctcaatctacccttccgggtatcagaggctcaagccctcatgctaccctatcgggtacgagaggcatcaagccctcatgccaccccatcgggtgcgagaggcatcaagccctcatgctaccccatcgggtgcgagaggcatcaagccctcatgctacccatcgggtacgagaggcatcaagccctcatgttaccccatcggaggctcaagccctcatgctaccccatcgggtgcgagaggcatcaagccctcatgctacccccatcgggtacgagaggcattaaaccctcatgctaccccatcgggtacgagaggcatcaagccctcatgctaccccatcgggtacgagaggcatcaagtcctcatgctaccctatcgggtactagaggcatcaagccctcaatctacccttccgggtatcagaggctcaagtcctcattctaccccatcaggtacgataggctcaagctctaagaaaaccccacttggtagcggaggcggggtactagcttcattagggccccggggcaccaacatacccgtagagtcccttcttacttgcggagttgggggactagtactatggccccgcctatggcatgcatccgatataccgacacacgagctacgttgccatggtggaggtcggccgtttcgacaacgtcaaggcggagaaagccagcgccgccgtctccgcaccatcgccaggcttttccgcctcaccgagctctgcatcgccaccgtcttgctctcctggaccttcactcgcctcctcttcgcaatccgcatctccctcgactacctccgcctcttctccggcgtcgttttgagccccctcttcgtcttcctcgtctgcaacgccatcatcgtctctctctacgacaagtcaggcaacgtcaccgcctccgcctcgcctcgggatccgaaggacgacgtggagactcaactttacgatgagttcaccaacaactgctgtggaaagatgtcgaactccggtaacgacgtcctctccactgtgaaagaggaggttgtgtatcaggacaagcagatcatctccgaggcgctcccccattcttccgtgctcttcacgctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408

Protein Analysis

388

Amino Acids

42.12

Weight (kDa)

