Rh2DG146800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009081
Physical Location & Seq
Reverse (-)
12336961 .. 12338365
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG146800.1

Sequence Viewer

Length: 1005 bp
ATGGTCCAGCACAAAGAAAAACTTCACTTCTCTCCAAGTAATAGCCTTCACCACCAAACACACACTCCCCCAAAACTCTCTCCCAGACTCCCACGCACTCACTCTGTACGGTCCAATCCACACTATTCCATATCGATCTTCAATCCAAATCCCATCTCTCCTTCCATATATCTTCCTCCACTTCATTTCACTAGCTTCCTCTGTAAACATATTCTCTCTTTAATGGACTCGTGCGGTTTCGACAACGTCAAGGCGGAGAAAGCCAGCGCCATGCGGAGGTACAACCGTCTCCGCACCATCGCCAGGCTTTTCCGCCTCGCCGAGCTCTGCGTCGCAGCCGTCTTGCTCTCCTGGACCTTCACTCGCCTCCCCTTCGCCCTCCGCATCTCCCTCGACTACCTCCGCCTCTTCTCCGGCGTCGTTTCGAGCCCTCTCTTCGTCTTCCTCGTCTGCAACGCCATCATCGTCTCTCTCTTGGCCAAGTCCCGCAACGTCACCGCCTCCGCCTCCGCCTCCGCCTCGCCTCAGGATCCGAAGGACGACGTGGAGACTCAACTTTACGATGAGTTCACCAACAACTGCGGCGGAAAGATGTCGAACTCCGGTGACGACGTCCTCTCCAGTGTGAAAGAGGAGGTTGCGTATCAGGACAAGCAGATCATCTCCGAGGTGAACGCCGCCGATCCTAAACCTGAAACCGACCCGAACTCCGGCGCTGAGTCAGACTCGGACTCGGATTCGGGTTTGGAGTTTCCGAAAGCTATCCGGAGGACGAAGTCGGAGAAGTTCGAGAGAGTTGTTCCGGCGAAGCTAAAAAGGTCGGACACGGAGGATTGCCGGAAAATGCTGAGGTCCGGCGAGGAAACTGTGCCGGAAGATTTCGATCCAGAGGACGACTTGAGCAACGAGGAGTTTCAGCGCGCCATTGAAGCTTTCATTGAGAAGCAGAAGAGGTTTCGTCATCAGGAAGAGTCTCTGGCCATTGTGCTTCAAAACCAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408

Protein Analysis

334

Amino Acids

37.63

Weight (kDa)

