FvH4_1g15910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006528
Physical Location & Seq
Reverse (-)
9048783 .. 9050014
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15910.t1

Sequence Viewer

Length: 543 bp
ATGGCCTGTTTACACACAATGTATAACTCAGAGCACAAGGGTCAGTACTGCAATGGTGGTAGTGGTGGTGCTCCAATGAGCCCTAGGATTTCTTTCTCTAATGACTTTGCTGATGCCCAACATGTGATCAAGCATGAGAGGAGCTCAAGGGAGGCACCAGCGTCTTCTGATTTTGAGTTCTCAGTGACCAACTACTCCATGATGAGTGCTGATGAGCTTTTCTCTAAGGGGAGGTTGCTGCCTTACAAGGGCAGCAACAAGAGCCAGATGCAGAGGGGTACTACCACTCTTAGAGATGAGCTTCTTGTGGAGGATCGGGAGGACGACGTGTCATCTCATAGGCCGCCCAAGGGGTCGTCCACGAGGTGGAAGGGGCTTCTGGGCCGGAAGAGGACTGCCCACATTGGGTCCAAGAAAGCAGAGAAAGCTAGTGAAGGGTCTTCTAAGGAAGAAAGAAGGTCTGGTCTTGTGCATGAGAGTTCTTCACAGGAGGTGTTGAATGAAGGAGGGTCAAGTTGGAGAGGGTTTGAGATTGGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.87

Weight (kDa)