9.77

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66440
fragaria_vesca	FvH4_1g12780 FvH4_7g02350
malus_domestica	MD02G1143400.v1.1
prunus_persica	Prupe.7G158300_v2.0.a1
pyrus_communis	pycom15g22450
rosa_chinensis	RchiOBHm_Chr2g0100901
rosa_laevigata	RLG00000017022
rosa_multiflora	Rmu_sc0000924.1_g000055 Rmu_sc0001659.1_g000047 Rmu_sc0002601.1_g000002 Rmu_sc0005742.1_g000014 Rmu_sc0008053.1_g000019
rosa_roxburghii	Rroxscaffold_2G00141750 Rroxscaffold_3G00251430
rosa_rugosa	Rorug02G0093600
rosa_samantha	Rh2AG141100 Rh2BG146300 Rh2CG147600 Rh2DG146800 Rh7CG310400
rosa_wichuraiana	Rw2G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1077
AccB1I	GGYRCC	1 cut(s)	599
AclWI	GGATC	2 cut(s)	986, 999
AcoI	YGGCCR	1 cut(s)	719
AcyI	GRCGYC	2 cut(s)	891, 1074
AfiI	CCNNNNNNNGG	5 cut(s)	272, 337, 666, 777, 987
AhlI	ACTAGT	1 cut(s)	646
AjiI	CACGTC	1 cut(s)	1006
AjnI	CCWGG	2 cut(s)	776, 824
AluBI	AGCT	4 cut(s)	540, 581, 697, 799
AluI	AGCT	4 cut(s)	540, 581, 697, 799
Alw21I	GWGCWC	2 cut(s)	801, 1155
Alw26I	GTCTC	3 cut(s)	767, 946, 1004
AlwI	GGATC	2 cut(s)	986, 999
Ama87I	CYCGRG	2 cut(s)	594, 987
AoxI	GGCC	3 cut(s)	590, 656, 719
ApaI	GGGCCC	1 cut(s)	594
AspLEI	GCGC	2 cut(s)	756, 1135
AspS9I	GGNCC	4 cut(s)	590, 591, 657, 828
AsuC2I	CCSGG	4 cut(s)	88, 486, 595, 596
AsuHPI	GGTGA	3 cut(s)	784, 961, 1024
AvaI	CYCGRG	2 cut(s)	594, 987
AvaII	GGWCC	1 cut(s)	828
BaeGI	GKGCMC	2 cut(s)	594, 602
BamHI	GGATCC	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	3 cut(s)	594, 801, 905
BarI	GAAGNNNNNNTAC	2 cut(s)	606, 638
BauI	CACGAG	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	2 cut(s)	801, 1155
BceAI	ACGGC	2 cut(s)	706, 744
BcgI	CGANNNNNNTGC	2 cut(s)	847, 881
BciT130I	CCWGG	2 cut(s)	778, 826
BcnI	CCSGG	4 cut(s)	88, 486, 595, 596
BcoDI	GTCTC	3 cut(s)	767, 946, 1004
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	4 cut(s)	57, 455, 578, 647
BfoI	RGCGCY	2 cut(s)	757, 1136
BisI	GCNGC	1 cut(s)	757
BlsI	GCNGC	1 cut(s)	758
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	6 cut(s)	88, 486, 595, 596, 778, 826
Bme18I	GGWCC	1 cut(s)	828
BmeT110I	CYCGRG	2 cut(s)	594, 987
BmgBI	CACGTC	1 cut(s)	1006
BmgT120I	GGNCC	4 cut(s)	590, 591, 657, 828
BmiI	GGNNCC	5 cut(s)	592, 593, 601, 659, 993
BmrFI	CCNGG	6 cut(s)	88, 486, 595, 596, 778, 826
BpiI	GAAGAC	1 cut(s)	907
BpuEI	CTTGAG	4 cut(s)	86, 262, 484, 520
BpuMI	CCSGG	4 cut(s)	88, 486, 595, 596
BsaHI	GRCGYC	2 cut(s)	891, 1074
BsaJI	CCNNGG	6 cut(s)	593, 594, 595, 706, 986, 1128
BsaWI	WCCGGW	1 cut(s)	1064
BsaXI	ACNNNNNCTCC	6 cut(s)	558, 588, 1064, 1088, 1094, 1118
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 337, 666, 777, 987
BseBI	CCWGG	2 cut(s)	778, 826
BseDI	CCNNGG	6 cut(s)	593, 594, 595, 706, 986, 1128
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	5 cut(s)	272, 337, 666, 777, 987
BseRI	GAGGAG	2 cut(s)	833, 1109
BseSI	GKGCMC	2 cut(s)	594, 602
BseX3I	CGGCCG	1 cut(s)	719
Bsh1285I	CGRYCG	1 cut(s)	722
BshFI	GGCC	3 cut(s)	592, 658, 721
BshNI	GGYRCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	722
BsiHKAI	GWGCWC	2 cut(s)	801, 1155
BsiHKCI	CYCGRG	2 cut(s)	594, 987
BsiSI	CCGG	5 cut(s)	87, 485, 595, 888, 1065
BslFI	GGGAC	2 cut(s)	604, 657
BslI	CCNNNNNNNGG	5 cut(s)	272, 337, 666, 777, 987
BsmAI	GTCTC	3 cut(s)	767, 946, 1004