6.38

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 615
AccII CGCG 1 cut(s) 921
AccIII TCCGGA 1 cut(s) 765
AclWI GGATC 4 cut(s) 524, 537, 677, 878
AcoI YGGCCR 2 cut(s) 477, 978
AcyI GRCGYC 2 cut(s) 417, 612
AfaI GTAC 2 cut(s) 108, 281
AfiI CCNNNNNNNGG 3 cut(s) 276, 303, 710
AgsI TTSAA 3 cut(s) 142, 929, 992
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 2 cut(s) 302, 350
AluBI AGCT 6 cut(s) 195, 325, 761, 811, 932, 1002
AluI AGCT 6 cut(s) 195, 325, 761, 811, 932, 1002
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 4 cut(s) 293, 472, 542, 978
AlwI GGATC 4 cut(s) 524, 537, 677, 878
Aor13HI TCCGGA 1 cut(s) 765
AoxI GGCC 2 cut(s) 477, 978
ApeKI GCWGC 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 4 cut(s) 269, 716, 921, 923
AspS9I GGNCC 4 cut(s) 4, 111, 354, 852
AsuHPI GGTGA 5 cut(s) 41, 487, 562, 617, 682
AvaII GGWCC 4 cut(s) 4, 111, 354, 852
AxyI CCTNAGG 1 cut(s) 525
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BalI TGGCCA 2 cut(s) 479, 980
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 2 cut(s) 327, 431
BauI CACGAG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 848
BbvI GCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 161, 305, 467
BceAI ACGGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 2 cut(s) 304, 352
BcoDI GTCTC 4 cut(s) 293, 472, 542, 978
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 2 cut(s) 270, 717
BisI GCNGC 3 cut(s) 336, 583, 678
BlsI GCNGC 3 cut(s) 337, 584, 679
Bme1390I CCNGG 2 cut(s) 304, 352
Bme18I GGWCC 4 cut(s) 4, 111, 354, 852
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 4 cut(s) 4, 111, 354, 852
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 2 cut(s) 304, 352
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 433
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpmI CTGGAG 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 919
Bsa29I ATCGAT 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 882
BsaHI GRCGYC 2 cut(s) 417, 612
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 2 cut(s) 602, 765
BsaXI ACNNNNNCTCC 8 cut(s) 49, 79, 602, 626, 632, 656, 692, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 303, 710
Bse1I ACTGG 1 cut(s) 621
Bse21I CCTNAGG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 882
BseAI TCCGGA 1 cut(s) 765
BseBI CCWGG 2 cut(s) 304, 352
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 666
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 3 cut(s) 276, 303, 710
BseMII CTCAG 3 cut(s) 539, 708, 839
BseNI ACTGG 1 cut(s) 621
BsePI GCGCGC 1 cut(s) 919
BseRI GAGGAG 2 cut(s) 647, 923
BseXI GCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 921
BshFI GGCC 2 cut(s) 479, 980
BshVI ATCGAT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 8 cut(s) 414, 603, 711, 766, 803, 838, 855, 872
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 276, 303, 710
BsmAI GTCTC 4 cut(s) 293, 472, 542, 978
BsmBI CGTCTC 2 cut(s) 293, 472
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 2 cut(s) 479, 980
Bsp1286I GDGCHC 2 cut(s) 327, 431
Bsp13I TCCGGA 1 cut(s) 765
Bsp143I GATC 5 cut(s) 135, 529, 657, 682, 883
BspANI GGCC 2 cut(s) 479, 980
BspCNI CTCAG 3 cut(s) 538, 709, 840
BspDI ATCGAT 1 cut(s) 134
BspEI TCCGGA 1 cut(s) 765
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 4 cut(s) 524, 537, 677, 878
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 1 cut(s) 666
BssHII GCGCGC 1 cut(s) 919
BssMI GATC 5 cut(s) 135, 529, 657, 682, 883
BssNI GRCGYC 2 cut(s) 417, 612
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 304, 352
Bst4CI ACNGT 3 cut(s) 111, 287, 868
Bst6I CTCTTC 4 cut(s) 413, 440, 944, 963
BstACI GRCGYC 2 cut(s) 417, 612
BstC8I GCNNGC 2 cut(s) 265, 921
BstDEI CTNAG 3 cut(s) 525, 717, 848
BstFNI CGCG 1 cut(s) 921
BstH2I RGCGCY 2 cut(s) 270, 717
BstHHI GCGC 4 cut(s) 269, 716, 921, 923
BstKTI GATC 5 cut(s) 138, 532, 660, 685, 886
BstMAI GTCTC 4 cut(s) 293, 472, 542, 978
BstMBI GATC 5 cut(s) 135, 529, 657, 682, 883
BstMWI GCNNNNNNNGC 2 cut(s) 260, 929
BstNI CCWGG 2 cut(s) 304, 352
BstSCI CCNGG 2 cut(s) 302, 350
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 525
BsuRI GGCC 2 cut(s) 479, 980
BsuTUI ATCGAT 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 265, 921
CfoI GCGC 4 cut(s) 269, 716, 921, 923
Cfr13I GGNCC 4 cut(s) 4, 111, 354, 852
ClaI ATCGAT 1 cut(s) 134
CseI GACGC 2 cut(s) 319, 406
Csp6I GTAC 2 cut(s) 107, 280
CviAII CATG 1 cut(s) 271
CviQI GTAC 2 cut(s) 107, 280
DdeI CTNAG 3 cut(s) 525, 717, 848
DpnI GATC 5 cut(s) 137, 531, 659, 684, 885
DpnII GATC 5 cut(s) 135, 529, 657, 682, 883
EaeI YGGCCR 2 cut(s) 477, 978
Eam1104I CTCTTC 4 cut(s) 413, 440, 944, 963
EarI CTCTTC 4 cut(s) 413, 440, 944, 963