8.54

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 366
AciI CCGC 1 cut(s) 344
AclWI GGATC 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 366
AfaI GTAC 2 cut(s) 47, 280
AfiI CCNNNNNNNGG 4 cut(s) 248, 350, 366, 405
AflIII ACRYGT 2 cut(s) 121, 327
AgsI TTSAA 1 cut(s) 499
AhdI GACNNNNNGTC 1 cut(s) 328
AjiI CACGTC 1 cut(s) 328
AluBI AGCT 4 cut(s) 144, 217, 301, 428
AluI AGCT 4 cut(s) 144, 217, 301, 428
Alw21I GWGCWC 3 cut(s) 36, 73, 146
AlwI GGATC 1 cut(s) 321
AoxI GGCC 3 cut(s) 3, 341, 382
ApeKI GCWGC 2 cut(s) 238, 252
AspA2I CCTAGG 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 382, 408
AvaII GGWCC 1 cut(s) 408
AvrII CCTAGG 1 cut(s) 83
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 2 cut(s) 83, 146
BauI CACGAG 1 cut(s) 361
BbsI GAAGAC 2 cut(s) 156, 432
Bbv12I GWGCWC 3 cut(s) 36, 73, 146
BbvI GCAGC 2 cut(s) 225, 264
BclI TGATCA 1 cut(s) 126
BfaI CTAG 2 cut(s) 84, 429
BisI GCNGC 3 cut(s) 239, 253, 344
BlnI CCTAGG 1 cut(s) 83
BlsI GCNGC 3 cut(s) 240, 254, 345
BmcAI AGTACT 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 328
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 382, 408
BmiI GGNNCC 2 cut(s) 156, 409
BmsI GCATC 2 cut(s) 103, 258
BpiI GAAGAC 2 cut(s) 156, 432
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 206, 238
BpuEI CTTGAG 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 83, 348
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 350, 366, 405
Bse3DI GCAATG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 83, 348
BseLI CCNNNNNNNGG 4 cut(s) 248, 350, 366, 405
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 42, 195
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 225, 264
BshFI GGCC 3 cut(s) 5, 343, 384
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 3 cut(s) 36, 73, 146
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 4 cut(s) 248, 350, 366, 405
BsnI GGCC 3 cut(s) 5, 343, 384
Bsp1286I GDGCHC 4 cut(s) 36, 73, 83, 146
Bsp143I GATC 2 cut(s) 126, 313
BspACI CCGC 1 cut(s) 344
BspANI GGCC 3 cut(s) 5, 343, 384
BspCNI CTCAG 2 cut(s) 41, 194
BspLI GGNNCC 2 cut(s) 156, 409
BspPI GGATC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 83, 348
BssMI GATC 2 cut(s) 126, 313
BssSI CACGAG 1 cut(s) 361
BssT1I CCWWGG 2 cut(s) 83, 348
Bst2BI CACGAG 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 383
BstDEI CTNAG 5 cut(s) 28, 181, 225, 290, 444
BstKTI GATC 2 cut(s) 129, 316
BstMBI GATC 2 cut(s) 126, 313
BstMWI GCNNNNNNNGC 2 cut(s) 261, 425
BstNSI RCATGY 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 225, 264
BstV2I GAAGAC 2 cut(s) 156, 432
BsuRI GGCC 3 cut(s) 5, 343, 384
BtrI CACGTC 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 382, 408
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 46, 279
CviAII CATG 4 cut(s) 122, 134, 199, 473
CviQI GTAC 2 cut(s) 46, 279
DdeI CTNAG 5 cut(s) 28, 181, 225, 290, 444
DpnI GATC 2 cut(s) 128, 315
DpnII GATC 2 cut(s) 126, 313
DraIII CACNNNGTG 1 cut(s) 366
DriI GACNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 383
Eam1105I GACNNNNNGTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 83, 348
Eco24I GRGCYC 2 cut(s) 83, 146
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 83, 348
EcoT38I GRGCYC 2 cut(s) 83, 146
ErhI CCWWGG 2 cut(s) 83, 348
FaeI CATG 4 cut(s) 125, 137, 202, 476
FaiI YATR 7 cut(s) 24, 123, 135, 200, 339, 474, 541
FatI CATG 4 cut(s) 121, 133, 198, 472
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 239, 253, 344
FriOI GRGCYC 2 cut(s) 83, 146
Fsp4HI GCNGC 3 cut(s) 239, 253, 344
FspBI CTAG 2 cut(s) 84, 429
GluI GCNGC 3 cut(s) 239, 253, 344
HaeIII GGCC 3 cut(s) 5, 343, 384
HapII CCGG 1 cut(s) 385
HgaI GACGC 1 cut(s) 150
Hin1II CATG 4 cut(s) 125, 137, 202, 476
HpaII CCGG 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 11, 360
Hpy188I TCNGA 2 cut(s) 31, 169
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 11, 360
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 4 cut(s) 364, 428, 450, 497
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 51, 271, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 425
HpyF3I CTNAG 5 cut(s) 28, 181, 225, 290, 444
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 4 cut(s) 125, 137, 202, 476
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 313
LmnI GCTCC 2 cut(s) 76, 141
LpnPI CCDG 7 cut(s) 19, 171, 278, 365, 398, 447, 473
Lsp1109I GCAGC 2 cut(s) 225, 264
LweI GCATC 2 cut(s) 103, 258
MaeI CTAG 2 cut(s) 84, 429
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 128, 315
MboI GATC 2 cut(s) 126, 313
MboII GAAGA 5 cut(s) 156, 400, 432, 461, 474
MhlI GDGCHC 4 cut(s) 36, 73, 83, 146
MmeI TCCRAC 1 cut(s) 497
MspI CCGG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 261, 425
NdeII GATC 2 cut(s) 126, 313
NlaIII CATG 4 cut(s) 125, 137, 202, 476
NlaIV GGNNCC 2 cut(s) 156, 409
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 125
PciI ACATGT 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 3 cut(s) 240, 254, 345
PscI ACATGT 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 156, 409
PspPI GGNCC 2 cut(s) 382, 408
RsaI GTAC 2 cut(s) 47, 280
RsaNI GTAC 2 cut(s) 46, 279
SacI GAGCTC 1 cut(s) 146
SatI GCNGC 3 cut(s) 239, 253, 344
Sau3AI GATC 2 cut(s) 126, 313
Sau96I GGNCC 2 cut(s) 382, 408
ScaI AGTACT 1 cut(s) 47
SduI GDGCHC 4 cut(s) 36, 73, 83, 146
SetI ASST 9 cut(s) 146, 219, 236, 303, 330, 368, 430, 461, 495
SfaNI GCATC 2 cut(s) 103, 258
SinI GGWCC 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 84, 429
SstI GAGCTC 1 cut(s) 146
StyI CCWWGG 2 cut(s) 83, 348
TaiI ACGT 1 cut(s) 330
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 346
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 238, 252
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 516
TspRI CASTG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 408
XceI RCATGY 1 cut(s) 125
XmaJI CCTAGG 1 cut(s) 83
XspI CTAG 2 cut(s) 84, 429
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.