BsmBI	CGTCTC	2 cut(s)	767, 946
BsmFI	GGGAC	2 cut(s)	604, 657
BsnI	GGCC	3 cut(s)	592, 658, 721
BsoBI	CYCGRG	2 cut(s)	594, 987
Bsp120I	GGGCCC	1 cut(s)	590
Bsp1286I	GDGCHC	5 cut(s)	594, 602, 801, 905, 1155
Bsp143I	GATC	2 cut(s)	991, 1119
Bsp19I	CCATGG	1 cut(s)	706
BspANI	GGCC	3 cut(s)	592, 658, 721
BspLI	GGNNCC	5 cut(s)	592, 593, 601, 659, 993
BspPI	GGATC	2 cut(s)	986, 999
BspQI	GCTCTTC	1 cut(s)	1160
BspT107I	GGYRCC	1 cut(s)	599
BssECI	CCNNGG	6 cut(s)	593, 594, 595, 706, 986, 1128
BssMI	GATC	2 cut(s)	991, 1119
BssNI	GRCGYC	2 cut(s)	891, 1074
BssSI	CACGAG	1 cut(s)	692
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	778, 826
Bst4CI	ACNGT	2 cut(s)	814, 1087
Bst6I	CTCTTC	4 cut(s)	851, 887, 914, 1160
BstACI	GRCGYC	2 cut(s)	891, 1074
BstC8I	GCNNGC	2 cut(s)	672, 752
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	1 cut(s)	674
BstH2I	RGCGCY	2 cut(s)	757, 1136
BstHHI	GCGC	2 cut(s)	756, 1135
BstKTI	GATC	2 cut(s)	994, 1122
BstMAI	GTCTC	3 cut(s)	767, 946, 1004
BstMBI	GATC	2 cut(s)	991, 1119
BstMCI	CGRYCG	1 cut(s)	722
BstMWI	GCNNNNNNNGC	4 cut(s)	747, 756, 765, 1159
BstNI	CCWGG	2 cut(s)	778, 826
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	6 cut(s)	86, 484, 593, 594, 776, 824
BstSLI	GKGCMC	2 cut(s)	594, 602
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	1 cut(s)	991
BstYI	RGATCY	1 cut(s)	991
BstZI	CGGCCG	1 cut(s)	719
BsuRI	GGCC	3 cut(s)	592, 658, 721
BtgI	CCRYGG	1 cut(s)	706
BtgZI	GCGATG	2 cut(s)	757, 790
BtrI	CACGTC	1 cut(s)	1006
BtsCI	GGATG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	1083
Cac8I	GCNNGC	2 cut(s)	672, 752
CfoI	GCGC	2 cut(s)	756, 1135
Cfr13I	GGNCC	4 cut(s)	590, 591, 657, 828
Cfr9I	CCCGGG	1 cut(s)	594
CseI	GACGC	1 cut(s)	880
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	2 cut(s)	993, 1121
DpnII	GATC	2 cut(s)	991, 1119
EaeI	YGGCCR	1 cut(s)	719
EagI	CGGCCG	1 cut(s)	719
Eam1104I	CTCTTC	4 cut(s)	851, 887, 914, 1160
EarI	CTCTTC	4 cut(s)	851, 887, 914, 1160
EciI	GGCGGA	4 cut(s)	756, 776, 866, 967
Ecl136II	GAGCTC	1 cut(s)	799
EclXI	CGGCCG	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	706
Eco24I	GRGCYC	3 cut(s)	594, 801, 905
Eco47I	GGWCC	1 cut(s)	828
Eco52I	CGGCCG	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	799
Eco88I	CYCGRG	2 cut(s)	594, 987
EcoICRI	GAGCTC	1 cut(s)	799
EcoO109I	RGGNCCY	2 cut(s)	590, 591
EcoRII	CCWGG	2 cut(s)	776, 824
EcoT14I	CCWWGG	1 cut(s)	706
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	3 cut(s)	594, 801, 905
ErhI	CCWWGG	1 cut(s)	706
Esp3I	CGTCTC	2 cut(s)	767, 946
FaqI	GGGAC	2 cut(s)	604, 657
FauI	CCCGC	2 cut(s)	563, 668
Fnu4HI	GCNGC	1 cut(s)	757
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	3 cut(s)	594, 801, 905
Fsp4HI	GCNGC	1 cut(s)	757
FspBI	CTAG	4 cut(s)	57, 455, 578, 647
GlaI	GCGC	2 cut(s)	755, 1134
GluI	GCNGC	1 cut(s)	757
HaeII	RGCGCY	2 cut(s)	757, 1136
HaeIII	GGCC	3 cut(s)	592, 658, 721
HapII	CCGG	5 cut(s)	87, 485, 595, 888, 1065
HgaI	GACGC	1 cut(s)	880
HhaI	GCGC	2 cut(s)	756, 1135
Hin1I	GRCGYC	2 cut(s)	891, 1074
Hin6I	GCGC	2 cut(s)	754, 1133
HinP1I	GCGC	2 cut(s)	754, 1133
HinfI	GANTC	2 cut(s)	617, 1012
HpaII	CCGG	5 cut(s)	87, 485, 595, 888, 1065
HphI	GGTGA	3 cut(s)	784, 961, 1024
Hpy166II	GTNNAC	1 cut(s)	1032
Hpy188I	TCNGA	6 cut(s)	96, 272, 494, 679, 996, 1129
Hpy188III	TCNNGA	2 cut(s)	989, 1109