EciI GGCGGA 7 cut(s) 269, 302, 392, 493, 499, 505, 600
Ecl136II GAGCTC 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 327, 431
Eco47I GGWCC 4 cut(s) 4, 111, 354, 852
Eco53kI GAGCTC 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 302, 350
EcoT38I GRGCYC 2 cut(s) 327, 431
Esp3I CGTCTC 2 cut(s) 293, 472
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 131, 167, 169, 210, 272
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 469
FatI CATG 1 cut(s) 270
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 3 cut(s) 336, 583, 678
FriOI GRGCYC 2 cut(s) 327, 431
Fsp4HI GCNGC 3 cut(s) 336, 583, 678
FspBI CTAG 1 cut(s) 192
GlaI GCGC 4 cut(s) 268, 715, 920, 922
GluI GCNGC 3 cut(s) 336, 583, 678
GsuI CTGGAG 1 cut(s) 604
HaeII RGCGCY 2 cut(s) 270, 717
HaeIII GGCC 2 cut(s) 479, 980
HapII CCGG 8 cut(s) 414, 603, 711, 766, 803, 838, 855, 872
HgaI GACGC 2 cut(s) 319, 406
HhaI GCGC 4 cut(s) 269, 716, 921, 923
Hin1I GRCGYC 2 cut(s) 417, 612
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 4 cut(s) 267, 714, 919, 921
HinP1I GCGC 4 cut(s) 267, 714, 919, 921
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 8 cut(s) 87, 227, 550, 719, 725, 731, 737, 971
HpaII CCGG 8 cut(s) 414, 603, 711, 766, 803, 838, 855, 872
HphI GGTGA 5 cut(s) 41, 487, 562, 617, 682
Hpy166II GTNNAC 3 cut(s) 206, 570, 673
Hpy188I TCNGA 8 cut(s) 534, 667, 724, 730, 736, 756, 781, 823
Hpy188III TCNNGA 6 cut(s) 527, 647, 766, 790, 887, 965
Hpy8I GTNNAC 3 cut(s) 206, 570, 673
Hpy99I CGWCG 4 cut(s) 335, 422, 545, 614
HpyAV CCTTC 5 cut(s) 56, 171, 367, 382, 529
HpyCH4III ACNGT 3 cut(s) 111, 287, 868
HpyCH4IV ACGT 4 cut(s) 246, 492, 543, 612
HpyCH4V TGCA 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 929
HpyF3I CTNAG 3 cut(s) 525, 717, 848
HpySE526I ACGT 4 cut(s) 246, 492, 543, 612
Hsp92I GRCGYC 2 cut(s) 417, 612
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 4 cut(s) 267, 714, 919, 921
Kpn2I TCCGGA 1 cut(s) 765
Kzo9I GATC 5 cut(s) 135, 529, 657, 682, 883
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 393
MaeI CTAG 1 cut(s) 192
MaeII ACGT 4 cut(s) 246, 492, 543, 612
MaeIII GTNAC 2 cut(s) 493, 605
MalI GATC 5 cut(s) 137, 531, 659, 684, 885
MboI GATC 5 cut(s) 135, 529, 657, 682, 883
MboII GAAGA 8 cut(s) 130, 164, 400, 427, 433, 887, 961, 980
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 327, 431
MlsI TGGCCA 2 cut(s) 479, 980
MluNI TGGCCA 2 cut(s) 479, 980
MlyI GAGTC 7 cut(s) 81, 221, 544, 719, 725, 728, 980
MmeI TCCRAC 2 cut(s) 759, 801
Mox20I TGGCCA 2 cut(s) 479, 980
MroI TCCGGA 1 cut(s) 765
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 2 cut(s) 479, 980
MseI TTAA 1 cut(s) 221
Msp20I TGGCCA 2 cut(s) 479, 980
MspI CCGG 8 cut(s) 414, 603, 711, 766, 803, 838, 855, 872
MspR9I CCNGG 2 cut(s) 304, 352
MvaI CCWGG 2 cut(s) 304, 352
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 2 cut(s) 260, 929
NdeII GATC 5 cut(s) 135, 529, 657, 682, 883
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 531
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 493, 605
PauI GCGCGC 1 cut(s) 919
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 462
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 737
PflFI GACNNNGTC 3 cut(s) 245, 611, 775
PfoI TCCNGGA 1 cut(s) 350
PkrI GCNGC 3 cut(s) 337, 584, 679
PleI GAGTC 7 cut(s) 81, 221, 544, 719, 725, 727, 979
PpsI GAGTC 7 cut(s) 81, 221, 544, 719, 725, 727, 979
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 302, 350
PspGI CCWGG 2 cut(s) 302, 350
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 4 cut(s) 4, 111, 354, 852
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 3 cut(s) 245, 611, 775
PteI GCGCGC 1 cut(s) 919
RsaI GTAC 2 cut(s) 108, 281
RsaNI GTAC 2 cut(s) 107, 280
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 3 cut(s) 336, 583, 678
Sau3AI GATC 5 cut(s) 135, 529, 657, 682, 883
Sau96I GGNCC 4 cut(s) 4, 111, 354, 852
SchI GAGTC 7 cut(s) 81, 221, 544, 719, 725, 728, 980
ScrFI CCNGG 2 cut(s) 304, 352
SduI GDGCHC 2 cut(s) 327, 431
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 4 cut(s) 4, 111, 354, 852
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 302, 350
TaaI ACNGT 3 cut(s) 111, 287, 868
TaiI ACGT 4 cut(s) 249, 495, 546, 615
TaqI TCGA 7 cut(s) 134, 240, 393, 425, 596, 789, 882
TauI GCSGC 2 cut(s) 585, 680
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 2 cut(s) 493, 605
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 493, 605
TspDTI ATGAA 2 cut(s) 173, 925
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 1 cut(s) 628
Tth111I GACNNNGTC 3 cut(s) 245, 611, 775
VpaK11BI GGWCC 4 cut(s) 4, 111, 354, 852
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 192
ZraI GACGTC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.