Hpy8I	GTNNAC	1 cut(s)	1032
Hpy99I	CGWCG	3 cut(s)	896, 1007, 1076
HpyAV	CCTTC	5 cut(s)	93, 491, 632, 841, 991
HpyCH4III	ACNGT	2 cut(s)	814, 1087
HpyCH4IV	ACGT	5 cut(s)	700, 733, 966, 1005, 1074
HpyCH4V	TGCA	3 cut(s)	674, 804, 927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	747, 756, 765, 1159
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	5 cut(s)	700, 733, 966, 1005, 1074
Hsp92I	GRCGYC	2 cut(s)	891, 1074
HspAI	GCGC	2 cut(s)	754, 1133
Kzo9I	GATC	2 cut(s)	991, 1119
LguI	GCTCTTC	1 cut(s)	1160
LmnI	GCTCC	1 cut(s)	1140
MaeI	CTAG	4 cut(s)	57, 455, 578, 647
MaeII	ACGT	5 cut(s)	700, 733, 966, 1005, 1074
MaeIII	GTNAC	4 cut(s)	3, 260, 967, 1067
MalI	GATC	2 cut(s)	993, 1121
MboI	GATC	2 cut(s)	991, 1119
MboII	GAAGA	6 cut(s)	838, 874, 901, 907, 1137, 1147
MflI	RGATCY	1 cut(s)	991
MhlI	GDGCHC	5 cut(s)	594, 602, 801, 905, 1155
MlyI	GAGTC	2 cut(s)	626, 1006
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	1 cut(s)	353
MspI	CCGG	5 cut(s)	87, 485, 595, 888, 1065
MspR9I	CCNGG	6 cut(s)	88, 486, 595, 596, 778, 826
MvaI	CCWGG	2 cut(s)	778, 826
MwoI	GCNNNNNNNGC	4 cut(s)	747, 756, 765, 1159
NciI	CCSGG	4 cut(s)	88, 486, 595, 596
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	2 cut(s)	991, 1119
NlaIV	GGNNCC	5 cut(s)	592, 593, 601, 659, 993
NmuCI	GTSAC	1 cut(s)	967
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	674
PaeI	GCATGC	1 cut(s)	674
PciSI	GCTCTTC	1 cut(s)	1160
PcsI	WCGNNNNNNNCGW	3 cut(s)	724, 918, 936
PflFI	GACNNNGTC	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	824
PkrI	GCNGC	1 cut(s)	758
PleI	GAGTC	2 cut(s)	625, 1006
PpsI	GAGTC	2 cut(s)	625, 1006
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	776, 824
PspGI	CCWGG	2 cut(s)	776, 824
PspN4I	GGNNCC	5 cut(s)	592, 593, 601, 659, 993
PspOMI	GGGCCC	1 cut(s)	590
PspPI	GGNCC	4 cut(s)	590, 591, 657, 828
PsuI	RGATCY	1 cut(s)	991
PsyI	GACNNNGTC	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	1160
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	757
Sau3AI	GATC	2 cut(s)	991, 1119
Sau96I	GGNCC	4 cut(s)	590, 591, 657, 828
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	2 cut(s)	626, 1006
ScrFI	CCNGG	6 cut(s)	88, 486, 595, 596, 778, 826
SduI	GDGCHC	5 cut(s)	594, 602, 801, 905, 1155
SinI	GGWCC	1 cut(s)	828
SmaI	CCCGGG	1 cut(s)	596
SmlI	CTYRAG	4 cut(s)	101, 277, 499, 535
SmoI	CTYRAG	4 cut(s)	101, 277, 499, 535
SpeI	ACTAGT	1 cut(s)	646
SphI	GCATGC	1 cut(s)	674
SspMI	CTAG	4 cut(s)	57, 455, 578, 647
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	6 cut(s)	86, 484, 593, 594, 776, 824
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	2 cut(s)	814, 1087
TaiI	ACGT	5 cut(s)	703, 736, 969, 1008, 1077
TaqI	TCGA	3 cut(s)	727, 867, 1058
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	759
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	1090
TseFI	GTSAC	1 cut(s)	967
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	1 cut(s)	573
TspGWI	ACGGA	1 cut(s)	1138
TspMI	CCCGGG	1 cut(s)	594
TspRI	CASTG	1 cut(s)	1090
Tth111I	GACNNNGTC	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	828
XceI	RCATGY	1 cut(s)	674
XmaI	CCCGGG	1 cut(s)	594
XspI	CTAG	4 cut(s)	57, 455, 578, 647
ZraI	GACGTC	1 cut(s)	1075
ZrmI	AGTACT	1 cut(s)	651
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.